calibcant/discussion.tex: Cite PNAS and Nature for data archival

diff --git a/src/calibcant/discussion.tex b/src/calibcant/discussion.tex
index 6f1eb2310a331c368562eae905675c8c2e94fd79..b40f38aff4fff4f3ce4f5b49381a4320e4e17dcb 100644 (file)
--- a/src/calibcant/discussion.tex
+++ b/src/calibcant/discussion.tex
@@ -171,13 +171,13 @@ the calculated $\kappa$.
 
 Scientific data is not thrown away after analysis.  Organizations may
 have standards for archival, and many journals require supporting data
 
 Scientific data is not thrown away after analysis.  Organizations may
 have standards for archival, and many journals require supporting data

-to be available on request for a number of years after
-publication\citep{TODO}.  Both the raw data and the experimental
-parameters used to collect need to be preserved, but managing this
-manually is tedious and error prone.  Lab notebooks rarely contain
-\emph{all} of the parameters used to collect and analyze a particular
-calibration.  Data collected with \calibcant\ is saved in
-\citetalias{hdf5} with the full configuration
+to be available on request after publication or archived in public
+databases\citep{pnas-data-archival,nature-data-archival}.  Both the
+raw data and the experimental parameters used to collect need to be
+preserved, but managing this manually is tedious and error prone.  Lab
+notebooks rarely contain \emph{all} of the parameters used to collect
+and analyze a particular calibration.  Data collected with
+\calibcant\ is saved in \citetalias{hdf5} with the full configuration

 (\cref{sec:pyafm:h5config}), bundling all of the information together
 in a single file.
 
 (\cref{sec:pyafm:h5config}), bundling all of the information together
 in a single file.
 

diff --git a/src/calibcant/main.bib b/src/calibcant/main.bib
index e4b95b29bed0101dd38e6ebd5ac68c89d1feb468..36c4c7847d7958b5d1dfe9a38bc4c8375309744f 100644 (file)
--- a/src/calibcant/main.bib
+++ b/src/calibcant/main.bib
@@ -1,5 +1,9 @@
 % Particular to this section.
 
 % Particular to this section.
 

+@string{NAT = "Nature"}
+@string{PNAS = "Proceedings of the National Academy of Sciences of the
+  United States of America"}
+

 @Misc{mathworld-lorentzian,
   author = "Eric W.\ Weisstein",
   title = "Lorentzian Function",
 @Misc{mathworld-lorentzian,
   author = "Eric W.\ Weisstein",
   title = "Lorentzian Function",


@@ -57,3 +61,44 @@
   month = "TODO",
   year = "TODO",
 }
   month = "TODO",
   year = "TODO",
 }

+
+@misc{ pnas-data-archival,
+  author = PNAS,
+  title = {{PNAS} Information for Authors},
+  year = 2013,
+  month = feb,
+  url = {http://www.pnas.org/site/misc/iforc.pdf},
+  excerpt = {From \emph{Journal Policies (x)}:
+    \begin{quote}
+       \emph{Materials and Data Availability.}  To allow others to
+       replicate and build on work published in PNAS, authors must
+       make materials, data, and associated protocols available to
+       readers.  \ldots Data not shown and personal communications
+       cannot be used to support claims in the work.  Authors are
+       encouraged to use SI to show all neces- sary data.  Authors are
+       encouraged to deposit as much of their data as possible in
+       publicly accessible databases.  \ldots
+    \end{quote}
+    },
+}
+
+@misc{ nature-data-archival,
+  author = NAT,
+  title = {Guide to Publication Policies of the Nature Journals},
+  year = 2013,
+  month = apr,
+  day = 30,
+  url = {http://www.nature.com/authors/gta.pdf},
+  excerpt = {From \emph{Sharing data sets}
+    \begin{quote}
+      A condition of publication in a Nature journal is that authors
+      are required to make materials, data and associated protocols
+      promptly available to others without undue qualifications.
+
+      Data sets must be made freely available to readers from the date
+      of publication, and must be provided to editors and
+      peer-reviewers at submission, for the purposes of evaluating the
+      manuscript.
+    \end{quote}
+  },
+}