sci-mathematics/rstudio: Bump to 0.99.902
authorMark Wright <gienah@gentoo.org>
Sun, 15 May 2016 10:52:51 +0000 (20:52 +1000)
committerMark Wright <gienah@gentoo.org>
Sun, 15 May 2016 10:52:51 +0000 (20:52 +1000)
Package-Manager: portage-2.2.28

sci-mathematics/rstudio/Manifest
sci-mathematics/rstudio/rstudio-0.99.902.ebuild [new file with mode: 0644]

index d7938979cd4f6cca77904804865747a0d39a878e..832ecc3bbdf2d5e92a7d5cc2b67bb7eac0558e13 100644 (file)
@@ -26,6 +26,7 @@ DIST rstudio-0.99.491.tar.gz 16992702 SHA256 e8c21e2262b610a7ccf39283b97d114bee3
 DIST rstudio-0.99.879.tar.gz 17406999 SHA256 73fa59be34eb63d9ed194642a93ad529d2c67cdcbcd2f291952fdef8e999a097 SHA512 c2bbe598a4a9c2abc69e39807af70be5729a06bbcb73bac5249f74f3c3daddb2909bf4a46d988f0d4bfeabe308f0c31d2a75aa28a52f11c1343dfcead07e2c45 WHIRLPOOL 5c9c75a7891ac53eb80a36eff518d77a0c281b16bff383526ac1ede07ee57486d7b00be4e400a0cad48dfea92729becf25c67f18782af7930f9b4218592afe5c
 DIST rstudio-0.99.893.tar.gz 17407634 SHA256 90a657b1fa16cfc575ca884789bac47f17832eb8b92496d044da3c5d79b0b874 SHA512 baa2a8c27e101e74b8a3f3b1cd290c90031881ae11fb44606b9af1efa4114c4c6fe68298f554d8b83f96418159477579414ddb99d49d2942c021aa0697947222 WHIRLPOOL a81ed5ee17a730e9674b2a98b95f87e70c532df95fda15402952901f7def24cc673db724841579e5dbf184a3e9fc16cfada93284b40014edf74863a61e0798a5
 DIST rstudio-0.99.896.tar.gz 17409121 SHA256 05fc7546ad1d21d7e6219538056ec2ee1b86d09b731a588198ce137d3fe25bae SHA512 c62df2a1c54f8c6d14b1239dd746b88693c11c48ec56aa5ae89023e98901793b0e65df44526cbc8c71036c0f73a512767cae086ed3777540b1ceda05e3398e17 WHIRLPOOL 7f4d0ebc8db509f09ccc15da02a4a426de431312f2dc65126bda76e11de0e106671fc7a83e9ea8e66b88f81268d0db8b44014a70744b30641bb58bedda73427d
+DIST rstudio-0.99.902.tar.gz 17408815 SHA256 703a3ebedbb4bb44d2cacffed2615b4f65156fcd4115029931eb5fd99950c689 SHA512 23db68f05900666287901d75f02006f7edacafab057d82a312b4e5aac639ef4b5db702420632f2768e509411bbfc73c32a533aa0f1b33379c10df82e009b974e WHIRLPOOL e7ef3cf0d9a414257c4c0c68809c674721f9513917bd450c9946133ee69dd735374417483c7dc380ee4d387119558c961d4ea815aac5bcd3fa22ee863556e0a4
 DIST selenium-java-2.37.0.zip 24625928 SHA256 0eebba65d8edb01c1f46e462907c58f5d6e1cb0ddf63660a9985c8432bdffbb7 SHA512 68624e82dbc751a25c50fad72702a98eb30d77fd4337d2a969f8e06bcc49e5f8c835cd27ec53772f3375014ddde1d5636936e966b75f3594a9f86aa18ba4e779 WHIRLPOOL eb6659aae26f3c78b6f998546b23d0636c9d00ed8a7f985db1463ac4bd483ccb3e643d84e2ca0f59e0636a8de79eb552ff1d68eb6f9c06907029f7552d8f7777
 DIST selenium-server-standalone-2.37.0.jar 34730734 SHA256 97bc8c699037fb6e99ba7af570fb60dbb1b7ce30cde2448287a44ef65b13023e SHA512 b215446d42d2d1f69664349b6ae6dc53a532d3624c91254f0f4183d0ad764648792e5cc1126a55a1e60d9687d55200fed01d6d2f46cc3d853b1fa6ee38111018 WHIRLPOOL 20640591534f31f24825a9ed139589b182e8b60d86541bf0be104d3cc0280983f6566bd0459f2253ac3875b48a2798b205bac8f815a119fff6db625ce9bbc29e
 DIST shinyapps-0.98.1000.tar.gz 910095 SHA256 b95c512ae0a0fb4335878d9cfcf9073e2cb3ccfed73543abe27ea8878ed36d57 SHA512 3162317c4c20cfc1497e952a8235867084d629ae88407e6c465b3e208adb1dc97abfe6b9922e0374ddf4c8e38a76e112942bd312c54a66f74e6f2a3fe4c0a07c WHIRLPOOL ecc2bce78387cb42e9989163d8fca29220e66f085acde3323417058aebb624dafa8c0e1873c7d79e67324cbd5aad250ef9fcdbbc8f659d64482233b95d898a15
diff --git a/sci-mathematics/rstudio/rstudio-0.99.902.ebuild b/sci-mathematics/rstudio/rstudio-0.99.902.ebuild
new file mode 100644 (file)
index 0000000..641eabf
--- /dev/null
@@ -0,0 +1,250 @@
+# Copyright 1999-2016 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Id$
+
+EAPI=5
+
+inherit eutils user cmake-utils gnome2-utils pam versionator fdo-mime java-pkg-2 pax-utils
+
+# TODO
+# * package gin and gwt
+# * use dict from tree, linguas
+# * do src_test (use junit from tree?)
+
+# update from scripts in dependencies/common
+# egrep '(GWT_SDK_VER=|GIN_VER=|SELENIUM_VER=|CHROMEDRIVER_VER=)' dependencies/common/install-gwt
+GWT_VER=2.7.0
+GIN_VER=1.5
+SELENIUM_VER=2.37.0
+CHROMEDRIVER_VER=2.7
+# grep 'PANDOC_VERSION=' dependencies/common/update-pandoc
+PANDOC_VER=1.13.1
+# ls dependencies/common/*.tar.gz
+PACKRAT_VER=0.98.1000
+RMARKDOWN_VER=0.98.1000
+SHINYAPPS_VER=0.98.1000
+RSCONNECT_VER=0.4.1.4_fcac892a69817febd7b655b189bf57193260cda0
+
+DESCRIPTION="IDE for the R language"
+HOMEPAGE="
+       http://www.rstudio.org
+       https://github.com/rstudio/rstudio/"
+SRC_URI="
+       https://github.com/rstudio/rstudio/archive/v${PV}.tar.gz -> ${P}.tar.gz
+       https://s3.amazonaws.com/rstudio-buildtools/gin-${GIN_VER}.zip
+       https://s3.amazonaws.com/rstudio-buildtools/gwt-${GWT_VER}.zip
+       https://s3.amazonaws.com/rstudio-buildtools/selenium-java-${SELENIUM_VER}.zip
+       https://s3.amazonaws.com/rstudio-buildtools/selenium-server-standalone-${SELENIUM_VER}.jar
+       https://s3.amazonaws.com/rstudio-buildtools/chromedriver-linux
+       https://s3.amazonaws.com/rstudio-dictionaries/core-dictionaries.zip
+       https://dev.gentoo.org/~gienah/distfiles/packrat-${PACKRAT_VER}.tar.gz
+       https://dev.gentoo.org/~gienah/distfiles/rmarkdown-${RMARKDOWN_VER}.tar.gz
+       https://dev.gentoo.org/~gienah/distfiles/shinyapps-${SHINYAPPS_VER}.tar.gz
+       https://dev.gentoo.org/~gienah/distfiles/rsconnect_${RSCONNECT_VER}.tar.gz
+"
+
+LICENSE="AGPL-3"
+SLOT="0"
+KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
+IUSE="dedicated server"
+
+QT_VER=5.4
+QT_SLOT=5
+RDEPEND="
+       app-text/pandoc
+       dev-haskell/pandoc-citeproc
+       >=dev-lang/R-2.11.1
+       >=dev-libs/boost-1.50:=
+       >=dev-libs/mathjax-2.3
+       dev-libs/openssl:0
+       sys-apps/util-linux
+       >=sys-devel/clang-3.5.0
+       sys-libs/zlib
+       >=virtual/jre-1.7:=
+       x11-libs/pango
+       !dedicated? (
+               >=dev-qt/qtcore-${QT_VER}:${QT_SLOT}
+               >=dev-qt/qtdeclarative-${QT_VER}:${QT_SLOT}
+               >=dev-qt/qtdbus-${QT_VER}:${QT_SLOT}
+               >=dev-qt/qtgui-${QT_VER}:${QT_SLOT}
+               >=dev-qt/qtnetwork-${QT_VER}:${QT_SLOT}
+               >=dev-qt/qtopengl-${QT_VER}:${QT_SLOT}
+               >=dev-qt/qtpositioning-${QT_VER}:${QT_SLOT}
+               >=dev-qt/qtprintsupport-${QT_VER}:${QT_SLOT}
+               >=dev-qt/qtsingleapplication-2.6.1_p20150629[qt5]
+               >=dev-qt/qtsensors-${QT_VER}:${QT_SLOT}
+               >=dev-qt/qtsql-${QT_VER}:${QT_SLOT}
+               >=dev-qt/qtsvg-${QT_VER}:${QT_SLOT}
+               >=dev-qt/qtwebkit-${QT_VER}:${QT_SLOT}
+               >=dev-qt/qtwidgets-${QT_VER}:${QT_SLOT}
+               >=dev-qt/qtxml-${QT_VER}:${QT_SLOT}
+               >=dev-qt/qtxmlpatterns-${QT_VER}:${QT_SLOT}
+               server? ( virtual/pam )
+       )
+       dedicated? ( virtual/pam )"
+DEPEND="${RDEPEND}
+       app-arch/unzip
+       dev-java/ant-core
+       >=virtual/jdk-1.7:=
+       virtual/pkgconfig"
+#      test? ( dev-java/junit:4 )
+
+PATCHES=(
+               "${FILESDIR}/${PN}-0.99.879-prefs.patch"
+               "${FILESDIR}/${PN}-0.99.879-paths.patch"
+               "${FILESDIR}/${PN}-0.99.879-clang-pandoc.patch"
+               "${FILESDIR}/${PN}-0.98.490-linker_flags.patch"
+               "${FILESDIR}/${PN}-0.98.1091-boost-1.57.patch"
+               "${FILESDIR}/${PN}-0.99.473-qtsingleapplication.patch"
+               "${FILESDIR}/${PN}-0.99.486-systemd.patch"
+)
+
+src_unpack() {
+       unpack ${P}.tar.gz gwt-${GWT_VER}.zip
+       cd "${S}" || die
+       mkdir -p src/gwt/lib/{gin,gwt} \
+               dependencies/common/dictionaries \
+               src/gwt/lib/selenium/${SELENIUM_VER} \
+               src/gwt/lib/selenium/chromedriver/${CHROMEDRIVER_VER} || die
+       mv ../gwt-${GWT_VER} src/gwt/lib/gwt/${GWT_VER} || die
+       unzip -qd src/gwt/lib/gin/${GIN_VER} \
+               "${DISTDIR}"/gin-${GIN_VER}.zip || die
+       unzip -qd dependencies/common/dictionaries \
+               "${DISTDIR}"/core-dictionaries.zip || die
+       unzip -qd src/gwt/lib/selenium/${SELENIUM_VER} \
+               "${DISTDIR}"/selenium-java-${SELENIUM_VER}.zip || die
+       cp "${DISTDIR}"/selenium-server-standalone-${SELENIUM_VER}.jar \
+               src/gwt/lib/selenium/${SELENIUM_VER}/ || die
+       cp "${DISTDIR}"/chromedriver-linux \
+               src/gwt/lib/selenium/chromedriver/${CHROMEDRIVER_VER}/ || die
+       cd dependencies/common || die
+       unpack packrat-${PACKRAT_VER}.tar.gz
+       unpack rmarkdown-${RMARKDOWN_VER}.tar.gz
+       unpack shinyapps-${SHINYAPPS_VER}.tar.gz
+       unpack rsconnect_${RSCONNECT_VER}.tar.gz
+       cp "${DISTDIR}"/rmarkdown-${RMARKDOWN_VER}.tar.gz \
+               . || die
+       cp "${DISTDIR}"/packrat-${PACKRAT_VER}.tar.gz \
+               . || die
+       cp "${DISTDIR}"/shinyapps-${SHINYAPPS_VER}.tar.gz \
+               . || die
+       cp "${DISTDIR}"/rsconnect_${RSCONNECT_VER}.tar.gz \
+               . || die
+}
+
+src_prepare() {
+       java-pkg-2_src_prepare
+
+       egit_clean
+
+       epatch "${PATCHES[@]}"
+
+       # Enable CMake to install our .service file for systemd usage
+       mkdir -vp "${S}/src/cpp/server/lib/systemd/system" || die
+       cp -v "${FILESDIR}/rstudio-server.service.in" "${S}/src/cpp/server/lib/systemd/system/" || die
+
+       # Adding -DDISTRO_SHARE=... to append-flags breaks cmake so using
+       # this sed hack for now. ~RMH
+       sed -i \
+               -e "s|DISTRO_SHARE|\"share/${PN}\"|g" \
+               src/cpp/server/ServerOptions.cpp \
+               src/cpp/session/SessionOptions.cpp || die
+
+       # use mathjax from system
+       ln -sf "${EPREFIX}"/usr/share/mathjax dependencies/common/mathjax-23 || die
+
+       # make sure icons and mime stuff are with prefix
+       sed -i \
+               -e "s:/usr:${EPREFIX}/usr:g" \
+               CMakeGlobals.txt src/cpp/desktop/CMakeLists.txt || die
+
+       # On Gentoo the rstudio-server configuration file is /etc/conf.d/rstudio-server.conf
+       sed -e "s@/etc/rstudio/rserver.conf@${EROOT}etc/conf.d/rstudio-server.conf@" \
+               -i src/cpp/server/ServerOptions.cpp \
+               || die
+
+       # Set the rsession.conf file location for Gentoo prefix
+       sed -e "s@/etc/rstudio/rsession.conf@${EROOT}etc/rstudio/rsession.conf@" \
+               -i src/cpp/session/SessionOptions.cpp \
+               || die
+
+       # dev-qt/qtsingleapplication-2.6.1_p20150629 does not provide a cmake module.
+       # It provides a library that has its version number appended to the end,
+       # which is difficult to handle in cmake, as find_library does not support
+       # searching for wildcard library names. So I find the library name from the
+       # qmake spec, and then sed this into the patched src/cpp/desktop/CMakeLists.txt.
+       rm -rf "${S}"/src/cpp/desktop/3rdparty || die
+       local s=$(grep '\-lQt$${QT_MAJOR_VERSION}Solutions_SingleApplication' \
+                                  "${EROOT}"/usr/lib64/qt5/mkspecs/features/qtsingleapplication.prf \
+                                        | sed -e 's@\$\${QT_MAJOR_VERSION}@5@' \
+                                                  -e 's@LIBS \*= -l@@')
+       sed -e "s@Qt5Solutions_SingleApplication-2.6@${s}@g" \
+               -i "${S}"/src/cpp/desktop/CMakeLists.txt \
+               || die
+
+       # The git commit for tag v0.99.902
+       sed -e 's@git ARGS rev-parse HEAD@echo ARGS 4daf125408b86eeba48a39f62df34eb81d934639@'\
+               -i "${S}"/CMakeLists.txt \
+               "${S}"/CMakeGlobals.txt \
+               || die
+}
+
+src_configure() {
+       export RSTUDIO_VERSION_MAJOR=$(get_version_component_range 1)
+       export RSTUDIO_VERSION_MINOR=$(get_version_component_range 2)
+       export RSTUDIO_VERSION_PATCH=$(get_version_component_range 3)
+
+       local mycmakeargs=(
+               -DDISTRO_SHARE=share/${PN}
+               $(cmake-utils_use !dedicated RSTUDIO_INSTALL_FREEDESKTOP)
+               -DRSTUDIO_TARGET=$(usex dedicated "Server" "$(usex server "Development" "Desktop")")
+               -DQT_QMAKE_EXECUTABLE="${EROOT}"usr/lib64/qt5/bin/qmake
+               -DRSTUDIO_VERIFY_R_VERSION=FALSE
+               )
+
+       cmake-utils_src_configure
+}
+
+src_compile() {
+       # Avoid the rest of the oracle-jdk-bin-1.8.0.60 sandbox violations F: mkdir S: deny
+       # P: /root/.oracle_jre_usage.
+       export ANT_OPTS="-Duser.home=${T}"
+       cmake-utils_src_compile
+}
+
+src_install() {
+       export ANT_OPTS="-Duser.home=${T}"
+       cmake-utils_src_install
+       pax-mark m "${ED}usr/bin/rstudio"
+       doconfd "${FILESDIR}"/rstudio-server.conf
+       dodir /etc/rstudio
+       insinto /etc/rstudio
+       doins "${FILESDIR}"/rsession.conf
+       dosym /etc/conf.d/rstudio-server.conf /etc/rstudio/rserver.conf
+       if use dedicated || use server; then
+               dopamd src/cpp/server/extras/pam/rstudio
+               newinitd "${FILESDIR}"/rstudio-server.initd rstudio-server
+       fi
+}
+
+pkg_preinst() {
+       use dedicated || gnome2_icon_savelist
+       java-pkg-2_pkg_preinst
+}
+
+pkg_postinst() {
+       use dedicated || { fdo-mime_desktop_database_update
+               fdo-mime_mime_database_update
+               gnome2_icon_cache_update ;}
+
+       if use dedicated || use server; then
+               enewgroup rstudio-server
+               enewuser rstudio-server -1 -1 -1 rstudio-server
+       fi
+}
+
+pkg_postrm() {
+       use dedicated || { fdo-mime_desktop_database_update
+               fdo-mime_mime_database_update
+               gnome2_icon_cache_update ;}
+}