-#!/usr/bin/env python
-# -*- coding: utf-8 -*-
-
-'''
-config.py
-
-Configuration defaults, read/write, and template file creation for Hooke.
-
-COPYRIGHT
-'''
+# Copyright (C) 2010 W. Trevor King <wking@drexel.edu>
+#
+# This file is part of Hooke.
+#
+# Hooke is free software: you can redistribute it and/or
+# modify it under the terms of the GNU Lesser General Public
+# License as published by the Free Software Foundation, either
+# version 3 of the License, or (at your option) any later version.
+#
+# Hooke is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY; without even the implied warranty of
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+# GNU Lesser General Public License for more details.
+#
+# You should have received a copy of the GNU Lesser General Public
+# License along with Hooke. If not, see
+# <http://www.gnu.org/licenses/>.
+
+"""Configuration defaults, read/write, and template file creation for
+Hooke.
+"""
import ConfigParser as configparser
import os.path
def __init__(self, section, option=None, value=None, help=None, wrap=True):
self.section = section
self.option = option
- self.value = value
+ self.value = str(value)
self.help = help
self.wrap = wrap
if self.wrap == True:
if wrapper == None:
wrapper = textwrap.TextWrapper(
- initial_indent="# ",
- subsequent_indent="# ")
+ initial_indent='# ',
+ subsequent_indent='# ')
text = wrapper.fill(text)
+ else:
+ text = '# ' + '\n# '.join(text.splitlines())
fp.write(text.rstrip()+'\n')
if self.is_section():
fp.write("[%s]\n" % self.section)
str(value).replace('\n', '\n\t')))
DEFAULT_SETTINGS = [
- Setting('display', help='Control display appearance: colour, ???, etc.'),
- Setting('display', 'colour_ext', 'None', help=None),
- Setting('display', 'colour_ret', 'None', help=None),
- Setting('display', 'ext', '1', help=None),
- Setting('display', 'ret', '1', help=None),
-
- Setting('display', 'correct', '1', help=None),
- Setting('display', 'colout_correct', 'None', help=None),
- Setting('display', 'contact_point', '0', help=None),
- Setting('display', 'medfilt', '0', help=None),
-
- Setting('display', 'xaxes', '0', help=None),
- Setting('display', 'yaxes', '0', help=None),
- Setting('display', 'flatten', '1', help=None),
-
- Setting('conditions', 'temperature', '301', help=None),
-
- Setting('fitting', 'auto_fit_points', '50', help=None),
- Setting('fitting', 'auto_slope_span', '20', help=None),
- Setting('fitting', 'auto_delta_force', '1-', help=None),
- Setting('fitting', 'auto_fit_nm', '5', help=None),
- Setting('fitting', 'auto_min_p', '0.005', help=None),
- Setting('fitting', 'auto_max_p', '10', help=None),
-
- Setting('?', 'baseline_clicks', '0', help=None),
- Setting('fitting', 'auto_left_baseline', '20', help=None),
- Setting('fitting', 'auto_right_baseline', '20', help=None),
- Setting('fitting', 'force_multiplier', '1', help=None),
-
- Setting('display', 'fc_showphase', '0', help=None),
- Setting('display', 'fc_showimposed', '0', help=None),
- Setting('display', 'fc_interesting', '0', help=None),
- Setting('?', 'tccd_threshold', '0', help=None),
- Setting('?', 'tccd_coincident', '0', help=None),
- Setting('display', '', '', help=None),
- Setting('display', '', '', help=None),
-
- Setting('filesystem', 'filterindex', '0', help=None),
- Setting('filesystem', 'filters',
- "Playlist files (*.hkp)|*.hkp|Text files (*.txt)|*.txt|All files (*.*)|*.*')",
- help=None),
- Setting('filesystem', 'workdir', 'test',
- help='\n'.join(['# Substitute your work directory',
- '#workdir = D:\hooke']),
- wrap=False),
- Setting('filesystem', 'playlist', 'test.hkp', help=None),
+ Setting('conditions', help='Default environmental conditions in case they are not specified in the force curve data.'),
+ Setting('conditions', 'temperature', '301', help='Temperature in Kelvin'),
+ # Logging settings
+ Setting('loggers', help='Configure loggers, see\nhttp://docs.python.org/library/logging.html#configuration-file-format', wrap=False),
+ Setting('loggers', 'keys', 'root, hooke', help='Hooke only uses the hooke logger, but other included modules may also use logging and you can configure their loggers here as well.'),
+ Setting('handlers', help='Configure log handlers, see\nhttp://docs.python.org/library/logging.html#configuration-file-format', wrap=False),
+ Setting('handlers', 'keys', 'hand1'),
+ Setting('formatters', help='Configure log formatters, see\nhttp://docs.python.org/library/logging.html#configuration-file-format', wrap=False),
+ Setting('formatters', 'keys', 'form1'),
+ Setting('logger_root', help='Configure the root logger, see\nhttp://docs.python.org/library/logging.html#configuration-file-format', wrap=False),
+ Setting('logger_root', 'level', 'NOTSET'),
+ Setting('logger_root', 'handlers', 'hand1'),
+ Setting('logger_hooke', help='Configure the hooke logger, see\nhttp://docs.python.org/library/logging.html#configuration-file-format', wrap=False),
+ Setting('logger_hooke', 'level', 'DEBUG'),
+ Setting('logger_hooke', 'handlers', 'hand1', help='No specific handlers here, just propagate up to the root logger'),
+ Setting('logger_hooke', 'propagate', '0'),
+ Setting('logger_hooke', 'qualname', 'hooke'),
+ Setting('handler_hand1', help='Configure the default log handler, see\nhttp://docs.python.org/library/logging.html#configuration-file-format', wrap=False),
+ Setting('handler_hand1', 'class', 'StreamHandler'),
+ Setting('handler_hand1', 'level', 'NOTSET'),
+ Setting('handler_hand1', 'formatter', 'form1'),
+ Setting('handler_hand1', 'args', '(sys.stderr,)'),
+ Setting('formatter_form1', help='Configure the default log formatter, see\nhttp://docs.python.org/library/logging.html#configuration-file-format', wrap=False),
+ Setting('formatter_form1', 'format', '%(asctime)s %(levelname)s %(message)s'),
+ Setting('formatter_form1', 'datefmt', '', help='Leave blank for ISO8601, e.g. "2003-01-23 00:29:50,411".'),
+ Setting('formatter_form1', 'class', 'logging.Formatter'),
]
def get_setting(settings, match):
>>> c = HookeConfigParser(paths=DEFAULT_PATHS,
... default_settings=DEFAULT_SETTINGS)
>>> c.write(sys.stdout) # doctest: +ELLIPSIS
- # Control display appearance: colour, ???, etc.
- [display]
- colour_ext = None
- colour_ret = None
+ # Default environmental conditions in case they are not specified in
+ # the force curve data.
+ [conditions]
+ # Temperature in Kelvin
+ temperature = 301
+ <BLANKLINE>
+ # Configure loggers, see
+ # http://docs.python.org/library/logging.html#configuration-file-format
+ [loggers]
+ # Hooke only uses the hooke logger, but other included modules may
+ # also use logging and you can configure their loggers here as well.
+ keys = root, hooke
...
"""
def __init__(self, paths=None, default_settings=None, defaults=None,
projects / hooke.git / blobdiff