Add examples/Marszalek_Fernandez_1999/titin_intermediate.sh.
authorW. Trevor King <wking@drexel.edu>
Thu, 14 Oct 2010 13:58:59 +0000 (09:58 -0400)
committerW. Trevor King <wking@drexel.edu>
Thu, 14 Oct 2010 14:01:17 +0000 (10:01 -0400)
examples/Marszalek_Fernandez_1999/titin_intermediate.sh [new file with mode: 0644]

diff --git a/examples/Marszalek_Fernandez_1999/titin_intermediate.sh b/examples/Marszalek_Fernandez_1999/titin_intermediate.sh
new file mode 100644 (file)
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+#!/bin/bash
+
+# rediculous parameters, but it vaguely resembles the Titin shoulder
+# from Marszalek...Fernandez 1999, "Mechanical unfolding intermediates
+# in titin modules.", Nature (402), 6757 p100.
+
+sawsim -v1e-6 \
+  -s cantilever,hooke,0.05 -N1 \
+  -s folded,null -N8 \
+  -s 'transition,wlc,{0.39e-9,1e-9}' \
+  -s 'unfolded,wlc,{0.39e-9,28e-9}' \
+  -s 'cantbind,null' -N1 \
+  -k 'folded,transition,bell,{1e-12,1e-9}' \
+  -k 'transition,folded,bell,{1e8,-1e-9}' \
+  -k 'transition,unfolded,bell,{3.3e-4,0.25e-9}' \
+  -k 'cantbind,unfolded,bell,{3.3e-6,0.25e-9}' \
+  -q cantbind -V