-#!/usr/bin/env python
-
-'''
-Hooke - A force spectroscopy review & analysis tool.
-
-A free, open source data analysis platform
-
-COPYRIGHT
-'''
+# Copyright (C) 2008-2010 Fabrizio Benedetti
+# Massimo Sandal <devicerandom@gmail.com>
+# Rolf Schmidt <rschmidt@alcor.concordia.ca>
+# W. Trevor King <wking@drexel.edu>
+#
+# This file is part of Hooke.
+#
+# Hooke is free software: you can redistribute it and/or
+# modify it under the terms of the GNU Lesser General Public
+# License as published by the Free Software Foundation, either
+# version 3 of the License, or (at your option) any later version.
+#
+# Hooke is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY; without even the implied warranty of
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+# GNU Lesser General Public License for more details.
+#
+# You should have received a copy of the GNU Lesser General Public
+# License along with Hooke. If not, see
+# <http://www.gnu.org/licenses/>.
+
+"""Hooke - A force spectroscopy review & analysis tool.
+"""
+
+if False: # Queue pickle error debugging code
+ """The Hooke class is passed back from the CommandEngine process
+ to the main process via a :class:`multiprocessing.queues.Queue`,
+ which uses :mod:`pickle` for serialization. There are a number of
+ objects that are unpicklable, and the error messages are not
+ always helpful. This block of code hooks you into the Queue's
+ _feed method so you can print out useful tidbits to help find the
+ particular object that is gumming up the pickle works.
+ """
+ import multiprocessing.queues
+ import sys
+ feed = multiprocessing.queues.Queue._feed
+ def new_feed (buffer, notempty, send, writelock, close):
+ def s(obj):
+ print 'SEND:', obj, dir(obj)
+ for a in dir(obj):
+ attr = getattr(obj, a)
+ #print ' ', a, attr, type(attr)
+ if obj.__class__.__name__ == 'Hooke':
+ # Set suspect attributes to None until you resolve the
+ # PicklingError. Then fix whatever is breaking the
+ # pickling.
+ #obj.commands = None
+ #obj.drivers = None
+ #obj.plugins = None
+ #obj.ui = None
+ pass
+ sys.stdout.flush()
+ send(obj)
+ feed(buffer, notempty, s, writelock, close)
+ multiprocessing.queues.Queue._feed = staticmethod(new_feed)
import multiprocessing
+import optparse
+import os.path
import unittest
+import sys
from . import engine as engine
from . import config as config_mod
def close(self):
self.config.write() # Does not preserve original comments
- def run(self):
+class HookeRunner (object):
+ def run(self, hooke):
"""Run Hooke's main execution loop.
Spawns a :class:`hooke.engine.CommandEngine` subprocess and
then runs the UI, rejoining the `CommandEngine` process after
the UI exits.
"""
+ ui_to_command,command_to_ui,command = self._setup_run(hooke)
+ try:
+ hooke.ui.run(hooke.commands, ui_to_command, command_to_ui)
+ finally:
+ hooke = self._cleanup_run(ui_to_command, command_to_ui, command)
+ return hooke
+
+ def run_lines(self, hooke, lines):
+ """Run the pre-set commands `lines` with the "command line" UI.
+
+ Allows for non-interactive sessions that are otherwise
+ equivalent to :meth:'.run'.
+ """
+ cmdline = ui.load_ui(hooke.config, 'command line')
+ ui_to_command,command_to_ui,command = self._setup_run(hooke)
+ try:
+ cmdline.run_lines(
+ hooke.commands, ui_to_command, command_to_ui, lines)
+ finally:
+ hooke = self._cleanup_run(ui_to_command, command_to_ui, command)
+ return hooke
+
+ def _setup_run(self, hooke):
ui_to_command = multiprocessing.Queue()
command_to_ui = multiprocessing.Queue()
- command = multiprocessing.Process(
- target=self.command.run, args=(self, ui_to_command, command_to_ui))
+ manager = multiprocessing.Manager()
+ command = multiprocessing.Process(name='command engine',
+ target=hooke.command.run, args=(hooke, ui_to_command, command_to_ui))
command.start()
+ return (ui_to_command, command_to_ui, command)
+
+ def _cleanup_run(self, ui_to_command, command_to_ui, command):
+ ui_to_command.put(ui.CloseEngine())
+ hooke = command_to_ui.get()
+ assert isinstance(hooke, Hooke)
+ command.join()
+ return hooke
+
+
+def main():
+ p = optparse.OptionParser()
+ p.add_option(
+ '-s', '--script', dest='script', metavar='FILE',
+ help='Script of command line Hooke commands to run.')
+ p.add_option(
+ '-c', '--command', dest='commands', metavar='COMMAND',
+ action='append', default=[],
+ help='Add a command line Hooke command to run.')
+ options,arguments = p.parse_args()
+ if len(arguments) > 0:
+ print >> sys.stderr, 'More than 0 arguments to %s: %s' \
+ % (sys.argv[0], arguments)
+ p.print_help(sys.stderr)
+ sys.exit(1)
+
+ hooke = Hooke(debug=__debug__)
+ runner = HookeRunner()
+
+ if options.script != None:
+ f = open(os.path.expanduser(options.script), 'r')
+ options.commands.extend(f.readlines())
+ f.close
+ if len(options.commands) > 0:
try:
- self.ui.run(self.commands, ui_to_command, command_to_ui)
+ hooke = runner.run_lines(hooke, options.commands)
finally:
- ui_to_command.put(ui.CloseEngine())
- command.join()
+ hooke.close()
+ sys.exit(0)
-def main():
- app = Hooke(debug=__debug__)
try:
- app.run()
+ hooke = runner.run(hooke)
finally:
- app.close()
-
-if __name__ == '__main__':
- main()
+ hooke.close()
projects / hooke.git / blobdiff