hooke.git
9 years agotest/data/vclamp_jpk/README: Document sample versions wtk
W. Trevor King [Tue, 19 Feb 2013 12:57:16 +0000 (07:57 -0500)]
test/data/vclamp_jpk/README: Document sample versions

Now you don't have to poke through the zipfile headers when you're
looking for samples of a particular version.

9 years agotest:tutorial: fix ".hg" -> ".git" in doctest
W. Trevor King [Mon, 19 Nov 2012 12:54:25 +0000 (07:54 -0500)]
test:tutorial: fix ".hg" -> ".git" in doctest

9 years agotest:tutorial: add 0x05120005 to doctest
W. Trevor King [Mon, 19 Nov 2012 12:50:30 +0000 (07:50 -0500)]
test:tutorial: add 0x05120005 to doctest

This should have happend in

  commit 434e8c556602a9f211396f5549bcc81527f51d80
  Author: W. Trevor King <wking@drexel.edu>
  Date:   Thu Apr 21 08:12:27 2011 -0400

    Initial attempt at PicoForce 0x05120005 support.

9 years agoConvert "NaN" -> "nan" to catch up with Numpy 1.6
W. Trevor King [Mon, 19 Nov 2012 12:35:48 +0000 (07:35 -0500)]
Convert "NaN" -> "nan" to catch up with Numpy 1.6

This changed with Numpy commit:

  commit 1985497ddd1c179d5ae4b7ba061a8b8c5540f543
  Author: Pauli Virtanen <pav@iki.fi>
  Date:   Sun Jul 18 17:17:58 2010 +0000

    BUG: core: format 'nan' and 'inf' also in array repr by default (#1050)

9 years agotest:note: add 0x05120005 to doctest
W. Trevor King [Mon, 19 Nov 2012 12:28:23 +0000 (07:28 -0500)]
test:note: add 0x05120005 to doctest

This should have happend in

  commit 434e8c556602a9f211396f5549bcc81527f51d80
  Author: W. Trevor King <wking@drexel.edu>
  Date:   Thu Apr 21 08:12:27 2011 -0400

    Initial attempt at PicoForce 0x05120005 support.

9 years agotest:apply_command_stack_to_playlist: add 0x05120005 to doctest
W. Trevor King [Mon, 19 Nov 2012 12:26:30 +0000 (07:26 -0500)]
test:apply_command_stack_to_playlist: add 0x05120005 to doctest

This should have happend in

  commit 434e8c556602a9f211396f5549bcc81527f51d80
  Author: W. Trevor King <wking@drexel.edu>
  Date:   Thu Apr 21 08:12:27 2011 -0400

    Initial attempt at PicoForce 0x05120005 support.

9 years agoConvert from "print ..." to "print(...)"
W. Trevor King [Mon, 19 Nov 2012 11:48:52 +0000 (06:48 -0500)]
Convert from "print ..." to "print(...)"

Also convert "'...' % (...)" to "'...'.format(...)".

These bring us up to date with Python 2.7, and will make future
porting to Python 3 less painful.

9 years agohooke:util:fft: remove in favor of my external FFT-tools package
W. Trevor King [Mon, 19 Nov 2012 10:18:03 +0000 (05:18 -0500)]
hooke:util:fft: remove in favor of my external FFT-tools package

9 years agoRan update-copyright.py
W. Trevor King [Sun, 18 Nov 2012 20:23:11 +0000 (15:23 -0500)]
Ran update-copyright.py

Changed my drexel address to tremily and added an address for Richard
Naud (both read from .mailmap).

9 years ago.update-copyright.conf: update to pipe separators and {project}
W. Trevor King [Sun, 18 Nov 2012 20:17:53 +0000 (15:17 -0500)]
.update-copyright.conf: update to pipe separators and {project}

This brings the config file up to speed with the following
update-copyright commits:

  commit 3c68a1a48419d8b2bbc2ce0e7f1700b996ec30e9
  Author: W. Trevor King <wking@tremily.us>
  Date:   Fri Oct 19 21:52:48 2012 -0400

    project: for consistency, also separate ignored paths with pipes

  commit b50d5d2168a07cbbf216e7f556a8fcf316f32545
  Author: W. Trevor King <wking@tremily.us>
  Date:   Thu Oct 25 17:35:11 2012 -0400

    project|utils: expand info into kwargs for format().

9 years agoReplace hooke.util.igorbinarywave with external igor package.
W. Trevor King [Mon, 20 Aug 2012 18:09:06 +0000 (14:09 -0400)]
Replace hooke.util.igorbinarywave with external igor package.

http://pypi.python.org/pypi/igor

Now that This way we share a more general package instead of rolling
our own.

Most of the changes to the mfp3d driver are due to the fact that the
igor package reads the IBW into a single dict (vs. three dicts for
igorbinarywave), and some of the keys have changed.  The dimension
labels have also changed a bit, since ...['wave']['labels'][1] is

  ['', 'Raw', 'Defl', 'LVDT']

instead of the old

  ['Raw', 'Defl', 'LVDT']

The blank label is for labeling all the columns.  From WaveMetrics'
TN003:

  A 3 point 1D wave has 4 dimension labels. The first dimension label
  is the label for the dimension as a whole. The next three dimension
  labels are the labels for rows 0, 1, and 2.

So the labels are:

  ['', 'Raw', 'Defl', 'LVDT']
   ^    ^      ^       ^-- column 2
   |    |      `-- column 1
   |    `-- column 0
   `-- columns as a whole

9 years agoMove wxversion.select call to hooke.ui.gui and remove evtmgr import.
W. Trevor King [Mon, 20 Aug 2012 17:27:56 +0000 (13:27 -0400)]
Move wxversion.select call to hooke.ui.gui and remove evtmgr import.

This ensures wxversion.select gets called before anyone has a change
to import wx.  evtmgr hasn't been used since

  commit bbf2b7eb99e94cf82de4c4160c9fdf8702cd1ba4
  Author: W. Trevor King <wking@drexel.edu>
  Date:   Mon Aug 2 10:56:10 2010 -0400

    Updated gui.panel.note and simplified hooke.plugin.note.

9 years agoAdd `setup.py sdist` side effects to .gitignore.
W. Trevor King [Mon, 20 Aug 2012 15:13:10 +0000 (11:13 -0400)]
Add `setup.py sdist` side effects to .gitignore.

10 years agoChange my email address from drexel.edu to tremily.us.
W. Trevor King [Wed, 18 Apr 2012 17:18:16 +0000 (13:18 -0400)]
Change my email address from drexel.edu to tremily.us.

10 years agoAdd a `Delete` button to the GUI NavBar, and cleanup deletion callbacks.
W. Trevor King [Thu, 8 Mar 2012 16:04:28 +0000 (11:04 -0500)]
Add a `Delete` button to the GUI NavBar, and cleanup deletion callbacks.

The most confusing part of this change is the adjustment to
`Default.txt`.  The NavBar was not expanding to display the new button
(which was avialable via a flyout), so I had to manually adjust the
default perspective.  Because we load the default perspective after
setting up the GUI, any changes in the code (e.g. setting a reasonable
width) get clobbered later by `Default.txt`.  Anyhow, the change I
made to `Default.txt` was to change the toolbar's `bestw` from 100 to 300.

10 years agoUse Python AUI implementation (instead of C++) in hooke.ui.gui.
W. Trevor King [Thu, 8 Mar 2012 15:40:54 +0000 (10:40 -0500)]
Use Python AUI implementation (instead of C++) in hooke.ui.gui.

10 years agoCleanup command stack handling in hooke.plugin.polymer_fit.
W. Trevor King [Thu, 8 Mar 2012 15:37:23 +0000 (10:37 -0500)]
Cleanup command stack handling in hooke.plugin.polymer_fit.

10 years agoAdd `peak extraction method` option to `polymer fit` command.
W. Trevor King [Thu, 8 Mar 2012 15:35:22 +0000 (10:35 -0500)]
Add `peak extraction method` option to `polymer fit` command.

10 years agoMake `index` argument optional and return curve in `remove curve from playlist`.
W. Trevor King [Thu, 8 Mar 2012 15:24:03 +0000 (10:24 -0500)]
Make `index` argument optional and return curve in `remove curve from playlist`.

10 years agoAdd Richard Naud's email address to .update-copyright.conf.
W. Trevor King [Thu, 8 Mar 2012 15:11:46 +0000 (10:11 -0500)]
Add Richard Naud's email address to .update-copyright.conf.

10 years agoUpdate download URL from einstein to tremily.
W. Trevor King [Wed, 22 Feb 2012 16:53:47 +0000 (11:53 -0500)]
Update download URL from einstein to tremily.

Also made a few reStructuredText corrections in the README.

10 years agoFix download URL to point to Git source in setup.py.
W. Trevor King [Fri, 17 Feb 2012 03:10:02 +0000 (22:10 -0500)]
Fix download URL to point to Git source in setup.py.

10 years agoFix hooke.version(4) with missing patch index.
W. Trevor King [Fri, 17 Feb 2012 03:08:53 +0000 (22:08 -0500)]
Fix hooke.version(4) with missing patch index.

10 years agoRespect UTF-8 README in setup.py.
W. Trevor King [Fri, 17 Feb 2012 02:50:28 +0000 (21:50 -0500)]
Respect UTF-8 README in setup.py.

Also make a few minor changes to hooke/__init__.py so I can use

  $ python3 setup.py register -r pypi

to push the new metadata to PyPI.  Using Python 3 works around
http://bugs.python.org/issue13114.

I also had to explicitly convert classifiers to a list to avoid:
  Server response (400): Invalid classifier "<filter object at 0x...>"

10 years agoCleanup reStructuredText in the README.
W. Trevor King [Fri, 17 Feb 2012 01:57:17 +0000 (20:57 -0500)]
Cleanup reStructuredText in the README.

10 years agoUpdate docs to point to Git repository.
W. Trevor King [Thu, 16 Feb 2012 23:18:08 +0000 (18:18 -0500)]
Update docs to point to Git repository.

10 years agoRename REAMDE -> README in test/data/vclamp_mfp3d.
W. Trevor King [Thu, 16 Feb 2012 23:18:08 +0000 (18:18 -0500)]
Rename REAMDE -> README in test/data/vclamp_mfp3d.

10 years agoRun update-copyright.py.
W. Trevor King [Thu, 16 Feb 2012 20:02:17 +0000 (15:02 -0500)]
Run update-copyright.py.

10 years agoTransition to my external update-copyright package.
W. Trevor King [Thu, 16 Feb 2012 20:00:42 +0000 (15:00 -0500)]
Transition to my external update-copyright package.

http://pypi.python.org/pypi/update-copyright/

10 years agoRan update_copyright.py.
W. Trevor King [Sun, 8 Jan 2012 23:44:46 +0000 (18:44 -0500)]
Ran update_copyright.py.

10 years agoSimplify ALIASES and add email addresses to AUTHOR_HACKS in update_copyright.py.
W. Trevor King [Sun, 8 Jan 2012 23:42:09 +0000 (18:42 -0500)]
Simplify ALIASES and add email addresses to AUTHOR_HACKS in update_copyright.py.

Now that we're versioning with Git, we can use .mailmap instead of
ALIASES.  The adjustments to AUTHOR_HACKS avoid duplicated entries
(author vs. author and email).

10 years agoAdd .mailmap to standardize author names and emails for update_copyright.py.
W. Trevor King [Sun, 8 Jan 2012 17:05:13 +0000 (12:05 -0500)]
Add .mailmap to standardize author names and emails for update_copyright.py.

The format of the .mailmap file is described in git-shortlog's man page
under "MAPPING AUTHORS".

10 years agoChange VCS from Mercurial to Git in update_copyright.py.
W. Trevor King [Sun, 8 Jan 2012 15:57:52 +0000 (10:57 -0500)]
Change VCS from Mercurial to Git in update_copyright.py.

10 years agoConvert .hgignore to .gitignore now that I'm versioning with Git.
W. Trevor King [Sun, 8 Jan 2012 15:22:47 +0000 (10:22 -0500)]
Convert .hgignore to .gitignore now that I'm versioning with Git.

10 years agoRemove debugging *.dat file output from curve plugin.
W. Trevor King [Mon, 14 Nov 2011 21:24:29 +0000 (16:24 -0500)]
Remove debugging *.dat file output from curve plugin.

10 years agoMove everything except `GUI` from `hooke.ui.gui` to `hooke.ui.gui.interface`.
W. Trevor King [Fri, 11 Nov 2011 15:23:21 +0000 (10:23 -0500)]
Move everything except `GUI` from `hooke.ui.gui` to `hooke.ui.gui.interface`.

This allows Hooke to be used in command line mode without requiring a
suitable wxPython installation.

10 years agoRemove nominal wxWidgets 2.8 support.
W. Trevor King [Fri, 11 Nov 2011 15:03:35 +0000 (10:03 -0500)]
Remove nominal wxWidgets 2.8 support.

I was getting
  'MouseEvent' object has no attribute 'shiftDown'
when I tried to run the current GUI on wxWidgets 2.8.10.1.

10 years agoExpand ~ in the glob path of 'glob curves to playlist'.
W. Trevor King [Fri, 11 Nov 2011 11:51:47 +0000 (06:51 -0500)]
Expand ~ in the glob path of 'glob curves to playlist'.

10 years agoAdd 'scaled column addition' command.
W. Trevor King [Fri, 11 Nov 2011 08:01:00 +0000 (03:01 -0500)]
Add 'scaled column addition' command.

Example usage: removing linear drifts with

  scaled_column_addition --block retract
    --input_column_1 'surface deflection (m)'
    --input_column_2 'surface distance (m)'
    --output_column 'flattened surface deflection (m)
    --scale_1 1 --scale_2 -1
    --scale_2_name 'surface deflection offset|non-contact slope'

Also:
* Allow `None` as a column name in ColumnAccessCommand._get_column().
* Add 'force zero non-contact slope' option to SurfaceContactCommand.
* Convert slopes from surface contact fit from deflection/point to
  deflection/distance.
* Fix the returned deflection offset so it is a float and not a
  length-one tuple (by removing the trailing comma).

10 years agoInitial work transitioning to wxWidgets 2.9.
W. Trevor King [Fri, 11 Nov 2011 04:17:00 +0000 (23:17 -0500)]
Initial work transitioning to wxWidgets 2.9.

m_shiftDown -> shiftDown in wxWidgets 2.9.0.1 [1]
NamedColor alias for NamedColour removed in in wxWidgets [version?] [2]

[1]: http://www.wxpython.org/recentchanges.php
[2]: http://svn.wxwidgets.org/viewvc/wx/wxPython/trunk/src/gtk/_gdi.py?r1=52881&r2=53838&pathrev=53838

10 years agoTemporary fix to hooke/driver/wtk.py now that data_logger is deprecated.
W. Trevor King [Thu, 10 Nov 2011 20:37:47 +0000 (15:37 -0500)]
Temporary fix to hooke/driver/wtk.py now that data_logger is deprecated.

10 years agoUse sys.stderr.write instead of the deprecated 'print >>' syntax in the tutorial...
W. Trevor King [Thu, 10 Nov 2011 20:39:12 +0000 (15:39 -0500)]
Use sys.stderr.write instead of the deprecated 'print >>' syntax in the tutorial plugin.

10 years agoAdjust NoteIndexList._index in .index() if it falls off the end of the list.
W. Trevor King [Thu, 10 Nov 2011 17:12:56 +0000 (12:12 -0500)]
Adjust NoteIndexList._index in .index() if it falls off the end of the list.

10 years agoCall 'remove curve from playlist' when deleting curves via the playlist panel.
W. Trevor King [Thu, 10 Nov 2011 17:03:39 +0000 (12:03 -0500)]
Call 'remove curve from playlist' when deleting curves via the playlist panel.

10 years agoFix 'remove curve from playlist' implementation.
W. Trevor King [Thu, 10 Nov 2011 17:01:57 +0000 (12:01 -0500)]
Fix 'remove curve from playlist' implementation.

10 years agoAdd GUI postprocessing for 'name playlist' so the new playlist shows up immediately.
W. Trevor King [Wed, 9 Nov 2011 20:04:47 +0000 (15:04 -0500)]
Add GUI postprocessing for 'name playlist' so the new playlist shows up immediately.

10 years agoDon't delete curve files through the GUI's delete function.
W. Trevor King [Wed, 9 Nov 2011 20:03:58 +0000 (15:03 -0500)]
Don't delete curve files through the GUI's delete function.

It is enough for them to be removed from the playlist.  There is no
need to touch the raw data file itself.

10 years agoStandardize playlist path expansion in hooke/playlist.py.
W. Trevor King [Wed, 9 Nov 2011 19:55:10 +0000 (14:55 -0500)]
Standardize playlist path expansion in hooke/playlist.py.

10 years agoAdd motivational blurb to command_stack docstring.
W. Trevor King [Tue, 11 Oct 2011 17:51:45 +0000 (13:51 -0400)]
Add motivational blurb to command_stack docstring.

10 years agoFix citating -> citing typo in doc/analysis.txt.
W. Trevor King [Tue, 11 Oct 2011 17:43:25 +0000 (13:43 -0400)]
Fix citating -> citing typo in doc/analysis.txt.

11 years agoRemove more invalid loop syntax from hooke/plugin/multifit.py.
W. Trevor King [Sun, 15 May 2011 15:52:58 +0000 (11:52 -0400)]
Remove more invalid loop syntax from hooke/plugin/multifit.py.

11 years agoFix invalid loop syntax in hooke/plugin/multifit.py.
W. Trevor King [Sun, 15 May 2011 15:32:48 +0000 (11:32 -0400)]
Fix invalid loop syntax in hooke/plugin/multifit.py.

11 years agoAdjust fit-parameter handling for the polymer_fit plugin.
W. Trevor King [Thu, 28 Apr 2011 16:30:10 +0000 (12:30 -0400)]
Adjust fit-parameter handling for the polymer_fit plugin.

This should have happened during

changeset:   820:b0d23a0bdaf7
branch:      wtk
user:        W. Trevor King <wking@drexel.edu>
date:        Thu Apr 28 07:49:26 2011 -0400
summary:     Adapt to handle scipy.optimize.leastsq for scipy >= 0.8.0.

11 years agoClean up and adjust names of commands requiring curve updates in the GUI.
W. Trevor King [Thu, 28 Apr 2011 12:34:14 +0000 (08:34 -0400)]
Clean up and adjust names of commands requiring curve updates in the GUI.

11 years agoRan update_copyright.py.
W. Trevor King [Thu, 28 Apr 2011 11:50:59 +0000 (07:50 -0400)]
Ran update_copyright.py.

11 years agoAdapt to handle scipy.optimize.leastsq for scipy >= 0.8.0.
W. Trevor King [Thu, 28 Apr 2011 11:49:26 +0000 (07:49 -0400)]
Adapt to handle scipy.optimize.leastsq for scipy >= 0.8.0.

For single-parameter fitting, leastsq() used to return the fitted
parameter as a float.  Now it returns it as a length-one array.  With
this commit, Hooke should work with either case.

11 years agoInitial attempt at PicoForce 0x05120005 support.
W. Trevor King [Thu, 21 Apr 2011 12:12:27 +0000 (08:12 -0400)]
Initial attempt at PicoForce 0x05120005 support.

11 years agoAdd Mercurial URL to README and use README as long_description,
W. Trevor King [Tue, 19 Apr 2011 20:50:27 +0000 (16:50 -0400)]
Add Mercurial URL to README and use README as long_description,

11 years agoMerge Veeco -> Bruker and NumPy/SciPy doc guide patches.
W. Trevor King [Tue, 14 Dec 2010 21:14:55 +0000 (16:14 -0500)]
Merge Veeco -> Bruker and NumPy/SciPy doc guide patches.

11 years agoUpdate URL for NumPy/SciPy documentation guide.
W. Trevor King [Tue, 14 Dec 2010 21:13:36 +0000 (16:13 -0500)]
Update URL for NumPy/SciPy documentation guide.

11 years agoVeeco -> Bruker since sale of metrology wing this August.
W. Trevor King [Fri, 19 Nov 2010 18:08:07 +0000 (13:08 -0500)]
Veeco -> Bruker since sale of metrology wing this August.

11 years agoBetter contact point detection now handles some initial vibrations.
W. Trevor King [Sat, 13 Nov 2010 13:31:53 +0000 (08:31 -0500)]
Better contact point detection now handles some initial vibrations.

11 years agoActually, filtering the copy directly is *almost* ok.
W. Trevor King [Thu, 11 Nov 2010 13:27:15 +0000 (08:27 -0500)]
Actually, filtering the copy directly is *almost* ok.

11 years agoUse hooke.command_by_name[...] in hooke.plugin.*.
W. Trevor King [Thu, 11 Nov 2010 13:15:54 +0000 (08:15 -0500)]
Use hooke.command_by_name[...] in hooke.plugin.*.

11 years agoOnly shallow copy when filtering a playlist.
W. Trevor King [Thu, 11 Nov 2010 13:13:09 +0000 (08:13 -0500)]
Only shallow copy when filtering a playlist.

We should iterate through the base playlist, because iterating over a
playlist that's having items removed is poorly defined.  However, if
were iterating through the input playlist and removing items from the
copy, we need a shallow copy so the item ids still match.  Curves can
belong to several playlists, so shallow copies are ok.

Another problem with the old version was that the _index was being
updated in the copy, not the current curve, so the
current_curve_callback() bit was *not* working.

11 years ago.`_setup_item` -> `._setup_item` in hooke.playlist.Playlist.unload.__doc__.
W. Trevor King [Thu, 11 Nov 2010 12:11:38 +0000 (07:11 -0500)]
.`_setup_item` -> `._setup_item` in hooke.playlist.Playlist.unload.__doc__.

11 years agoAdjust playlist curve setup to load curves after YAML restore.
W. Trevor King [Wed, 10 Nov 2010 18:10:42 +0000 (13:10 -0500)]
Adjust playlist curve setup to load curves after YAML restore.

11 years agoAdd yaml load test to hooke.curve.Data.
W. Trevor King [Wed, 10 Nov 2010 17:56:07 +0000 (12:56 -0500)]
Add yaml load test to hooke.curve.Data.

11 years agoexpanduser() in hooke.playlist.load().
W. Trevor King [Wed, 10 Nov 2010 16:13:32 +0000 (11:13 -0500)]
expanduser() in hooke.playlist.load().

11 years agoDon't save digests in the playlist file.
W. Trevor King [Tue, 9 Nov 2010 21:18:06 +0000 (16:18 -0500)]
Don't save digests in the playlist file.

They create dependency loops:
  digest_{i+1} = checksum(file with digest_i)
With the old way, exiting after
  $ hk.py -c 'new_playlist --output_playlist mylist'
          -c 'glob_curves_to_playlist ...*.curve'
          -c 'save_playlist --output mylist' -p
would complain of unsaved playlists.

11 years agodata_logger.normalize_logdir -> normalize_log_dir with data_logger v0.4.
W. Trevor King [Tue, 9 Nov 2010 20:24:47 +0000 (15:24 -0500)]
data_logger.normalize_logdir -> normalize_log_dir with data_logger v0.4.

11 years agoUpdate WTK driver links with git.php -> gitweb.cgi.
W. Trevor King [Tue, 9 Nov 2010 20:22:31 +0000 (15:22 -0500)]
Update WTK driver links with git.php -> gitweb.cgi.

11 years agoUpdate test/wtk_driver.py for data_logger version 0.4.
W. Trevor King [Tue, 9 Nov 2010 20:05:03 +0000 (15:05 -0500)]
Update test/wtk_driver.py for data_logger version 0.4.

11 years agoDon't use questions in the README section headings.
W. Trevor King [Wed, 3 Nov 2010 19:18:18 +0000 (15:18 -0400)]
Don't use questions in the README section headings.

11 years agoFixup reStructuredText in README.
W. Trevor King [Wed, 3 Nov 2010 19:14:48 +0000 (15:14 -0400)]
Fixup reStructuredText in README.

11 years agoExplain my Hooke ebuild in doc/install.txt.
W. Trevor King [Wed, 3 Nov 2010 18:41:49 +0000 (14:41 -0400)]
Explain my Hooke ebuild in doc/install.txt.

11 years agoRan update_copyright.py, updating hooke/ui/gui/dialog/string.py.
W. Trevor King [Wed, 3 Nov 2010 15:37:50 +0000 (11:37 -0400)]
Ran update_copyright.py, updating hooke/ui/gui/dialog/string.py.

11 years agoFix hg.py -> hk.py in setup.py.
W. Trevor King [Wed, 3 Nov 2010 15:36:52 +0000 (11:36 -0400)]
Fix hg.py -> hk.py in setup.py.

11 years agoMerged `igorbinarywave.py --not-strict` and playlist expanduser() commits.
W. Trevor King [Thu, 28 Oct 2010 16:43:35 +0000 (12:43 -0400)]
Merged `igorbinarywave.py --not-strict` and playlist expanduser() commits.

11 years agoAdd -n/--not-strict to igorbinarywave.py (currently for IBW files with non-empty...
W. Trevor King [Thu, 28 Oct 2010 16:39:29 +0000 (12:39 -0400)]
Add -n/--not-strict to igorbinarywave.py (currently for IBW files with non-empty padding).

11 years agoMove some playlist-related expanduser() calls from hooke.plugin.* to hooke.playlist...
W. Trevor King [Wed, 29 Sep 2010 16:41:23 +0000 (12:41 -0400)]
Move some playlist-related expanduser() calls from hooke.plugin.* to hooke.playlist and hooke.curve.

11 years agoUpdate hooke.playlist.FilePlaylist doctests for explicit_user_call.
W. Trevor King [Wed, 29 Sep 2010 14:27:48 +0000 (10:27 -0400)]
Update hooke.playlist.FilePlaylist doctests for explicit_user_call.

11 years agoUpdate hooke.command_stack.CommandStack doctests for explicit_user_call.
W. Trevor King [Wed, 29 Sep 2010 14:25:40 +0000 (10:25 -0400)]
Update hooke.command_stack.CommandStack doctests for explicit_user_call.

11 years agoCleanups so hooke/ui/gui/ passes unittests.
W. Trevor King [Wed, 29 Sep 2010 14:17:07 +0000 (10:17 -0400)]
Cleanups so hooke/ui/gui/ passes unittests.

11 years agoLog errors when instantiation fails in hooke.util.pluggable.construct_*().
W. Trevor King [Wed, 29 Sep 2010 14:08:00 +0000 (10:08 -0400)]
Log errors when instantiation fails in hooke.util.pluggable.construct_*().

11 years agoRelax doctest constraints on hooke.util.fit.ModelFitter.
W. Trevor King [Wed, 29 Sep 2010 13:53:30 +0000 (09:53 -0400)]
Relax doctest constraints on hooke.util.fit.ModelFitter.

I'm not sure of the reason behind the differences, but sometimes the
exit condition varies slightly depending on which test box I use.

11 years agoAdd os.path.expanduser() wrappers to user-supplied paths.
W. Trevor King [Wed, 29 Sep 2010 13:47:50 +0000 (09:47 -0400)]
Add os.path.expanduser() wrappers to user-supplied paths.

This allows things like
  [gui user interface]
  perspective path = ~/.hooke/resources/gui/perspective
to work as expected.

11 years agoZip files use slashes (not os.path.sep) for their path separator (JPK driver).
W. Trevor King [Wed, 29 Sep 2010 12:59:25 +0000 (08:59 -0400)]
Zip files use slashes (not os.path.sep) for their path separator (JPK driver).

11 years agoQuote backslash-containing arguments in doc/tutorial.py.
W. Trevor King [Wed, 29 Sep 2010 11:42:59 +0000 (07:42 -0400)]
Quote backslash-containing arguments in doc/tutorial.py.

11 years agoalbedomanu -> Manuel Gensler based on an email from the latter.
W. Trevor King [Wed, 15 Sep 2010 19:22:38 +0000 (15:22 -0400)]
albedomanu -> Manuel Gensler based on an email from the latter.

11 years agoUse `with Closing(...) as f:` in JPKDriver._zip_segment().
W. Trevor King [Thu, 9 Sep 2010 12:26:49 +0000 (08:26 -0400)]
Use `with Closing(...) as f:` in JPKDriver._zip_segment().

11 years agoExtended test/jpk_driver.py to test .jpk-data1D file reading.
W. Trevor King [Thu, 9 Sep 2010 12:24:58 +0000 (08:24 -0400)]
Extended test/jpk_driver.py to test .jpk-data1D file reading.

11 years agoExtent JPK driver to also read .jpk-data1D-file files.
W. Trevor King [Thu, 9 Sep 2010 11:37:03 +0000 (07:37 -0400)]
Extent JPK driver to also read .jpk-data1D-file files.

Also:
* Lowercase most JPK exception messages.
* Decode integer types to floats as specified by 'encoder'.
* Give the path to the old file when suggeesting an `out2jpk-force` upgrade.

11 years agoFix test/jpk_driver.py now that we can load each of the examples.
W. Trevor King [Wed, 8 Sep 2010 20:22:09 +0000 (16:22 -0400)]
Fix test/jpk_driver.py now that we can load each of the examples.

11 years agoEnsure unique segment names in the JPK driver.
W. Trevor King [Wed, 8 Sep 2010 20:21:39 +0000 (16:21 -0400)]
Ensure unique segment names in the JPK driver.

11 years agoFix distance_base_unit extraction in JPK driver for encoded data.
W. Trevor King [Wed, 8 Sep 2010 20:13:18 +0000 (16:13 -0400)]
Fix distance_base_unit extraction in JPK driver for encoded data.

11 years agoFix JPK list field splitting for empty lists.
W. Trevor King [Wed, 8 Sep 2010 20:09:23 +0000 (16:09 -0400)]
Fix JPK list field splitting for empty lists.

11 years agoOnly pass curve params out to segments if they exist.
W. Trevor King [Wed, 8 Sep 2010 20:02:24 +0000 (16:02 -0400)]
Only pass curve params out to segments if they exist.

11 years agoSkip some param translation in the JPK driver for channel-less segments.
W. Trevor King [Wed, 8 Sep 2010 19:48:22 +0000 (15:48 -0400)]
Skip some param translation in the JPK driver for channel-less segments.

11 years agoImprove handling of the base calibration slot units in JPK driver.
W. Trevor King [Wed, 8 Sep 2010 19:45:20 +0000 (15:45 -0400)]
Improve handling of the base calibration slot units in JPK driver.