From c16d69142f648168a890a0172696a081bede9d0a Mon Sep 17 00:00:00 2001
From: Justin Lecher <jlec@gentoo.org>
Date: Thu, 1 Jul 2010 08:16:21 +0000
Subject: [PATCH] Fixed allignment.patch part II Package-Manager:
 portage-2.2_rc67/cvs/Linux x86_64

---
 sci-libs/mmdb/ChangeLog                       |  8 ++-
 sci-libs/mmdb/Manifest                        | 12 ++--
 sci-libs/mmdb/files/1.21-allignment.patch     | 64 +++----------------
 ...mdb-1.21-r1.ebuild => mmdb-1.21-r2.ebuild} |  6 +-
 4 files changed, 24 insertions(+), 66 deletions(-)
 rename sci-libs/mmdb/{mmdb-1.21-r1.ebuild => mmdb-1.21-r2.ebuild} (88%)

diff --git a/sci-libs/mmdb/ChangeLog b/sci-libs/mmdb/ChangeLog
index 435e39c27816..40aecae6b0ab 100644
--- a/sci-libs/mmdb/ChangeLog
+++ b/sci-libs/mmdb/ChangeLog
@@ -1,6 +1,12 @@
 # ChangeLog for sci-libs/mmdb
 # Copyright 1999-2010 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-libs/mmdb/ChangeLog,v 1.8 2010/07/01 07:07:35 jlec Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-libs/mmdb/ChangeLog,v 1.9 2010/07/01 08:16:21 jlec Exp $
+
+*mmdb-1.21-r2 (01 Jul 2010)
+
+  01 Jul 2010; Justin Lecher <jlec@gentoo.org> -mmdb-1.21-r1.ebuild,
+  +mmdb-1.21-r2.ebuild:
+  Fix pkg-config file
 
   01 Jul 2010; Justin Lecher <jlec@gentoo.org> files/1.21-allignment.patch:
   Fixed allignment.patch
diff --git a/sci-libs/mmdb/Manifest b/sci-libs/mmdb/Manifest
index 4fdaf793d0d6..6c58f1d181f5 100644
--- a/sci-libs/mmdb/Manifest
+++ b/sci-libs/mmdb/Manifest
@@ -1,16 +1,16 @@
 -----BEGIN PGP SIGNED MESSAGE-----
 Hash: SHA1
 
-AUX 1.21-allignment.patch 8974 RMD160 ebb228a1463b44a90523b69da7b9f2eb7e99c772 SHA1 765cfb30f3cecea20614a2fa7733fb501649986d SHA256 db5fe3573ae5aca318c44281504fb44f68bfb3f05124b21d9370ff648ac14e75
+AUX 1.21-allignment.patch 6654 RMD160 b0044a35aeaf63f125250279fc9d2ae8d9c6301d SHA1 7806b608ddd9a498eb9b3437d662df297f1957f2 SHA256 748d95718018b84f0b1938ec553256177642b1ee5c8394994f2131c3e1c1129d
 DIST mmdb-1.21.tar.gz 675301 RMD160 9feb5660ffb79289a796bde5e5effffc3e81a4af SHA1 cc17a4f12448e21ce9d0c772b269b42d417113fb SHA256 508dcb4bc3a8f9552d930edf019cd2a3750c5fa794d8a95e6a22eaeaeb5ab0be
-EBUILD mmdb-1.21-r1.ebuild 1150 RMD160 c12ad83a279fc3d22a3b6dcb058da3fb93ddd291 SHA1 9a2d9a4b3a390374db310098deecfac485c617a6 SHA256 218280cb023aa3fc63b3c59d2e34bee538c7197ad0563bff6af7a3edd88e4f27
+EBUILD mmdb-1.21-r2.ebuild 1148 RMD160 4559b587e5cc11bd05e5f701204382e73cc2c955 SHA1 7d70af6fc91bd9776b1a14656f683f330934a4f1 SHA256 a4e55e03d354dc7488124a0ec89b0f51ea3bdb6a26f660608b2ff01ba134598e
 EBUILD mmdb-1.21.ebuild 663 RMD160 ee59666e91338ab493ad110e5329f3162a0ef80d SHA1 8c26daf1cf95cce8cdbf45fb2bf85d1548557b7a SHA256 4e21977ec66ff3b01a4993238a8f9c71fcfc089179641b2dff541442cf016080
-MISC ChangeLog 1355 RMD160 920620ad7c73fec651915f01ef9d57f4ffdcf378 SHA1 ac155f986606866d009c615c0984debf00071ac5 SHA256 668d1e9816c047ebf0ce3fd875dd547e344ffadf6f65a5b1a7e16122d2667891
+MISC ChangeLog 1500 RMD160 f7737ab25ae577da06906bb81c77ffb2ef937a72 SHA1 b8da256166454749b70d15993ccb224c8c202646 SHA256 4791da521842e9d8648236c349457ff99cd8418341a15d789f3e9f3b9f76c1b3
 MISC metadata.xml 167 RMD160 ea4003a55d6e2079381a540c441fc59cde29025a SHA1 3bc6dc4dd68f7de22828138e62aa117387b1765d SHA256 f313eeec4ebffac500b57a98a225e32c77489fc826a50494749b6cdeec28e3e8
 -----BEGIN PGP SIGNATURE-----
 Version: GnuPG v2.0.15 (GNU/Linux)
 
-iEYEARECAAYFAkwsPsIACgkQgAnW8HDreRbl4wCcCGy0Wm+7LWlNPrD1fQpfywSz
-VS8AniFX/v+iFezC+fek1s1I+0WchGmk
-=n0wx
+iEYEARECAAYFAkwsTtsACgkQgAnW8HDreRbr9wCgjbr/+Zy1PWXn5pHJNFltvKKr
+JgYAoJ+4FR+I4oin/WPbk1V+lFpjDdQN
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diff --git a/sci-libs/mmdb/files/1.21-allignment.patch b/sci-libs/mmdb/files/1.21-allignment.patch
index 970982314810..edc4cc44b785 100644
--- a/sci-libs/mmdb/files/1.21-allignment.patch
+++ b/sci-libs/mmdb/files/1.21-allignment.patch
@@ -1,13 +1,7 @@
 diff --git a/src/file_.cpp b/src/file_.cpp
-index 4071886..a50e2ad 100644
+index 4071886..6bfa648 100644
 --- a/src/file_.cpp
 +++ b/src/file_.cpp
-@@ -1,4 +1,4 @@
--//  $Id: 1.21-allignment.patch,v 1.2 2010/07/01 07:07:35 jlec Exp $
-+//  $Id: 1.21-allignment.patch,v 1.2 2010/07/01 07:07:35 jlec Exp $
- //  =================================================================
- //
- //   CCP4 Coordinate Library: support of coordinate-related
 @@ -347,10 +347,10 @@ int  i;
            if (i>0)  sleep ( 1 );
  #endif
@@ -22,15 +16,9 @@ index 4071886..a50e2ad 100644
            }
  #ifndef _MVS
 diff --git a/src/machine_.h b/src/machine_.h
-index 2e81264..c658981 100644
+index 2e81264..7b18675 100644
 --- a/src/machine_.h
 +++ b/src/machine_.h
-@@ -1,4 +1,4 @@
--//  $Id: 1.21-allignment.patch,v 1.2 2010/07/01 07:07:35 jlec Exp $
-+//  $Id: 1.21-allignment.patch,v 1.2 2010/07/01 07:07:35 jlec Exp $
- //  =================================================================
- //
- //   CCP4 Coordinate Library: support of coordinate-related
 @@ -127,8 +127,12 @@
  # define CALL_LIKE_VMS  1
  
@@ -92,15 +80,9 @@ index 2e81264..c658981 100644
  
  # error  Unknown machine!!!
 diff --git a/src/mmdb_atom.h b/src/mmdb_atom.h
-index 45049c8..672e11a 100644
+index 45049c8..5d0af2a 100644
 --- a/src/mmdb_atom.h
 +++ b/src/mmdb_atom.h
-@@ -1,4 +1,4 @@
--//  $Id: 1.21-allignment.patch,v 1.2 2010/07/01 07:07:35 jlec Exp $
-+//  $Id: 1.21-allignment.patch,v 1.2 2010/07/01 07:07:35 jlec Exp $
- //  =================================================================
- //
- //   CCP4 Coordinate Library: support of coordinate-related
 @@ -290,7 +290,7 @@ class CAtom : public CUDData  {
      void  CalcAtomStatistics ( RSAtomStat AS );
      realtype GetDist2 ( PCAtom a );
@@ -111,15 +93,9 @@ index 45049c8..672e11a 100644
  
      // GetCosine(a1,a2) calculates cosine of angle a1-this-a2,
 diff --git a/src/mmdb_chain.cpp b/src/mmdb_chain.cpp
-index a6f66c2..1fa165b 100644
+index a6f66c2..24baa37 100644
 --- a/src/mmdb_chain.cpp
 +++ b/src/mmdb_chain.cpp
-@@ -1,4 +1,4 @@
--//  $Id: 1.21-allignment.patch,v 1.2 2010/07/01 07:07:35 jlec Exp $
-+//  $Id: 1.21-allignment.patch,v 1.2 2010/07/01 07:07:35 jlec Exp $
- //  =================================================================
- //
- //   CCP4 Coordinate Library: support of coordinate-related
 @@ -672,7 +672,8 @@ int  i,k,sN;
      i  = 0;
      sN = 1;
@@ -131,15 +107,9 @@ index a6f66c2..1fa165b 100644
        while ((i<numRes) && (k<70))  {
          if (resName[i][0])
 diff --git a/src/mmdb_rwbrook.cpp b/src/mmdb_rwbrook.cpp
-index dc33086..ef58641 100644
+index dc33086..5d319c3 100644
 --- a/src/mmdb_rwbrook.cpp
 +++ b/src/mmdb_rwbrook.cpp
-@@ -1,4 +1,4 @@
--//  $Id: 1.21-allignment.patch,v 1.2 2010/07/01 07:07:35 jlec Exp $
-+//  $Id: 1.21-allignment.patch,v 1.2 2010/07/01 07:07:35 jlec Exp $
- //  =================================================================
- //
- //   CCP4 Coordinate Library: support of coordinate-related
 @@ -1478,7 +1478,6 @@ AltLoc   altLoc;
  SegID    sgID;
  Element  element;
@@ -180,15 +150,9 @@ index dc33086..ef58641 100644
  
  
 diff --git a/src/mmdb_sbase0.cpp b/src/mmdb_sbase0.cpp
-index a210d62..3bf0d52 100644
+index a210d62..cb8d719 100644
 --- a/src/mmdb_sbase0.cpp
 +++ b/src/mmdb_sbase0.cpp
-@@ -1,4 +1,4 @@
--//  $Id: 1.21-allignment.patch,v 1.2 2010/07/01 07:07:35 jlec Exp $
-+//  $Id: 1.21-allignment.patch,v 1.2 2010/07/01 07:07:35 jlec Exp $
- //  =================================================================
- //
- //   CCP4 Coordinate Library: support of coordinate-related
 @@ -1320,7 +1320,11 @@ PPCSBIndex Index1;
      dirpath = new char[i+10];
      strcpy ( dirpath,path );
@@ -202,15 +166,9 @@ index a210d62..3bf0d52 100644
    }
  
 diff --git a/src/mmdb_selmngr.cpp b/src/mmdb_selmngr.cpp
-index b923529..3a9e249 100644
+index b923529..4395dde 100644
 --- a/src/mmdb_selmngr.cpp
 +++ b/src/mmdb_selmngr.cpp
-@@ -1,4 +1,4 @@
--//  $Id: 1.21-allignment.patch,v 1.2 2010/07/01 07:07:35 jlec Exp $
-+//  $Id: 1.21-allignment.patch,v 1.2 2010/07/01 07:07:35 jlec Exp $
- //  =================================================================
- //
- //   CCP4 Coordinate Library: support of coordinate-related
 @@ -1158,7 +1158,7 @@ void  CMMDBSelManager::Select (
               int   selKey    // selection key
                      )  {
@@ -221,15 +179,9 @@ index b923529..3a9e249 100644
  PCChain   chain;
  PCResidue res;
 diff --git a/src/mmdb_title.cpp b/src/mmdb_title.cpp
-index b0b2ae5..1033ae5 100644
+index b0b2ae5..627173f 100644
 --- a/src/mmdb_title.cpp
 +++ b/src/mmdb_title.cpp
-@@ -1,4 +1,4 @@
--//  $Id: 1.21-allignment.patch,v 1.2 2010/07/01 07:07:35 jlec Exp $
-+//  $Id: 1.21-allignment.patch,v 1.2 2010/07/01 07:07:35 jlec Exp $
- //  =================================================================
- //
- //   CCP4 Coordinate Library: support of coordinate-related
 @@ -1381,6 +1381,10 @@ MakeStreamFunctions(CRemark)
  #define  R350_CHAINS         2
  #define  R350_BIOMT          3
diff --git a/sci-libs/mmdb/mmdb-1.21-r1.ebuild b/sci-libs/mmdb/mmdb-1.21-r2.ebuild
similarity index 88%
rename from sci-libs/mmdb/mmdb-1.21-r1.ebuild
rename to sci-libs/mmdb/mmdb-1.21-r2.ebuild
index d056f8c2b7a6..a1a1cbfb914b 100644
--- a/sci-libs/mmdb/mmdb-1.21-r1.ebuild
+++ b/sci-libs/mmdb/mmdb-1.21-r2.ebuild
@@ -1,8 +1,8 @@
 # Copyright 1999-2010 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-libs/mmdb/mmdb-1.21-r1.ebuild,v 1.1 2010/06/30 20:55:04 jlec Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-libs/mmdb/mmdb-1.21-r2.ebuild,v 1.1 2010/07/01 08:16:21 jlec Exp $
 
-EAPI="2"
+EAPI="3"
 
 inherit autotools eutils
 
@@ -28,7 +28,7 @@ src_install() {
 
 	# create missing mmdb.pc
 	cat >> ${T}/mmdb.pc <<- EOF
-	prefix="${EPREFIX}"
+	prefix=${EPREFIX}
 	exec_prefix=\$prefix
 	libdir=\$prefix/$(get_libdir)
 	includedir=\$prefix/include
-- 
2.26.2