Move Bell model unfolding rate test into pysawsim/test/bell_rate.py.
authorW. Trevor King <wking@drexel.edu>
Fri, 5 Nov 2010 20:58:45 +0000 (16:58 -0400)
committerW. Trevor King <wking@drexel.edu>
Sat, 6 Nov 2010 13:29:22 +0000 (09:29 -0400)
commit837c425eaeccae280cc7f7784d03dfcfcb03678c
tree62649b60f5c1eb4fc1933908ca7b55e10f2a294d
parentef6cb3423ef3c91e955a1c90a148835829c45bbb
Move Bell model unfolding rate test into pysawsim/test/bell_rate.py.

Cleaned up model and parameter estimation.  See
  W. Trevor King, Meihong Su, and Guoliang Yang.  Monte Carlo
  simulation of mechanical unfolding of proteins based on a simple
  two-state model. International Journal of Biological Macromolecules
  46 (2010) 159-166.  doi: 10.1016/j.ijbiomac.2009.12.001
  (king10 in src/sawsim.bib)
for details.
pysawsim/constants.py
pysawsim/test/bell_rate.py [new file with mode: 0644]
pysawsim/test/constant_rate.py
testing/bell_rate/Makefile [deleted file]
testing/bell_rate/NOTES [deleted file]
testing/bell_rate/bell_rate.sh [deleted file]
testing/bell_rate/fit_bell [deleted file]
testing/bell_rate/params [deleted file]
testing/bell_rate/run_test.sh [deleted file]