1 THIS CHANGELOG FILE CONTANS PRE-SVN CHANGELOGS AND SUMMARIES OF POST-SVN CHANGELOGS.
2 FROM 0.8.4 ONWARD, DETAILED CHANGELOGS ARE AVAILABLE ON THE HOOKE SUBVERSION REPOSITORY.
8 hooke does not crash if it doesn't have permissions to create the folder
9 fixed overwriting of export for curves with the same name and different numerical extension
10 fixed macrodir (out of try-catch)
11 cleaned debug output in execmacro
18 fixed autopeak slope (now unwanted slope values are discarded)
24 convfilt does not crash if a file is not a curve
26 autopeak now saves curve data correctly
27 autopeak now generates a dummy note (so that copylog/notelog is aware you measured the curve)
33 fixed DeprecationWarning in flatten
41 sanity check of CLI plugins to avoid function overloading at startup
42 hooke_cli.py ; libhooke.py:
43 now playlists keep the index (when you reload the playlist, it starts from the
45 updated plot to use _send_plot()
46 hooke.conf accepts lists as arguments for variables in <display>
47 txt, export now have consistent argument order (thanks to A.G.Casado for pointing me that)
48 txt crashes no more if no filename is given (thanks to A.G.Casado for pointing me that)
50 added add_set() , remove_set() methods to make life easier for plugin writers
52 plotmanip_correct() works with new picoforce.py deflection output (see)
55 updated wlc to use _send_plot()
56 wlc noauto now keeps the contact point
57 wlc reclick to click again the contact point
58 temperature now set in hooke.conf
60 implemented slope (thanks to Marco Brucale)
63 convfilt,peaks use flattened curve
65 (new) added macro plugin (thanks to Alberto Gomez Casado)
68 fixed trigger bug! (thanks to Alberto Gomez Casado)
69 better deflection output (separated extension,retraction)
74 removed outdated size command
79 added tutorialdriver.py driver
81 fixed (forgot close_all() method)
85 added csvdriver driver
87 fixed plot manipulators handling (now it's safe to comment a
88 plot manipulator on hooke.conf)
91 fixed possible crash when clicking two times the same point on wlc
96 fixed crash on copylog
101 Tutorial plugin, initial release
107 fixed crash on Windows
112 new configuration variable hookedir
114 copylog now checks if the destination is a real directory
118 fixed a crash in forcebase when picking two times the same point
120 fixed crash due to convfilt.conf impossible to load
121 initial implementation of the blind window for convfilt
122 initial data set maps (NOT FINISHED)
128 fixed possible crash in convfilt
129 implemented configuration file convfilt.conf
130 convfilt defaults are now 5 peaks 5 times more the noise absdev
134 fixed:now it really uses noise_absdev
139 implemented _send_plot() helper API function
142 fixed forcebase to work with subtplot
144 implemented convfilt!
145 added libpeakspot.py (helping library for convolution filter)
149 hooke_cli.py, hooke.py:
150 plateau and contact (unmaintained) deleted and scheduled for re-release in generalvramp
151 implemented _measure_N_points()
154 implemented forcebase
156 wlc now accepts and uses temperature as an argument
157 wlc has been cleaned and uses new APIs
161 hooke_cli.py, libhooke.py:
162 implemented support for defining order of plotmanip methods in hooke.conf
166 attempted fix to bug 0033 (notelog crashing Hooke when using Unicode characters)
169 began to move velocity ramp force spectroscopy-specific things in separate plugin
171 added detriggerize; "set detrigger" 0/1 disables/enables it.
174 removed detriggerize() from driver
179 rewritten txt command, now working
182 implemented detriggerize() to bypass the Picoforce trigger bug
185 implemented plotavgimpose
190 fixed error handling in notelog
191 smarter handling of directory names in genlist
192 unexpected error handling in do_plot()
194 implemented GetDisplayedPlot event and handlers
197 fixed (bug 0029) about replotting of wlc on a subtplot curve
198 multiple fitting displayed (to refine...)
202 libhooke.py , hooke.py:
203 initial support for workdir configuration variable
205 fixed Driver() etc. semantics for gracefully handling unrecognized plots
207 fixed export namehandling
208 fixed plot error handling
218 initial plugin support for the gui
219 wlc fitting now 100% plugin
220 measure_points replaces measure_couple etc. and provides much better extensibility
222 curves are sorted at beginning
225 fft now allows for user selection of curve segment; select the plot; etc.
227 added gui section of plugin, now completely independent
228 fixed bug of wlc output
230 new plugin for superimposition of curve segments (still in development)
232 all clamp commands now in a single plugin
238 fixed fft crash with Numpy 1.0.1
240 fixed crashes if plot.scatter[] was empty
241 fixed management of multiple plots (bug #0025)
243 fixed zpiezo error in measurement
244 hemingclamp.py, picoforce.py:
245 implemented close_all() method in drivers to avoid too many open files error
251 fixing and cleaning fit code: now the fit is part of a PlotObject and 100% coded in wlc.py
252 plotting of the wlc.py clicked points also begin to be part of a PlotObject
253 management of 'scatter' style property of plots
255 fixed measuring error in defl, zpiezo
257 slightly optimized has_features() routine
259 fixed derivplot for every number of vectors
260 fixed possible crash of subtplot if applied on a file with != 2 plots
263 fixed xaxis, yaxis for non-default plots: now defined from PlotObject
264 PlotObject now defines a styles[] vector
267 versioning a bit cleaned
268 fixed bug in hemingclamp.py preventing filename to appear
269 fixed wxversion problem for 2.8
270 fixed too many open files bug (bug 0024)
274 using wxversion to choose from multiple wx versions
275 fixed old dependencies remaining
278 general code updating and rewriting due to plugin support/better plot management
280 initial plugin architecture for the command line.
281 initial plugin architecture for file drivers
282 initial plugin architecture for processing plots
283 export can now export both top and bottom plot (not together)
285 wlc fitting moved to fit.py plugin
286 flatfilt moved to flatfilts.py plugin
287 subtplot, derivplot moved to procplots.py plugin
288 double plot temporarily fixed for previous commands
289 export can now export both top and bottom plot (not together)
294 double plot now default for clamp experiments
296 fixed bug that prevented flatfilt to work
297 (maybe) fixed memory leak in flatfilt
301 general code updating and rewriting due to double plot/force clamp supports
303 initial dummy menu sketch
304 hooke.py, hooke_cli.py:
305 first general support in code for double plot:
306 - derivplot now in separate plot
307 - implemented show and close commands
308 - all functions should be double plot-aware
309 - clicking a point is double plot-aware
310 libhooke.py, hooke_cli.py:
311 general code cleanup: vectors_to_plot(), subtract_plot(), find_contact_point() and derivplot routines are now methods of class HookeCurve
313 implemented quit (alias of exit)
315 libhooke.py, hooke.py, hooke_cli.py:
316 initial support for force clamp experiments:
317 - hemingclamp driver supported
318 - "experiment" flag describes what kind of experiment is a curve
319 - time, zpiezo, defl commands implemented
325 fixed stupid bug in plateau
326 fixed bug in derivplot and subtplot not taking into account xaxes/yaxes variables
328 from now on, all changelog is stored in CHANGELOG
329 hooke.py, libhooke.py, hooke_cli.py:
330 fixed plot and flatfilt crash when processing corrupt files
331 flatfilt output now more verbose
332 implemented system (execute an external OS command)
333 implemented copylog (copies annotated curves to a given directory) (todo 0033)
334 initial txt implementation (exports the current curve as a text file) (todo 0023)
335 fixed exit behaviour (bug 0013)
336 xaxes and yaxes variables now control visualization of plot (todo 0018)
337 new (better) contact point algorithm + workaround for the picoforce trigger bug
339 hooke.py, hooke_cli.py, libhooke.py:
340 support for fixed persistent length in WLC
342 hooke.py , libhooke.py:
343 fixed 'wlc noauto' bug (0012) preventing correct contact point to be used
346 implemented getlist (alias of genlist)
347 implemented contact (to plot the contact point)
348 fixed bug 0001 (Hooke crashes when opening a non-pf file)
349 fixed bug 0008 (Hooke crashes when generating a playlist with malformed namefiles/nonexistent files)
350 now the plot is refreshed after a "set" command (todo 0014)
351 wlc fit can use the (new) automatic contact point detection (old behaviour is preserved with "noauto" option)
353 fixed versioning printing
354 complete refactoring of contact point routines
355 wlc fit adapted to use the (new) automatic contact point detection
356 wlc fit code a bit cleaned; parts moved to libhooke.py
358 new contact point algorithm (new algorithm)
359 wlc fit now uses a fancier domain (from contact point to a bit more than last point); initial chunk preparation section moved from hooke.py
366 From now on, all changelog is stored in hooke.py
368 corrected bug 0010 (addtolist bug), alerts when hitting start/end of playlist
369 2006_09_15_devel=0.1.0: initial WLC fit support. We hit 0.1 milestone :D
370 2006_08_28_devel: refactoring of plot interaction
371 2006_06_14_devel: fixed libhooke calls
372 2006_06_08_devel: initial automatic contact point finding
373 2006_05_30_devel: configuration file support
376 0.1.1 : from now on, all changelog is in hooke.py
377 2006_09_15_devel: implemented wlc; 0.1.0 milestone.
378 2006_08_28_devel: refactoring of plot interaction
379 2006_07_23_devel: implemented note; implemented flatfilt; implemented notelog; exit now warns if playlist/notes
381 2006_07_18_devel: implemented subtplot; bug 0007 ("cd" crashing) fixed
382 2006_06_16_devel: moved math helper functions in libhooke.py
383 2006_06_14_devel: fixed "jump" output; fixed "exit" (now it works!); fixed off-by-one bug in deflection-correction
384 2006_06_08_devel: fixed "loadlist" output;
385 2006_05_30_devel: initial configuration file support; added "set" command; initial deflection-correction support; added "ls" command as an alias of "dir"
386 2006_05_23_devel: rewriting of playlist-handling code due to major rewrite of hooke_playlist.py
389 0.1.1 : from now on, all changelog is in hooke.py
390 2006_09_15_devel : initial WLC support
391 2006_09_14_devel : initial support for Hemingway velocity clamp files, minor refactorings
392 2006_07_22_devel : implemented math function has_features
393 2006_06_16_devel : math functions moved here
394 2006_06_08_devel : hooke_playlist.py becomes libhooke.py
395 2006_05_30_devel : support for deflection in HookeCurve
396 2006_05_29_devel : Initial configuration file support
397 2006_05_23_devel : Major rewrite. Fixed bug 0002