From cdb26a1d3c6f1070d9a8b4dd0a15e0bb312ef05f Mon Sep 17 00:00:00 2001 From: Justin Lecher Date: Sun, 29 Mar 2015 14:51:10 +0000 Subject: [PATCH] Drop old Package-Manager: portage-2.2.18/cvs/Linux x86_64 Manifest-Sign-Key: 0xB9D4F231BD1558AB! --- sci-biology/muscle/ChangeLog | 9 ++++-- sci-biology/muscle/Manifest | 41 +++++++++++++++---------- sci-biology/muscle/metadata.xml | 2 +- sci-biology/muscle/muscle-3.6.ebuild | 41 ------------------------- sci-biology/muscle/muscle-3.7.ebuild | 41 ------------------------- sci-biology/muscle/muscle-3.8.31.ebuild | 10 +++--- 6 files changed, 37 insertions(+), 107 deletions(-) delete mode 100644 sci-biology/muscle/muscle-3.6.ebuild delete mode 100644 sci-biology/muscle/muscle-3.7.ebuild diff --git a/sci-biology/muscle/ChangeLog b/sci-biology/muscle/ChangeLog index 96a439e92c8d..029db5be20cf 100644 --- a/sci-biology/muscle/ChangeLog +++ b/sci-biology/muscle/ChangeLog @@ -1,6 +1,10 @@ # ChangeLog for sci-biology/muscle -# Copyright 1999-2010 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/muscle/ChangeLog,v 1.15 2010/07/20 11:54:30 josejx Exp $ +# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/muscle/ChangeLog,v 1.16 2015/03/29 14:51:05 jlec Exp $ + + 29 Mar 2015; Justin Lecher -muscle-3.6.ebuild, + -muscle-3.7.ebuild, metadata.xml, muscle-3.8.31.ebuild: + Drop old 20 Jul 2010; Joseph Jezak muscle-3.7-r1.ebuild: Marked ppc stable for bug #277980. @@ -59,4 +63,3 @@ New multiple sequence alignment package. Provides a great tradeoff between runtime and quality for global alignments; quite a bit worse on local alignments. - diff --git a/sci-biology/muscle/Manifest b/sci-biology/muscle/Manifest index fc2558e9d9ea..056de7cf20f0 100644 --- a/sci-biology/muscle/Manifest +++ b/sci-biology/muscle/Manifest @@ -1,21 +1,30 @@ -----BEGIN PGP SIGNED MESSAGE----- -Hash: SHA1 +Hash: SHA512 -AUX 3.7-bufferoverflow.patch 595 RMD160 ea1634cdf67e0c40425b37146b2a7dbb6a13f0a7 SHA1 682b2bb28f22c234deb77e34b2497f5e59b1cc46 SHA256 2acf33bcf8ebb6ee6c4171fd0dd4407a08a3c4577902c683a948a1b3231a243e -AUX 3.8.31-make.patch 989 RMD160 22e88148f5701f5d7d6910c5f1bbd86e26220127 SHA1 2f55918397322ffe83464b3da5e3e5d972a40f63 SHA256 f5352a5fc8a792d7af177d1e829a33e59bc39dedb81baf17c6424f8520ea6879 -DIST muscle3.6_src.tar.gz 185267 RMD160 4afda92b982ec2b05853a582479c61a7d8814f51 SHA1 e8a4998ee10a8f067fd1ba63966e32e69da62d36 SHA256 32b818a51f421e1d687f513dc31374a330470950151a5e7df961e64781699431 -DIST muscle3.7_src.tar.gz 189907 RMD160 6eb64afd2032914781f453b925589c35e432b96c SHA1 6a3cbef3a8a00cf230f17bf90592f7108607d103 SHA256 a028f545612f9d260e35909959e98ae7aec552b1eac8806c3ae59cf1b00f7235 -DIST muscle3.8.31_src.tar.gz 515267 RMD160 18c9cf465f330a77d6a06ff9323c311a6f6be662 SHA1 2fe55db73ff4e7ac6d4ca692f8f213d1c5071dac SHA256 43c5966a82133bd7da5921e8142f2f592c2b5f53d802f0527a2801783af809ad -EBUILD muscle-3.6.ebuild 847 RMD160 8a29fc7b68c5fb0c3680c513ede51aeaeaad4b11 SHA1 c38e5eebcf8f35e430f85f958de35083295ae0f0 SHA256 f3c041cb767be4e858a5854a03ee51e8424cd4197a7c723c4b28a46705a80c67 -EBUILD muscle-3.7-r1.ebuild 930 RMD160 d15d40d6eab6ee1b2e354926ee0f37afd2974cdb SHA1 be7f3d6509dd12ee680b55b9a891d158d4565fd4 SHA256 0379c05b8523067a9f4160278e1bb8e5803df0f0220f2bc0f79f9d276f8f4809 -EBUILD muscle-3.7.ebuild 844 RMD160 1335020b6dcd0b8107165ada30a4c2ce4790ed86 SHA1 36c7c37bed6ac9c26e2a74646a39131630084b92 SHA256 9c6826b8d266d05f79f61c6940b36dbc54adea197eaf19cfad605543f6517d2b -EBUILD muscle-3.8.31.ebuild 733 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100644 index f4fedf84f566..000000000000 --- a/sci-biology/muscle/muscle-3.6.ebuild +++ /dev/null @@ -1,41 +0,0 @@ -# Copyright 1999-2010 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/muscle/muscle-3.6.ebuild,v 1.6 2010/06/24 19:03:18 jlec Exp $ - -inherit toolchain-funcs - -MY_P="${PN}${PV}_src" -DESCRIPTION="Multiple sequence comparison by log-expectation" -HOMEPAGE="http://www.drive5.com/muscle/" -SRC_URI="http://www.drive5.com/muscle/downloads${PV}/${MY_P}.tar.gz" -LICENSE="public-domain" - -SLOT="0" -KEYWORDS="amd64 ppc x86" -IUSE="" - -RDEPEND="!sci-libs/libmuscle" -DEPEND="${RDEPEND}" - -S="${WORKDIR}/${MY_P}" - -src_unpack() { - unpack ${A} - sed -i \ - "s:-static::g" \ - "${S}/Makefile" - sed -i \ - "/strip/d" \ - "${S}/Makefile" -} - -src_compile() { - emake \ - GPP="$(tc-getCXX)" \ - CFLAGS="${CXXFLAGS}" \ - || die "make failed" -} - -src_install() { - DESTTREE="/usr" dobin muscle -} diff --git a/sci-biology/muscle/muscle-3.7.ebuild b/sci-biology/muscle/muscle-3.7.ebuild deleted file mode 100644 index 61ade0a92b15..000000000000 --- a/sci-biology/muscle/muscle-3.7.ebuild +++ /dev/null @@ -1,41 +0,0 @@ -# Copyright 1999-2010 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/muscle/muscle-3.7.ebuild,v 1.3 2010/06/24 20:47:35 angelos Exp $ - -inherit toolchain-funcs - -MY_P="${PN}${PV}_src" -DESCRIPTION="Multiple sequence comparison by log-expectation" -HOMEPAGE="http://www.drive5.com/muscle/" -SRC_URI="http://www.drive5.com/muscle/downloads${PV}/${MY_P}.tar.gz" - -LICENSE="public-domain" -SLOT="0" -KEYWORDS="amd64 ~ppc ~x86" -IUSE="" - -RDEPEND="!sci-libs/libmuscle" -DEPEND="${RDEPEND}" - -S="${WORKDIR}" - -src_unpack() { - unpack ${A} - sed -i \ - "s:-static::g" \ - "${S}/Makefile" - sed -i \ - "/strip/d" \ - "${S}/Makefile" -} - -src_compile() { - emake \ - GPP="$(tc-getCXX)" \ - CFLAGS="${CXXFLAGS}" \ - || die "make failed" -} - -src_install() { - DESTTREE="/usr" dobin muscle -} diff --git a/sci-biology/muscle/muscle-3.8.31.ebuild b/sci-biology/muscle/muscle-3.8.31.ebuild index cfd0d79ac4c2..e38f475716b9 100644 --- a/sci-biology/muscle/muscle-3.8.31.ebuild +++ b/sci-biology/muscle/muscle-3.8.31.ebuild @@ -1,8 +1,8 @@ -# Copyright 1999-2010 Gentoo Foundation +# Copyright 1999-2015 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/muscle/muscle-3.8.31.ebuild,v 1.1 2010/06/24 19:03:18 jlec Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-biology/muscle/muscle-3.8.31.ebuild,v 1.2 2015/03/29 14:51:05 jlec Exp $ -EAPI="3" +EAPI=5 inherit eutils toolchain-funcs @@ -28,6 +28,6 @@ src_prepare() { } src_install() { - dobin "${PN}" || die - dodoc *.txt || die + dobin "${PN}" + dodoc *.txt } -- 2.26.2