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sawsim.git
2012-10-27 W. Trevor Kingefbfbf: upgrade to Bugs Everywhere Directory v1.5 master | commitdiff
2012-07-27 W. Trevor KingAdd --help, --stack, and --output to sawsim_plot_histog... | commitdiff
2012-06-28 W. Trevor KingFix $(BUILD) -> $(BUILD_DIR) in k_model_utils.c rule. | commitdiff
2012-05-18 W. Trevor KingAdd testing command line to the README. | commitdiff
2012-05-18 W. Trevor KingEnsure that printed histograms always have at least... | commitdiff
2012-04-18 W. Trevor KingChange my email address from drexel.edu to tremily.us. | commitdiff
2012-02-22 W. Trevor KingUpdate URLs from einstein to tremily. | commitdiff
2012-01-12 W. Trevor KingAdd bin/sawsim_plot_histogram_file.py and Histogram... | commitdiff
2011-12-06 W. Trevor KingRelax precision in pysawsim.histogram.Histogram bin_edg... | commitdiff
2011-09-16 W. Trevor KingAdd underscore to PYSAWSIM_LOG_LEVEL_MSG reference... | commitdiff
2011-09-16 W. Trevor KingAdd the PYSAWSIM_LOG_LEVEL environmental variable. | commitdiff
2011-09-13 W. Trevor KingClose parens in gamma calculation in manual's timescale... | commitdiff
2011-09-13 W. Trevor KingFix omega -> \omega in manual's timescale discussion. | commitdiff
2011-04-19 W. Trevor KingAdd download_url to setup.py. | commitdiff
2011-04-19 W. Trevor KingUse README for long_description in setup.py. | commitdiff
2011-04-19 W. Trevor KingAdd author information to setup.py. | commitdiff
2011-04-09 W. Trevor KingAdd --csv option to pysawsim.parameter_scan. | commitdiff
2011-04-01 W. Trevor KingAdd WORKER_POOL environmental option to facilitate... | commitdiff
2011-04-01 W. Trevor KingMerge commit 'origin/master' | commitdiff
2011-04-01 W. Trevor KingCorrect mpi4py URL. | commitdiff
2010-12-31 W. Trevor KingFix typo in setup.py which produced a 'pysawsim/manager... | commitdiff
2010-11-06 W. Trevor KingStandardize max step calculation and fit-parameter... | commitdiff
2010-11-06 W. Trevor KingWider bins and weaker comparisons allow bell_rate to... | commitdiff
2010-11-06 W. Trevor KingCompare theory vs. sim scaled by bin width (not theory... | commitdiff
2010-11-06 W. Trevor KingFix Gumbel normalization in pysawsim.test.bell_rate... | commitdiff
2010-11-06 W. Trevor KingEnsure that self.headings exists in Histogram, e.g... | commitdiff
2010-11-06 W. Trevor KingFor high K_0, the Bell model's <f> can be negative... | commitdiff
2010-11-06 W. Trevor KingMove Bell model unfolding rate test into pysawsim/test... | commitdiff
2010-11-05 W. Trevor KingUse verbose nosetests (to easily ensure tests are being... | commitdiff
2010-11-05 W. Trevor KingBe less specific about fit info in pysawsim.fit.ModelFi... | commitdiff
2010-11-05 W. Trevor Kingpysawsim/fit.py should not be executable. | commitdiff
2010-11-05 W. Trevor KingEscape LaTeX backslashes in pysawsim.test.constant_rate. | commitdiff
2010-11-05 W. Trevor KingNo need to give an explicit K in the pysawsim constant... | commitdiff
2010-11-05 W. Trevor KingAdd doctest call to pysawsim.test.constant_rate.test... | commitdiff
2010-11-05 W. Trevor Kingconstant_rate.py should not be executable. | commitdiff
2010-11-05 W. Trevor KingFixup pysawsim.test.constant_rate so it passes. | commitdiff
2010-11-05 W. Trevor KingOnly log WARNING level messages (and more urgent ones... | commitdiff
2010-11-05 W. Trevor KingForce bin_edges and counts to be numy arrays in Histogram. | commitdiff
2010-11-05 W. Trevor KingModelFitter.fit() should always return a list (even... | commitdiff
2010-11-05 W. Trevor KingMove constant unfolding rate test into pysawsim/test... | commitdiff
2010-11-05 W. Trevor KingAccount for binwidth in HistogramModelFitter doctest. | commitdiff
2010-11-05 W. Trevor KingSplit Histogram.analyze() out of Histogram.from_stream(). | commitdiff
2010-11-05 W. Trevor KingAdd pysawsim.test submodule (currently empty). | commitdiff
2010-11-04 W. Trevor KingMoved testing/common/fit.py to pysawsim/fit.py and... | commitdiff
2010-11-04 W. Trevor KingMerge remote branch 'pub/master' | commitdiff
2010-11-04 W. Trevor KingDisable epilog line wrapping in pysawsim/parameter_erro... | commitdiff
2010-11-03 W. Trevor KingThere *is* a Gentoo package for pbs_python: sys-cluster... | commitdiff
2010-11-03 W. Trevor KingUpdate Gentoo overlay info in README now that my overla... | commitdiff
2010-11-02 W. Trevor KingAdd a Gentoo package section to the README. | commitdiff
2010-11-02 W. Trevor KingBetter pysawsim.sawsim.SAWSIM detection via distutils... | commitdiff
2010-11-02 W. Trevor KingAdd simple setup.py for installing pysawsim. | commitdiff
2010-11-02 W. Trevor KingUse `rm -rf` instead of `rmdir` for `make clean`. | commitdiff
2010-11-02 W. Trevor KingCreate new phony Makefile targets all_doc and all_bin. | commitdiff
2010-11-01 W. Trevor KingFix : -> :: (rst markup) in README; document setupools... | commitdiff
2010-10-29 W. Trevor KingUse numpy.ndarray.sum() vs. __builtin__.sum() to comput... | commitdiff
2010-10-29 W. Trevor KingRemove cruft from testing/ in preparation for test... | commitdiff
2010-10-27 W. Trevor KingPython FAQ GIL link should point to GIL blurb, not... | commitdiff
2010-10-27 W. Trevor KingMerge remote branch 'borg/master' | commitdiff
2010-10-27 W. Trevor King-m/--manager now defaults to auto-select. | commitdiff
2010-10-27 W. Trevor KingAdd ability to import a default manager with get_manager(). | commitdiff
2010-10-27 W. Trevor Kingpysawsim/parameter_error.py should not be executable. | commitdiff
2010-10-27 W. Trevor KingAdd support for nosetests multiprocessing plugin. | commitdiff
2010-10-27 W. Trevor KingConvert tabs to spaces in pre-commit-pysawsim-check. | commitdiff
2010-10-27 W. Trevor KingUse single-quote delimited strings when possssible. | commitdiff
2010-10-27 W. Trevor KingHistogramMatcher should not plot residual comparisons... | commitdiff
2010-10-27 W. Trevor KingAdded bin/sawsim_param_error.py and pysawsim/parameter_... | commitdiff
2010-10-27 W. Trevor KingAssorted minor cleanups to pysawsim/parameter_scan.py. | commitdiff
2010-10-26 W. Trevor KingRemove some more velocity-specific cruft from pysawsim... | commitdiff
2010-10-26 W. Trevor Kingparameter_scan.py no longer needs to import anything... | commitdiff
2010-10-24 W. Trevor KingPrint the CommandError of failed sawsim executions. | commitdiff
2010-10-24 W. Trevor KingSave CommandError in failed InvokeJobs. | commitdiff
2010-10-24 W. Trevor KingAdd pysawsim.invoke.CommandError.__repr__() method... | commitdiff
2010-10-24 W. Trevor KingMake pysawsim.invoke.CommandError picklable, and add... | commitdiff
2010-10-24 W. Trevor KingFix cache shuffling (random.shuffle() shuffles in place... | commitdiff
2010-10-24 W. Trevor KingMove __version__ import from sawsim_histogram to sawsim... | commitdiff
2010-10-23 W. Trevor KingStart fleshing out "Related work" section in the manual. | commitdiff
2010-10-23 W. Trevor KingFix some long URLs that had been wrapped by pybtex. | commitdiff
2010-10-23 W. Trevor KingUpdate the README with more information about the pysaw... | commitdiff
2010-10-23 W. Trevor KingAdd namedtuple definition from Python 2.6's collections... | commitdiff
2010-10-23 W. Trevor KingMove `import with_statement` from sawsim_histogram... | commitdiff
2010-10-23 W. Trevor KingReplace EXAMPLE_HISTOGRAM_FILE_CONTENTS histograms... | commitdiff
2010-10-23 W. Trevor KingAdd epilogs to each OptionParser in pysawsim. | commitdiff
2010-10-23 W. Trevor KingMove sawsim running into a new pysawsim.sawsim.SawsimRu... | commitdiff
2010-10-21 W. Trevor KingAdd 'mpi' to pysawsim.manager.MANAGERS. | commitdiff
2010-10-21 W. Trevor KingRelax command-not-found doctest messages. | commitdiff
2010-10-21 W. Trevor KingMerge branch 'master' of physics.drexel.edu/~wking... | commitdiff
2010-10-21 W. Trevor KingFix dropped receive during ThreadManager._spawn_jobs. | commitdiff
2010-10-20 W. Trevor KingAdd autogenerated .be/id-cache to .gitignore. | commitdiff
2010-10-20 W. Trevor KingMerge branch 'master' of ssh://wking@einstein/~/public_... | commitdiff
2010-10-20 W. Trevor KingUpgrade .be bug cache to Bugs Everywhere Directory... | commitdiff
2010-10-20 W. Trevor KingDisable pysawsim.manager.subproc is multiprocessing... | commitdiff
2010-10-20 W. Trevor KingWork around namedtuple import for Pythons < 2.6. | commitdiff
2010-10-20 W. Trevor KingAlso cleanup local mpd if the pysawsim nosetests fail. | commitdiff
2010-10-20 W. Trevor KingAdd CC, CFLAGS, and LDFLAGS to the Makefile for easy... | commitdiff
2010-10-20 W. Trevor KingWork around missing MPD with a more elaborate pysawsim... | commitdiff
2010-10-20 W. Trevor KingKill off worker-node implementations of master code. | commitdiff
2010-10-20 W. Trevor KingAdd pysawsim.manager.mpi with an mpi4py-based manager. | commitdiff
2010-10-20 W. Trevor KingAdd link to Python wiki's parallel processing page. | commitdiff
2010-10-20 W. Trevor KingAdjust pysawsim.manager.pbs to skip most doctests if... | commitdiff
2010-10-20 W. Trevor KingRemove execute permission from pysawsim/manager/pbs.py. | commitdiff
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Sawsim, a Monte Carlo, mechanical protein unfolding simulator.