-\section{Cantilever Spring Constant Calibration}
+\section{Cantilever spring constant calibration}
\label{sec:cantilever-calib:intro}
In order to measure forces accurately with an AFM, it is important to
-\chapter{Mechanical Protein Unfolding via AFM}
+\chapter{Mechanical protein unfolding via AFM}
\label{sec:methods}
In this chapter we will review the basic methods and procedures for
-\section{Sample Preparation}
+\section{Sample preparation}
\label{sec:sample-preparation}
In mechanical unfolding experiments, one end of the protein is bound
-\chapter{Cantilever Calibration}
+\chapter{Cantilever calibration}
\label{sec:cantilever-calib}
\input{cantilever-calib/contour_integration}
(\cref{sec:unfolding}). The last section in this chapter gives a
roadmap for the rest of the thesis (\cref{sec:outline}).
-\section{The Protein Folding Problem}
+\section{The protein folding problem}
\label{sec:folding-problem}
% Why study protein folding?
\end{figure}
-\section{Protein Folding Energy Landscapes}
+\section{Protein folding energy landscapes}
\label{sec:energy-landscape}
% the free energy landscape
distinctions in the near future.
-\section{Single Molecule Protein Folding Studies}
+\section{Single molecule protein folding studies}
\label{sec:single-molecule}
The large size of proteins relative to simpler molecules limits the
behavior.
-\section{Thesis Outline}
+\section{Thesis outline}
\label{sec:outline}
\Cref{sec:methods} of this thesis outlines the apparatus and methods
-\section{Results and Discussion}
+\section{Results and discussion}
\label{sec:sawsim:results}
\subsection{Force curves generated by simulation}