--- /dev/null
+@string{IJBMM = "International Journal of Biological Macromolecules"}
+
+@string{WKing = "King, W.~Trevor"}
+@string{MSu = "Su, Meihong"}
+@string{GYang = "Yang, Guoliang"}
+
+@article { king10,
+ author = WKing #" and "# MSu #" and "# GYang,
+ title = "{M}onte {C}arlo simulation of mechanical unfolding of proteins
+ based on a simple two-state model",
+ year = 2010,
+ month = mar,
+ day = 1,
+ address = "Department of Physics, Drexel University, 3141
+ Chestnut Street, Philadelphia, PA 19104, USA.",
+ journal = IJBMM,
+ volume = 46,
+ number = 2,
+ pages = "159--166",
+ issn = "0141-8130",
+ alternative_issn = "1879-0003",
+ doi = "10.1016/j.ijbiomac.2009.12.001",
+ url = "http://www.sciencedirect.com/science/article/B6T7J-
+ 4XWMND2-1/2/7ef768562b4157fc201d450553e5de5e",
+ language = "eng",
+ keywords = "Atomic force microscopy;Mechanical unfolding;Monte Carlo
+ simulation;Worm-like chain;Single molecule methods",
+ abstract = "Single molecule methods are becoming routine biophysical
+ techniques for studying biological macromolecules. In mechanical
+ unfolding of proteins, an externally applied force is used to induce
+ the unfolding of individual protein molecules. Such experiments have
+ revealed novel information that has significantly enhanced our
+ understanding of the function and folding mechanisms of several types
+ of proteins. To obtain information on the unfolding kinetics and the
+ free energy landscape of the protein molecule from mechanical unfolding
+ data, a Monte Carlo simulation based on a simple two-state kinetic
+ model is often used. In this paper, we provide a detailed description
+ of the procedure to perform such simulations and discuss the
+ approximations and assumptions involved. We show that the appearance of
+ the force versus extension curves from mechanical unfolding of proteins
+ is affected by a variety of experimental parameters, such as the length
+ of the protein polymer and the force constant of the cantilever. We
+ also analyze the errors associated with different methods of data
+ pooling and present a quantitative measure of how well the simulation
+ results fit experimental data. These findings will be helpful in
+ experimental design, artifact identification, and data analysis for
+ single molecule studies of various proteins using the mechanical
+ unfolding method."
+}
+
+% Talks
+
+@unpublished{ 2013-01-columbia,
+ title= {Collaborative version control with {G}it},
+ author = WKing,
+ year = 2013,
+ month = jan,
+ note= {Software Carpentry boot camp, Columbia University},
+ address = {Columbia University},
+}
+
+@unpublished{ 2009-10-life-cycles,
+ title= {Software life-cycles and alphabet soup},
+ author = WKing,
+ year = 2009,
+ month = oct,
+ note= {Drexel Physics Graduate Student Association},
+ address = {Drexel University}
+}
+
+@unpublished{ 2008-06-locks,
+ title= {Manipulating combination locks & Ray tracing with polarization},
+ author = WKing,
+ year = 2008,
+ month = jun,
+ note= {Drexel Physics Graduate Student Association},
+ address = {Drexel University}
+}
+
+@unpublished{ 2006-05-quantum-computing,
+ title= {Quantum Computing},
+ author = WKing,
+ year = 2006,
+ note= {Rochester Solid State final},
+ address = {University of Rochester}
+}
+% month = may,
+
+% Posters
+
+@unpublished{ 2013-04-swc,
+ title= {Teaching Software Carpentry: Better Science through Science},
+ author = WKing,
+ year = 2013,
+ month = apr,
+ note= {Drexel CoAS Research Day},
+ address = {Philadelphia, Pennsylvania},
+}
+
+@unpublished{ 2012-04-calibcant,
+ title= {Thermally calibrating {AFM} cantilever spring constants},
+ author = WKing,
+ year = 2012,
+ month = apr,
+ note= {Drexel CoAS Research Day},
+ address = {Philadelphia, Pennsylvania},
+}
+
+@unpublished{ 2011-04-saswsim,
+ title= {Flexible parallel simulations and packaging},
+ author = WKing,
+ year = 2011,
+ month = apr,
+ note= {Drexel CoAS Research Day},
+ address = {Philadelphia, Pennsylvania},
+}
+
+@unpublished{ 2010-04-open-source,
+ title= {Open source software in experimental protein unfolding},
+ author = WKing,
+ year = 2010,
+ month = apr,
+ note= {Drexel CoAS Research Day},
+ address = {Philadelphia, Pennsylvania},
+}
+
+@unpublished{ 2009-03-roughness,
+ title= {Experimental Estimation of the Free Energy Landscape
+ Roughness of Protein Molecules},
+ author = WKing,
+ year = 2009,
+ month = mar,
+ note= {Biophysical Society Annual Meeting},
+ address = {Philadelphia, Pennsylvania},
+}
+
+@unpublished{ 2008-04-sawsim,
+ title= {Simulated mechanical unfolding of single proteins},
+ author = WKing,
+ year = 2008,
+ month = apr,
+ note= {Drexel CoAS Research Day},
+ address = {Philadelphia, Pennsylvania},
+}
+
+@unpublished{ 2008-02-stiffness,
+ title= {Effects of Cantilever Stiffness on Unfolding Force in AFM
+ Protein Unfolding},
+ author = WKing,
+ year = 2008,
+ month = feb,
+ note= {Biophysical Society Annual Meeting},
+ address = {Long Beach, California},
+}
-\documentclass[12pt,a4paper]{article}\r
-\r
-\usepackage[german]{babel}\r
-\usepackage{currvita}\r
+\documentclass[12pt]{article}\r
+\r
+\topmargin 0.0in\r
+\headheight 0.0in\r
+\headsep 0.0in\r
+\textheight 9in\r
+\oddsidemargin 0in\r
+\textwidth 6in\r
+\pagestyle{empty} % no room for page numbers\r
+\r
+\usepackage{bibunits}\r
+\usepackage[ManyBibs,LabelsAligned]{currvita}\r
+\usepackage{hyperref}\r
+\hypersetup{colorlinks}\r
+\hypersetup{linkcolor=black}\r
+\hypersetup{anchorcolor=black}\r
+\hypersetup{citecolor=black}\r
+\hypersetup{filecolor=black}\r
+\hypersetup{menucolor=black}\r
+\hypersetup{runcolor=black}\r
+\hypersetup{urlcolor=black}\r
+\r
+\defaultbibliography{cv}\r
+\defaultbibliographystyle{plain}\r
\r
\newcommand*{\ac}[1]{\mbox{#1}}\r
\r
\r
\begin{document}\r
\r
-\begin{cv}{Lebenslauf}\r
+\begin{cv}{R\'esum\'e}\r
\r
- \begin{cvlist}{Pers"onliche Daten}\r
- \item Axel Reichert\\\r
- Beethovenstr.~25\\\r
- 40233~D"usseldorf\r
- \item Tel.:~(02\,11)~6\,91\,24\,15\\\r
- E"~Mail:~axel.reichert@gmx.de\r
- \item Geb.~am~03.\,08.~1970 in~D"usseldorf\\\r
- Ledig, deutsch\r
+ \begin{cvlist}{Contact}\r
+ \item W. Trevor King\\\r
+ 120 Miller St.\\\r
+ Highlands, NJ, 07732\r
+ \item Tel.:~(215)~284~6634\\\r
+ Email:~wking@tremily.us\r
\end{cvlist}\r
\r
- \begin{cvlist}{Schulbildung}\r
- \item[08/1976--05/1989] Grundschule und Gymnasium in Mettmann\r
- (Leistungskurse Mathematik und Physik)\r
- \end{cvlist}\r
+ \begin{cvlist}{Education}\r
+ \item[09/2000--05/2004] Colgate University, Hamilton, NY\r
+ (B.A.~in Physics and Math)\r
\r
- \begin{cvlist}{Wehrdienst}\r
- \item[10/1989--09/1990] Fernmeldeaufkl"arer in Clausthal-Zellerfeld\r
- und Rotenburg/""W"umme\r
- \end{cvlist}\r
+ \item[09/2004--05/2006] University of Rochester, Rochester, NY\r
+ (M.A.~in Physics)\r
\r
- \begin{cvlist}{Studium}\r
- \item[10/1990--09/1992] Maschinenbauvordiplom an der Universit"at\r
- Hannover\r
- \item[10/1992--06/1993] Wissenschaftliche Hilfskraft am Institut\r
- f"ur Umformtechnik und Umformmaschinen, Hannover; Mitarbeit an\r
- DFG-Projekt: Implementation eines Stoffgesetzes in das\r
- \ac{FEM}-Programm \ac{ABAQUS}\r
- \item[10/1992--08/1996] Maschinenbaudiplom an der Universit"at\r
- Hannover, Ent"-wicklungs"~~und Konstruktionstechnik (Schwerpunkte\r
- Finite Elemente, Schwingungstechnik und Elasto"~/""Plastomechanik)\r
- \item[10/1994--04/1996] Mathematikvordiplom an der Universit"at\r
- Hannover\r
+ \item[09/2006--05/2013] Drexel University, Philadelphia, PA\r
+ (Ph.D.~track in Physics)\r
\end{cvlist}\r
\r
- \begin{cvlist}{Praktikum}\r
- \item[08/1994--09/1994] Br"uninghaus~\&~Drissner~GmbH, Hilden\r
- (mittelst"andisches Pre"s"~, Stanz"~ und Ziehwerk); Konstruktion\r
- eines kombinierten Roll"~ und Zudr"uckwerkzeuges f"ur\r
- Klemmschellen\r
+ \begin{cvlist}{Publications}\r
+% \begin{bibunit}[alpha]\r
+% \nocite{wking10}\r
+% \item[Books] \putbib\r
+% \end{bibunit}\r
+ \item [Papers]\r
+ \begin{bibunit}\r
+ \nocite{\r
+ king10}\r
+ \putbib\r
+ \end{bibunit}\r
+ \item [Talks]\r
+ \begin{bibunit}\r
+ \nocite{\r
+ 2013-01-columbia,\r
+ 2009-10-life-cycles}\r
+ %2008-06-locks\r
+ \putbib\r
+ \end{bibunit}\r
+ \item [Posters]\r
+ \begin{bibunit}\r
+ \nocite{\r
+ 2013-04-swc,\r
+ 2011-04-saswsim,\r
+ 2010-04-open-source}\r
+ %2012-04-calibcant,\r
+ %2009-03-roughness,\r
+ %2008-04-sawsim,\r
+ %2008-02-stiffness\r
+ \putbib\r
+ \end{bibunit}\r
\end{cvlist}\r
\r
- \begin{cvlist}{Berufserfahrung}\r
- \item[seit~08/1996] Max-Planck-Institut f"ur Eisenforschung~GmbH,\r
- D"usseldorf; wissenschaftlicher Mitarbeiter der Abteilung\r
- Metallurgie\r
-\r
- Promotion "uber "`Soft Reduction beim Stranggie"sen und ihr\r
- Einflu"s auf die Produktqualit"at"' im Rahmen eines Projektes der\r
- Europ"aischen Gemeinschaft f"ur Kohle und Stahl in Zusammenarbeit\r
- mit British Steel, den Dillinger H"uttenwerken und der\r
- TU~Clausthal\r
+ \begin{cvlist}{Teaching assistant-ships}\r
+ \item[09/2004--05/2005] General Physics I\r
+ (Mechanics)\r
+ \item[Fall 2006] PHYS 152: Introductory Physics I\r
+ (Mechanics)\r
+ \item[Winter 2007] PHYS 101: Fundamentals of Physics I\r
+ (Mechanics)\r
+ \item[Spring 2007] PHYS 102: Fundamentals of Physics II\r
+ (Electricity and magnetism)\r
+ \item[Spring 2008] PHYS 102: Fundamentals of Physics II\r
+ (Electricity and magnetism)\r
+ \item[Fall 2008] PHYS 154: Introductory Physics III\r
+ (Electricity, magnetism, and quantum mechanics)\r
+ \item[Winter 2009] PHYS 201: Fundamentals of Physics III\r
+ (Modern physics)\r
+ \item[Summer 2009] PHYS 102: Fundamentals of Physics II\r
+ (Electricity and magnetism)\r
+ \item[Fall 2010] PHYS 405: Advanced Computational\r
+ Physics---Parallel Computing\r
+ (MPI and CUDA)\r
+ \item[Winter 2011] PHYS 101: Fundamentals of Physics I\r
+ (Mechanics)\r
+ \item[Spring 2011] PHYS 102: Fundamentals of Physics II\r
+ (Electricity and magnetism)\r
+ \item[Fall 2011] PHYS 106: Introduction to Scientific Computing\r
+ (Algorithms in Maple)\r
+ \item[Winter 2012] PHYS 305: Computational Physics II\r
+ (Algorithms in C and C++)\r
+ \item[Spring 2012] PHYS 102: Fundamentals of Physics II\r
+ (Electricity and magnetism)\r
+ \item[Fall 2012] PHYS 405: Advanced Computational\r
+ Physics---Parallel Computing\r
+ (MPI and CUDA)\r
+ \item[Winter 2013] PHYS 305: Computational Physics II\r
+ (Algorithms in C and C++)\r
+ \item[Spring 2013] PHYS 102: Fundamentals of Physics II\r
+ (Electricity and magnetism)\r
\end{cvlist}\r
\r
- \begin{cvlist}{Fremdsprachen}\r
- \item Englisch, Franz"osisch\r
+ \begin{cvlist}{Research}\r
+ \item[05/2002--09/2002] Vortex pinning in superconducting thin films.\r
+ Wrote experimental control software in LabVIEW and fabricated\r
+ samples using Nb sputtering, photolithography, and wet etching.\r
+ \item[05/2003--09/2003] Navier--Stokes simulator.\r
+ Ported a program simulating two dimensional incompressible\r
+ fluid flow from MatLab to C.\r
+ \item[09/2003--05/2004] Surface tension and lipid phase separation.\r
+ Designed and began construction of an automated system for making\r
+ rod pull equilibrium surface pressure measurements on phospholipid\r
+ vesicle suspensions. Completed drive chain hardware and LabVIEW\r
+ software for sequentially moving samples to the rod pull mechanism\r
+ for measurement.\r
+ \item[05/2005--05/2006] Superconducting phase qubit quantum computing.\r
+ Wrote experiment control software in LabVIEW and data analysis\r
+ software in MatLab. Managed the $^3$He dilution refrigerator and\r
+ assembled custom circuit boards.\r
+ \item[09/2006--07/2013] Single molecule force spectroscopy via AFM.\r
+ Designed calibration, experiment control, data processing, and\r
+ Monte Carlo simulation software in Python and C. Performed\r
+ neccessary hardware troubleshooting and maintenance.\r
\end{cvlist}\r
\r
- \begin{cvlist}{\ac{EDV}}\r
- \item[Betriebssysteme] \ac{UNIX} (Linux, \ac{IRIX}), Windows, Novell\r
- Netware, \ac{DOS}\r
- \item[Sprachen] Perl, Shell-Skripte, \ac{HTML}, Fortran~77, Pascal,\r
- \ac{BASIC}\r
- \item[Anwendungen] \ac{ANSYS}, \ac{MARC}, Word, Excel, Corel"-DRAW,\r
- Designer, LaTeX, XEmacs\r
+ \begin{cvlist}{System administration}\r
+ \item[09/2009--09/2011] Drexel physics department webmaster.\r
+ Maintained and streamlined department website and assisted with\r
+ Apache-to-SiteCore migration.\r
+ \item[09/2005--Present] Home newtork system adminstrator.\r
+ I run Linux systems (primarily Gentoo) at home. I use my home\r
+ network to test installation, deployment, and maintenance of the\r
+ software infrastructure I'd like to see at work, which has lead to\r
+ experience with many packages (highlights below). Since 2008 I've\r
+ been publishing my notes on these systems in my blog at\r
+ \url{http://blog.tremily.us/}.\r
\end{cvlist}\r
\r
- \begin{cvlist}{Interessen}\r
- \item Klassische Musik, Typographie, Tischtennis, Fotografie\r
+ \begin{cvlist}{Software}\r
+ \item[Operating systems]\r
+ \href{http://www.gentoo.org/}{Linux (Gentoo)}\r
+ \item[Languages]\r
+ \href{http://python.org/}{Python},\r
+ \href{http://en.wikipedia.org/wiki/C_\%28programming_language\%29}{C},\r
+ \href{http://tiswww.case.edu/php/chet/bash/bashtop.html}{Bash},\r
+ \href{http://www.w3.org/html/wg/drafts/html/master/}{\ac{HTML}},\r
+ \href{http://www.w3.org/XML/}{\ac{XML}},\r
+ \href{http://www.w3.org/Style/CSS/Overview.en.html}{\ac{CSS}},\r
+ \href{http://www.sqlite.org/}{\ac{SQLite}},\r
+ \href{https://www.djangoproject.com/}{Django},\r
+ \href{http://en.wikipedia.org/wiki/JavaScript}{JavaScript},\r
+ \href{http://www.ni.com/labview/}{\ac{LabVIEW}},\r
+ \href{http://us.php.net/}{\ac{PHP}}\r
+ \item[Creator]\r
+ \href{https://pypi.python.org/pypi/pygrader}{pygrader},\r
+ \href{https://pypi.python.org/pypi/pyassuan}{pyassuan},\r
+ \href{https://pypi.python.org/pypi/pgp-mime}{pgp-mime},\r
+ \href{https://pypi.python.org/pypi/quizzer}{quizzer},\r
+ \href{http://blog.tremily.us/posts/sawsim/}{sawsim},\r
+ \href{https://pypi.python.org/pypi/pycomedi}{pycomedi},\r
+ \href{https://pypi.python.org/pypi/pypiezo}{pypiezo},\r
+ \href{https://pypi.python.org/pypi/stepper}{stepper},\r
+ \href{https://pypi.python.org/pypi/pypid}{pypid},\r
+ \href{https://pypi.python.org/pypi/pyafm}{pyafm},\r
+ \href{https://pypi.python.org/pypi/calibcant}{calibcant},\r
+ \href{https://pypi.python.org/pypi/stepper}{unfold-protein},\r
+ \href{https://pypi.python.org/pypi/chemdb}{chemdb},\r
+ \href{https://pypi.python.org/pypi/igor}{igor},\r
+ \href{https://pypi.python.org/pypi/h5config}{h5config},\r
+ \href{https://pypi.python.org/pypi/FFT-tools}{FFT-tools},\r
+ \href{https://pypi.python.org/pypi/update-copyright}{update-copyright},\r
+ \href{https://pypi.python.org/pypi/mutt-ldap}{mutt-ldap},\r
+ \href{http://blog.tremily.us/posts/Course_website/}{course-website},\r
+ \href{http://blog.tremily.us/posts/problempack/}{problempack},\r
+ \href{http://git.tremily.us/?p=assignment-template.git}{assignment-template},\r
+ \href{http://blog.tremily.us/posts/Gentoo_overlay/}{wtk-overlay},\r
+ \href{https://github.com/wking/dotfiles-framework}{dotfiles-framework}\r
+ \item[Maintainer] \r
+ \href{http://github.com/wking/rss2email/}{rss2email},\r
+ \href{http://bugseverywhere.org/}{Bugs Everywhere},\r
+ \href{http://blog.tremily.us/posts/drexel-thesis/}{drexel-thesis},\r
+ \href{https://pypi.python.org/pypi/Hooke/}{Hooke}\r
+ \item[Contributor]\r
+ \href{http://software-carpentry.org/}{Software Carpentry},\r
+ \href{http://git-scm.com/}{Git},\r
+ \href{http://docs.getpelican.com/}{Pelican},\r
+ \href{http://www.gentoo.org/proj/en/releng/catalyst/}{Gentoo catalyst},\r
+ \href{https://github.com/agrover/python-kmod}{python-kmod},\r
+ \href{http://www.comedi.org/}{Comedilib},\r
+ \href{http://web.mit.edu/kerberos/}{Kerberos},\r
+ \href{http://www.kernel.org/}{Linux kernel},\r
+ \href{http://www.cython.org/}{Cython},\r
+ \href{http://ikiwiki.info/}{ikiwiki},\r
+ \href{http://www.gnuplot.info/}{gnuplot},\r
+ \href{https://github.com/wking}{and}\r
+ \href{http://www.ohloh.net/accounts/wking}{more}\r
+ \href{http://blog.tremily.us/posts/Bugs/}{\ldots}\r
+ \item[User]\r
+ \href{http://www.gnu.org/software/emacs/}{Emacs},\r
+ \href{http://www.latex-project.org/}{\LaTeX},\r
+ \href{http://nginx.org/}{Nginx},\r
+ \href{http://www.openldap.org/}{OpenLDAP},\r
+ \href{https://www.isc.org/software/bind}{\ac{BIND}},\r
+ \href{http://www.cups.org/}{\ac{CUPS}},\r
+ \href{http://en.wikipedia.org/wiki/Network_File_System#NFSv4}{kerberized\r
+ \ac{NFSv4}},\r
+ \href{http://mlmmj.org/}{mlmmj}\r
\end{cvlist}\r
\r
- \begin{cvlist}{Sonstiges}\r
- \item[04/1992--10/1995] Ehrenamtliche Mitarbeit als Rechnerwart bei\r
- der Saalgemeinschaft~"`Exzenter"' (unter studentischer\r
- Selbstverwaltung stehender Arbeits"~~und Zeichensaal f"ur\r
- Ingenieurstudenten)\r
- \item[seit 01/1997] Aktives Mitglied der Deutschen\r
- Anwendervereinigung TeX, Vortr"age und Tutorien auf Konferenzen\r
- \end{cvlist}\r
-\r
-% \changes{v0.9d}{1999-08-25}{%\r
-% \LaTeX{} version of the umlaut is used instead of\r
-% \package{babel}'s~shortcut.%\r
-% }\r
- \cvplace{D\"usseldorf}\r
- \date{13.~September~1999}\r
-\r
+ \cvplace{Highlands, NJ}\r
+ \date{\today}\r
\end{cv}\r
\r
\end{document}\r
projects / cv-latex.git / commitdiff