#
# This file is part of Hooke.
#
-# Hooke is free software: you can redistribute it and/or
-# modify it under the terms of the GNU Lesser General Public
-# License as published by the Free Software Foundation, either
-# version 3 of the License, or (at your option) any later version.
+# Hooke is free software: you can redistribute it and/or modify it
+# under the terms of the GNU Lesser General Public License as
+# published by the Free Software Foundation, either version 3 of the
+# License, or (at your option) any later version.
#
-# Hooke is distributed in the hope that it will be useful,
-# but WITHOUT ANY WARRANTY; without even the implied warranty of
-# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
-# GNU Lesser General Public License for more details.
+# Hooke is distributed in the hope that it will be useful, but WITHOUT
+# ANY WARRANTY; without even the implied warranty of MERCHANTABILITY
+# or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General
+# Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public
# License along with Hooke. If not, see
# <http://www.gnu.org/licenses/>.
"""
+>>> import os
>>> import os.path
>>> from hooke.hooke import Hooke, HookeRunner
>>> h = Hooke()
>>> r = HookeRunner()
>>> playlist = os.path.join('test', 'data', 'vclamp_jpk', 'playlist')
>>> h = r.run_lines(h, ['load_playlist ' + playlist]) # doctest: +ELLIPSIS
-<FilePlaylist playlist.hkp>
+<FilePlaylist JPK>
Success
<BLANKLINE>
>>> h = r.run_lines(h, ['curve_info']) # doctest: +ELLIPSIS, +REPORT_UDIFF
name: 2009.04.23-15.15.47.jpk
-path: test/data/vclamp_jpk/2009.04.23-15.15.47.jpk
-experiment: None
+path: .../test/data/vclamp_jpk/2009.04.23-15.15.47.jpk
driver: <hooke.driver.jpk.JPKDriver object at 0x...>
-filetype: None
-note:
+note: None
+command stack: []
blocks: 2
+block names: ['approach', 'retract']
block sizes: [(4096, 6), (4096, 4)]
Success
<BLANKLINE>
-Load the second curve, to test calibration file overriding.
+Ensure that we can at least load each of the example curves.
->>> h = r.run_lines(h, ['next_curve'])
-Success
-<BLANKLINE>
->>> h = r.run_lines(h, ['curve_info']) # doctest: +ELLIPSIS, +REPORT_UDIFF
-name: 2009.04.23-15.21.39.jpk
-path: test/data/vclamp_jpk/2009.04.23-15.21.39.jpk
-experiment: None
-driver: <hooke.driver.jpk.JPKDriver object at 0x...>
-filetype: None
-note:
-blocks: 3
-block sizes: [(4096, 6), (2048, 3), (4096, 4)]
-Success
-<BLANKLINE>
+>>> p = h.playlists.current()
+>>> for i,curve in enumerate(p.items()):
+... print (i,
+... curve.info['raw info']['file-format-version'],
+... [d.info['name'] for d in curve.data]) # doctest: +REPORT_UDIFF
+(0, '0.5', ['approach', 'retract'])
+(1, '0.5', ['approach', 'pause', 'retract'])
+(2, '0.2', ['pause-0', 'approach', 'pause-1', 'retract'])
+(3, '0.12', ['approach', 'pause-0', 'retract', 'pause-1'])
+(4, '0.2', ['pause-0', 'approach', 'pause-1', 'retract'])
+(5, '0.12', ['approach', 'pause-0', 'retract', 'pause-1'])
+
+Load each of the example segments in the :file:`Data1D` directory.
+
+>>> driver = [d for d in h.drivers if d.name == 'jpk'][0]
+>>> base_dir = os.path.join('test', 'data', 'vclamp_jpk', 'Data1D')
+>>> for file_name in sorted(os.listdir(base_dir)):
+... path = os.path.join(base_dir, file_name)
+... print path
+... print driver.is_me(path)
+... data = driver.read(path)
+... print data.shape, data[:5], data[-5:]
+... # doctest: +ELLIPSIS, +REPORT_UDIFF
+test/data/vclamp_jpk/Data1D/data1D-ConstantData1D-1282315524304.jpk-data1D
+True
+(128,) [ 9.99999997e-07 9.99999997e-07 9.99999997e-07 9.99999997e-07
+ 9.99999997e-07] [ 9.99999997e-07 9.99999997e-07 9.99999997e-07 9.99999997e-07
+ 9.99999997e-07]
+test/data/vclamp_jpk/Data1D/data1D-MemoryFloatData1D-1282315524326.jpk-data1D
+True
+(128,) [ 5.31691167e+36 5.31691167e+36 1.06338233e+37 1.59507347e+37
+ 2.12676467e+37] [ Inf Inf Inf Inf Inf]
+test/data/vclamp_jpk/Data1D/data1D-MemoryIntegerData1D-1282315524320.jpk-data1D
+True
+(128,) [ 0. 0. 0. 0. 0.] [ 0. 0. 0. 0. 0.]
+test/data/vclamp_jpk/Data1D/data1D-MemoryIntegerData1D-1282315524323.jpk-data1D
+True
+(128,) [ 0. 0. 0. 0. 0.] [ 0. 0. 0. 0. 0.]
+test/data/vclamp_jpk/Data1D/data1D-MemoryShortData1D-1282315524313.jpk-data1D
+True
+(128,) [ 0.000511 0.000511 0.001022 0.001533 0.002044] [-0.002683 -0.002172 -0.001661 -0.00115 -0.000639]
+test/data/vclamp_jpk/Data1D/data1D-MemoryShortData1D-1282315524316.jpk-data1D
+True
+(128,) [ 0. 0. 0. 0. 0.] [ 0. 0. 0. 0. 0.]
+test/data/vclamp_jpk/Data1D/data1D-RasterData1D-1282315524283.jpk-data1D
+True
+(128,) [ 0. 1. 2. 3. 4.] [ 123. 124. 125. 126. 127.]
+
+The data for the float and integer samples are not very convincing,
+but appear to be correct. I've emailed Michael Haggerty to confirm
+the expected contents.
"""
projects / hooke.git / blobdiff