Remove silly tex/ directory.
authorW. Trevor King <wking@drexel.edu>
Sat, 14 May 2011 18:44:44 +0000 (14:44 -0400)
committerW. Trevor King <wking@drexel.edu>
Sat, 14 May 2011 18:44:44 +0000 (14:44 -0400)
360 files changed:
SConstruct [moved from tex/SConstruct with 100% similarity]
site_cons/__init__.py [moved from tex/site_cons/__init__.py with 100% similarity]
site_cons/site_init.py [moved from tex/site_cons/site_init.py with 100% similarity]
site_cons/site_tools/__init__.py [moved from tex/site_cons/site_tools/__init__.py with 100% similarity]
site_cons/site_tools/asymptote.py [moved from tex/site_cons/site_tools/asymptote.py with 100% similarity]
site_cons/site_tools/gnuplot.py [moved from tex/site_cons/site_tools/gnuplot.py with 100% similarity]
site_cons/site_tools/pymol.py [moved from tex/site_cons/site_tools/pymol.py with 100% similarity]
src/SConscript [moved from tex/src/SConscript with 100% similarity]
src/apparatus/afm.tex [moved from tex/src/apparatus/afm.tex with 100% similarity]
src/apparatus/cantilever-calib.tex [moved from tex/src/apparatus/cantilever-calib.tex with 100% similarity]
src/apparatus/main.tex [moved from tex/src/apparatus/main.tex with 100% similarity]
src/apparatus/polymer-synthesis.tex [moved from tex/src/apparatus/polymer-synthesis.tex with 100% similarity]
src/apparatus/procedure.tex [moved from tex/src/apparatus/procedure.tex with 100% similarity]
src/apparatus/sample-preparation.tex [moved from tex/src/apparatus/sample-preparation.tex with 100% similarity]
src/blurb/abstract.tex [moved from tex/src/blurb/abstract.tex with 100% similarity]
src/blurb/acknowledgments.tex [moved from tex/src/blurb/acknowledgments.tex with 100% similarity]
src/blurb/dedications.tex [moved from tex/src/blurb/dedications.tex with 100% similarity]
src/blurb/hayley_and_heaven.jpg [moved from tex/src/blurb/hayley_and_heaven.jpg with 100% similarity]
src/blurb/vita.tex [moved from tex/src/blurb/vita.tex with 100% similarity]
src/cantilever-calib/README [moved from tex/src/cantilever-calib/README with 100% similarity]
src/cantilever-calib/contour_integration.tex [moved from tex/src/cantilever-calib/contour_integration.tex with 100% similarity]
src/cantilever-calib/integrals.tex [moved from tex/src/cantilever-calib/integrals.tex with 100% similarity]
src/cantilever-calib/main.bib [moved from tex/src/cantilever-calib/main.bib with 100% similarity]
src/cantilever-calib/main.tex [moved from tex/src/cantilever-calib/main.tex with 100% similarity]
src/cantilever-calib/overview.tex [moved from tex/src/cantilever-calib/overview.tex with 100% similarity]
src/cantilever-calib/setup_general.tex [moved from tex/src/cantilever-calib/setup_general.tex with 100% similarity]
src/cantilever-calib/solve_general.tex [moved from tex/src/cantilever-calib/solve_general.tex with 100% similarity]
src/cantilever-calib/solve_highly_damped.tex [moved from tex/src/cantilever-calib/solve_highly_damped.tex with 100% similarity]
src/cantilever-calib/test/Lorentz_root.py [moved from tex/src/cantilever-calib/test/Lorentz_root.py with 100% similarity]
src/cantilever-calib/test/SConscript [moved from tex/src/cantilever-calib/test/SConscript with 100% similarity]
src/cantilever-calib/test/locate_roots.py [moved from tex/src/cantilever-calib/test/locate_roots.py with 100% similarity]
src/cantilever-calib/test/test_integral.py [moved from tex/src/cantilever-calib/test/test_integral.py with 100% similarity]
src/cantilever-calib/test/test_roots.py [moved from tex/src/cantilever-calib/test/test_roots.py with 100% similarity]
src/cantilever/discussion.tex [moved from tex/src/cantilever/discussion.tex with 100% similarity]
src/cantilever/main.tex [moved from tex/src/cantilever/main.tex with 100% similarity]
src/cantilever/methods.tex [moved from tex/src/cantilever/methods.tex with 100% similarity]
src/cantilever/motivation.tex [moved from tex/src/cantilever/motivation.tex with 100% similarity]
src/cantilever/simulations.tex [moved from tex/src/cantilever/simulations.tex with 100% similarity]
src/cantilever/theory.tex [moved from tex/src/cantilever/theory.tex with 100% similarity]
src/contour-space/main.tex [moved from tex/src/contour-space/main.tex with 100% similarity]
src/figures/SConscript [moved from tex/src/figures/SConscript with 100% similarity]
src/figures/asy/SConscript [moved from tex/src/figures/asy/SConscript with 100% similarity]
src/figures/asy/asyprocess [moved from tex/src/figures/asy/asyprocess with 100% similarity]
src/figures/asy/wtk_graph.asy [moved from tex/src/figures/asy/wtk_graph.asy with 100% similarity]
src/figures/biotin-streptavidin/1SWE.pdb [moved from tex/src/figures/biotin-streptavidin/1SWE.pdb with 100% similarity]
src/figures/biotin-streptavidin/1SWE.pml [moved from tex/src/figures/biotin-streptavidin/1SWE.pml with 100% similarity]
src/figures/biotin-streptavidin/SConscript [moved from tex/src/figures/biotin-streptavidin/SConscript with 100% similarity]
src/figures/calibration-concept-map/SConscript [moved from tex/src/figures/calibration-concept-map/SConscript with 100% similarity]
src/figures/calibration-concept-map/concept_map.dot [moved from tex/src/figures/calibration-concept-map/concept_map.dot with 100% similarity]
src/figures/cantilever-data/SConscript [moved from tex/src/figures/cantilever-data/SConscript with 100% similarity]
src/figures/cantilever-data/avg_data.py [moved from tex/src/figures/cantilever-data/avg_data.py with 100% similarity]
src/figures/cantilever-data/data/raw [moved from tex/src/figures/cantilever-data/data/raw with 100% similarity]
src/figures/cantilever-data/extract_f_v_k_data.sh [moved from tex/src/figures/cantilever-data/extract_f_v_k_data.sh with 100% similarity]
src/figures/cantilever-data/fit_data.py [moved from tex/src/figures/cantilever-data/fit_data.py with 100% similarity]
src/figures/cantilever-data/get_loading_rates.py [moved from tex/src/figures/cantilever-data/get_loading_rates.py with 100% similarity]
src/figures/cantilever-data/get_v_dep.sh [moved from tex/src/figures/cantilever-data/get_v_dep.sh with 100% similarity]
src/figures/cantilever-data/loading-rate.asy [moved from tex/src/figures/cantilever-data/loading-rate.asy with 100% similarity]
src/figures/cantilever-data/make_v_dep_plots.sh [moved from tex/src/figures/cantilever-data/make_v_dep_plots.sh with 100% similarity]
src/figures/cantilever-sim/SConscript [moved from tex/src/figures/cantilever-sim/SConscript with 100% similarity]
src/figures/cantilever-sim/i-dep.asy [moved from tex/src/figures/cantilever-sim/i-dep.asy with 100% similarity]
src/figures/cantilever-sim/i-dep.d/i_dep_0.1_1_1e-6 [moved from tex/src/figures/cantilever-sim/i-dep.d/i_dep_0.1_1_1e-6 with 100% similarity]
src/figures/cantilever-sim/i-dep.d/i_dep_0.1_30_1e-6 [moved from tex/src/figures/cantilever-sim/i-dep.d/i_dep_0.1_30_1e-6 with 100% similarity]
src/figures/cantilever-sim/i-dep.d/i_dep_127_30_1e-6 [moved from tex/src/figures/cantilever-sim/i-dep.d/i_dep_127_30_1e-6 with 100% similarity]
src/figures/cantilever-sim/i-dep.d/i_dep_127_8_1e-6 [moved from tex/src/figures/cantilever-sim/i-dep.d/i_dep_127_8_1e-6 with 100% similarity]
src/figures/cantilever-sim/i-dep.d/i_dep_27_30_1e-6 [moved from tex/src/figures/cantilever-sim/i-dep.d/i_dep_27_30_1e-6 with 100% similarity]
src/figures/cantilever-sim/i-dep.d/i_dep_27_8_1e-6 [moved from tex/src/figures/cantilever-sim/i-dep.d/i_dep_27_8_1e-6 with 100% similarity]
src/figures/cantilever-sim/loading-rate.asy [moved from tex/src/figures/cantilever-sim/loading-rate.asy with 100% similarity]
src/figures/cantilever-sim/loading-rate.d/loading_rate_dep_0.1_1 [moved from tex/src/figures/cantilever-sim/loading-rate.d/loading_rate_dep_0.1_1 with 100% similarity]
src/figures/cantilever-sim/loading-rate.d/loading_rate_dep_0.1_30 [moved from tex/src/figures/cantilever-sim/loading-rate.d/loading_rate_dep_0.1_30 with 100% similarity]
src/figures/cantilever-sim/loading-rate.d/loading_rate_dep_127_30 [moved from tex/src/figures/cantilever-sim/loading-rate.d/loading_rate_dep_127_30 with 100% similarity]
src/figures/cantilever-sim/loading-rate.d/loading_rate_dep_127_8 [moved from tex/src/figures/cantilever-sim/loading-rate.d/loading_rate_dep_127_8 with 100% similarity]
src/figures/cantilever-sim/loading-rate.d/loading_rate_dep_27_30 [moved from tex/src/figures/cantilever-sim/loading-rate.d/loading_rate_dep_27_30 with 100% similarity]
src/figures/cantilever-sim/loading-rate.d/loading_rate_dep_27_8 [moved from tex/src/figures/cantilever-sim/loading-rate.d/loading_rate_dep_27_8 with 100% similarity]
src/figures/cantilever-sim/stiffness.d/stiffness_data-127_8 [moved from tex/src/figures/cantilever-sim/stiffness.d/stiffness_data-127_8 with 100% similarity]
src/figures/cantilever-sim/stiffness.d/stiffness_data-27_8 [moved from tex/src/figures/cantilever-sim/stiffness.d/stiffness_data-27_8 with 100% similarity]
src/figures/cantilever-sim/stiffness.d/stiffness_force-127_8 [moved from tex/src/figures/cantilever-sim/stiffness.d/stiffness_force-127_8 with 100% similarity]
src/figures/cantilever-sim/stiffness.d/stiffness_force-27_8 [moved from tex/src/figures/cantilever-sim/stiffness.d/stiffness_force-27_8 with 100% similarity]
src/figures/cantilever-sim/stiffness.d/stiffness_stiffness-127_8 [moved from tex/src/figures/cantilever-sim/stiffness.d/stiffness_stiffness-127_8 with 100% similarity]
src/figures/cantilever-sim/stiffness.d/stiffness_stiffness-27_8 [moved from tex/src/figures/cantilever-sim/stiffness.d/stiffness_stiffness-27_8 with 100% similarity]
src/figures/cantilever-sim/v-dep.asy [moved from tex/src/figures/cantilever-sim/v-dep.asy with 100% similarity]
src/figures/cantilever-sim/v-dep.d/v_dep_0.1_1 [moved from tex/src/figures/cantilever-sim/v-dep.d/v_dep_0.1_1 with 100% similarity]
src/figures/cantilever-sim/v-dep.d/v_dep_0.1_30 [moved from tex/src/figures/cantilever-sim/v-dep.d/v_dep_0.1_30 with 100% similarity]
src/figures/cantilever-sim/v-dep.d/v_dep_127_30 [moved from tex/src/figures/cantilever-sim/v-dep.d/v_dep_127_30 with 100% similarity]
src/figures/cantilever-sim/v-dep.d/v_dep_127_8 [moved from tex/src/figures/cantilever-sim/v-dep.d/v_dep_127_8 with 100% similarity]
src/figures/cantilever-sim/v-dep.d/v_dep_27_30 [moved from tex/src/figures/cantilever-sim/v-dep.d/v_dep_27_30 with 100% similarity]
src/figures/cantilever-sim/v-dep.d/v_dep_27_8 [moved from tex/src/figures/cantilever-sim/v-dep.d/v_dep_27_8 with 100% similarity]
src/figures/contour/SConscript [moved from tex/src/figures/contour/SConscript with 100% similarity]
src/figures/contour/contour.asy [moved from tex/src/figures/contour/contour.asy with 100% similarity]
src/figures/expt-sawtooth/NOTES [moved from tex/src/figures/expt-sawtooth/NOTES with 100% similarity]
src/figures/expt-sawtooth/SConscript [moved from tex/src/figures/expt-sawtooth/SConscript with 100% similarity]
src/figures/expt-sawtooth/expt-sawtooth.asy [moved from tex/src/figures/expt-sawtooth/expt-sawtooth.asy with 100% similarity]
src/figures/expt-sawtooth/expt.dat [moved from tex/src/figures/expt-sawtooth/expt.dat with 100% similarity]
src/figures/expt-sawtooth/sawmodel.xml [moved from tex/src/figures/expt-sawtooth/sawmodel.xml with 100% similarity]
src/figures/fit-space/Best_2002_detailed_unfolding_pathway/fig3.ppm [moved from tex/src/figures/fit-space/Best_2002_detailed_unfolding_pathway/fig3.ppm with 100% similarity]
src/figures/fit-space/Best_2002_detailed_unfolding_pathway/fig3a.clicks [moved from tex/src/figures/fit-space/Best_2002_detailed_unfolding_pathway/fig3a.clicks with 100% similarity]
src/figures/fit-space/Best_2002_detailed_unfolding_pathway/fig3a.dat [moved from tex/src/figures/fit-space/Best_2002_detailed_unfolding_pathway/fig3a.dat with 100% similarity]
src/figures/fit-space/Best_2002_detailed_unfolding_pathway/fig3a.summary [moved from tex/src/figures/fit-space/Best_2002_detailed_unfolding_pathway/fig3a.summary with 100% similarity]
src/figures/fit-space/Best_2002_detailed_unfolding_pathway/king_expt.data [moved from tex/src/figures/fit-space/Best_2002_detailed_unfolding_pathway/king_expt.data with 100% similarity]
src/figures/fit-space/Best_2002_detailed_unfolding_pathway/king_extrap.data [moved from tex/src/figures/fit-space/Best_2002_detailed_unfolding_pathway/king_extrap.data with 100% similarity]
src/figures/fit-space/Best_2002_detailed_unfolding_pathway/king_sim-566.dat [moved from tex/src/figures/fit-space/Best_2002_detailed_unfolding_pathway/king_sim-566.dat with 100% similarity]
src/figures/fit-space/Best_2002_detailed_unfolding_pathway/loglog_to_normal.py [moved from tex/src/figures/fit-space/Best_2002_detailed_unfolding_pathway/loglog_to_normal.py with 100% similarity]
src/figures/fit-space/SConscript [moved from tex/src/figures/fit-space/SConscript with 100% similarity]
src/figures/fit-space/data [moved from tex/src/figures/fit-space/data with 100% similarity]
src/figures/fit-space/extract_fit_valley.py [moved from tex/src/figures/fit-space/extract_fit_valley.py with 100% similarity]
src/figures/fit-space/fit-valley.asy [moved from tex/src/figures/fit-space/fit-valley.asy with 100% similarity]
src/figures/fit-space/king_vs_best.asy [moved from tex/src/figures/fit-space/king_vs_best.asy with 100% similarity]
src/figures/fit-space/king_vs_best.gp [moved from tex/src/figures/fit-space/king_vs_best.gp with 100% similarity]
src/figures/fit-space/means [moved from tex/src/figures/fit-space/means with 100% similarity]
src/figures/fit-space/means.gp [moved from tex/src/figures/fit-space/means.gp with 100% similarity]
src/figures/folded-model-hists/fig.pdf [moved from tex/src/figures/folded-model-hists/fig.pdf with 100% similarity]
src/figures/i27/1TIT.pdb [moved from tex/src/figures/i27/1TIT.pdb with 100% similarity]
src/figures/i27/1TIT.pml [moved from tex/src/figures/i27/1TIT.pml with 100% similarity]
src/figures/i27/SConscript [moved from tex/src/figures/i27/SConscript with 100% similarity]
src/figures/kappa-sawteeth/SConscript [moved from tex/src/figures/kappa-sawteeth/SConscript with 100% similarity]
src/figures/kappa-sawteeth/k-0.001.dat [moved from tex/src/figures/kappa-sawteeth/k-0.001.dat with 100% similarity]
src/figures/kappa-sawteeth/k-0.01.dat [moved from tex/src/figures/kappa-sawteeth/k-0.01.dat with 100% similarity]
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src/figures/kappa-sawteeth/k-1.dat [moved from tex/src/figures/kappa-sawteeth/k-1.dat with 100% similarity]
src/figures/kappa-sawteeth/k-10.dat [moved from tex/src/figures/kappa-sawteeth/k-10.dat with 100% similarity]
src/figures/kappa-sawteeth/kappa-sawteeth.asy [moved from tex/src/figures/kappa-sawteeth/kappa-sawteeth.asy with 100% similarity]
src/figures/main.bib [moved from tex/src/figures/main.bib with 100% similarity]
src/figures/order-dep/SConscript [moved from tex/src/figures/order-dep/SConscript with 100% similarity]
src/figures/order-dep/data/hist3i.hist [moved from tex/src/figures/order-dep/data/hist3i.hist with 100% similarity]
src/figures/order-dep/data/hist3i.note [moved from tex/src/figures/order-dep/data/hist3i.note with 100% similarity]
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