From 7debc3735baec3b152ad93cf7b436ed64002705f Mon Sep 17 00:00:00 2001
From: David Seifert <soap@gentoo.org>
Date: Mon, 8 Feb 2016 22:31:10 +0100
Subject: [PATCH] sci-biology/mira: Add missing <sys-devel/flex-2.6.0
 dependency

Gentoo-Bug: 574172
* Fix GCC5 explicit conversion of 'nullptr' to 'bool'
* Fix overlong DESCRIPTION

Package-Manager: portage-2.2.27
---
 sci-biology/mira/files/mira-4.0.2-cout.patch | 11 +++++++++++
 sci-biology/mira/mira-4.0.2.ebuild           |  5 +++--
 2 files changed, 14 insertions(+), 2 deletions(-)

diff --git a/sci-biology/mira/files/mira-4.0.2-cout.patch b/sci-biology/mira/files/mira-4.0.2-cout.patch
index 14feb0284c9f..78e7168cb49d 100644
--- a/sci-biology/mira/files/mira-4.0.2-cout.patch
+++ b/sci-biology/mira/files/mira-4.0.2-cout.patch
@@ -14,3 +14,14 @@ index 47e5ee8..060b6f3 100644
  // make the "tcmalloc: large alloc" messages from TCMallom disappear
  // by setting the reporting environment variable to a very large value
  // see: http://groups.google.com/group/google-perftools/browse_thread/thread/24a003fc35f3d470?pli=1
+--- a/src/mira/parameters.C
++++ b/src/mira/parameters.C
+@@ -2222,7 +2222,7 @@
+     MIRANOTIFY(Notify::FATAL, "File not found: " << pfile);
+   }
+ 
+-  parse(fin, Pv, nullptr);
++  parse(fin, Pv, false);
+ 
+   fin.close();
+ 
diff --git a/sci-biology/mira/mira-4.0.2.ebuild b/sci-biology/mira/mira-4.0.2.ebuild
index b89246b2304b..9b04aac4a3a6 100644
--- a/sci-biology/mira/mira-4.0.2.ebuild
+++ b/sci-biology/mira/mira-4.0.2.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2015 Gentoo Foundation
+# Copyright 1999-2016 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
 # $Id$
 
@@ -9,7 +9,7 @@ MY_PV="${PV/_}" # convert from mira-4.0_rc2 (Gentoo ebuild filename derived) to
 
 inherit autotools eutils multilib
 
-DESCRIPTION="Whole Genome Shotgun and EST Sequence Assembler for Sanger, 454 and Solexa / Illumina"
+DESCRIPTION="Whole Genome Shotgun and EST Sequence Assembler for Sanger, 454 and Illumina"
 HOMEPAGE="http://www.chevreux.org/projects_mira.html"
 SRC_URI="
 	http://sourceforge.net/projects/mira-assembler/files/MIRA/stable/"${PN}"-"${MY_PV}".tar.bz2
@@ -28,6 +28,7 @@ CDEPEND="
 	dev-libs/boost[threads]
 	dev-util/google-perftools"
 DEPEND="${CDEPEND}
+	<sys-devel/flex-2.6.0
 	app-editors/vim-core
 	dev-libs/expat"
 RDEPEND="${CDEPEND}"
-- 
2.26.2