From 626f09bab5b965617a687c12247eb880f3ea7563 Mon Sep 17 00:00:00 2001 From: Andrey Kislyuk Date: Fri, 12 Aug 2011 15:48:21 +0000 Subject: [PATCH] Version bump Package-Manager: portage-2.2.0_alpha45/cvs/Linux x86_64 --- sci-biology/amos/ChangeLog | 9 ++++++++- sci-biology/amos/Manifest | 16 ++++++++++------ sci-biology/amos/amos-3.0.1.ebuild | 30 ++++++++++++++++++++++++++++++ sci-biology/amos/amos-3.1.0.ebuild | 30 ++++++++++++++++++++++++++++++ sci-biology/amos/metadata.xml | 3 +++ 5 files changed, 81 insertions(+), 7 deletions(-) create mode 100644 sci-biology/amos/amos-3.0.1.ebuild create mode 100644 sci-biology/amos/amos-3.1.0.ebuild diff --git a/sci-biology/amos/ChangeLog b/sci-biology/amos/ChangeLog index af74e34b8945..b91321d046aa 100644 --- a/sci-biology/amos/ChangeLog +++ b/sci-biology/amos/ChangeLog @@ -1,6 +1,13 @@ # ChangeLog for sci-biology/amos # Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/amos/ChangeLog,v 1.10 2011/05/28 19:26:40 phajdan.jr Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-biology/amos/ChangeLog,v 1.11 2011/08/12 15:48:20 weaver Exp $ + +*amos-3.1.0 (12 Aug 2011) +*amos-3.0.1 (12 Aug 2011) + + 12 Aug 2011; Andrey Kislyuk +amos-3.0.1.ebuild, + +amos-3.1.0.ebuild: + Version bump 28 May 2011; Pawel Hajdan jr amos-3.0.0.ebuild: x86 stable wrt bug #368287 diff --git a/sci-biology/amos/Manifest b/sci-biology/amos/Manifest index 87c990bac737..5145685ecc13 100644 --- a/sci-biology/amos/Manifest +++ b/sci-biology/amos/Manifest @@ -4,14 +4,18 @@ Hash: SHA1 AUX amos-2.0.8-gcc44.patch 3555 RMD160 8bf9d9f6290b573b373542d180f8f788d8042334 SHA1 0d5b92c9203ce4a0ba4681b301ee419984d9b3ba SHA256 e07bd2b40ee21db39d096db5367ef7c12baa78ba776101919945f60b8507d5b1 DIST amos-2.0.8.tar.gz 1757124 RMD160 98cfa30081e849a36285e159010ab85b3a116eeb SHA1 3b59c07325b108df9683a57dc168cdf60714cedc SHA256 5c8adf33816278411ead7ad2f6509ebfee2388f9cb89d2196d8e5ad9b0c8ffd1 DIST amos-3.0.0.tar.gz 1940705 RMD160 3c2f2819696b01a5e7fc293e0f76f5ee591c7b57 SHA1 7ffc685ae9bb354b163916609189d3cb3c6775b5 SHA256 6426ca20dd98b7f9329c016a8b61b98f7d71bf1527e32441efca8beaf55792af +DIST amos-3.0.1.tar.gz 1876671 RMD160 857c9703ba11391a1fbe1bea1b950c8bf81dc21e SHA1 977b66f24565d29e01b6c30c1b44636f4d6527f8 SHA256 3c6638c8c012b2a8457d1d1f15ac207e42db662a68da9d90f6d08a81462a6b63 +DIST amos-3.1.0.tar.gz 2094268 RMD160 2ee8cb46c18d2807878feed5a9df94230db180e2 SHA1 28e799e37713594ba7147d300ecae6574beb14a4 SHA256 2d9f50e39186ad3dde3d3b28cc265e8d632430657f40fc3978ce34ab1b3db43b EBUILD amos-2.0.8-r1.ebuild 843 RMD160 56cb133c15ee3edb74eab731990465e9a5d38ad4 SHA1 b7880ccf266a5779a22acd80c436c8953d01540a SHA256 f40d1a766830bddc1dca3ab715e7a85270acd5871343815b304ab4f55a053475 EBUILD amos-3.0.0.ebuild 680 RMD160 6edbbf991063fc2230718a01110d1bfe37399cbf SHA1 f9b95020529356574772849409ed9f3740889723 SHA256 d6da11cfbf41cedc32ace765ab4cfacd0b7c246c94452412e273d4fed21452a9 -MISC ChangeLog 1436 RMD160 cdf28bd01ce015200d73b4e59711da8cadfa489f SHA1 9dcee061f6bffd6a116fe5f283c07bc475ddc637 SHA256 8916fe13a4a7f935802301147d339d23d19d9b46a78d84d1ad6c02ab4c6c9720 -MISC metadata.xml 259 RMD160 d9d81b67d635fabd81aef8ae0edf971211ae9072 SHA1 8e32f751c67ff891fa35405a2cf6fb33752d6eb1 SHA256 541c3fbcf299d9a8ccf4132ee61f9e53a5d737cefdaa6fdc77764d8d4c7f3110 +EBUILD amos-3.0.1.ebuild 678 RMD160 634708e69761a33376cd058b77b79885eeb50105 SHA1 0c2b430fb94351b46d6f58a435bc5b5563a06abf SHA256 b0b9319e52b6cdac7fbeacf6170242941686d928892afd0347432621d99f1594 +EBUILD amos-3.1.0.ebuild 707 RMD160 6f82db38eeb800a1832064111aadde59a7efdd70 SHA1 17234a61c145990259ec1f6d30aa60b2b7c404c7 SHA256 7e19c1af679fce960889468f955045fe61ecd9f766010eac9e7214163d025ed5 +MISC ChangeLog 1593 RMD160 8312613dd7dd640a34817ba668ea0f5c5c1a85f6 SHA1 b025e3608975cb2bbfdbccab8e1b1bef0872a25f SHA256 4eaf5c42527a5eff2fdfc76666f1b95a4af923d5b47474a7170cba5ce9ad2a74 +MISC metadata.xml 335 RMD160 39a05672490ffcb50781544bfb0e35d962e39cd2 SHA1 956b476760d63aba00a5a39715a5af9bc8af5418 SHA256 e45d9aed28673c90154e31ef8f1d043dfe302b65a2545160e716e0b227c035b0 -----BEGIN PGP SIGNATURE----- -Version: GnuPG v2.0.17 (GNU/Linux) +Version: GnuPG v1.4.11 (GNU/Linux) -iEYEARECAAYFAk3hTHMACgkQuUQtlDBCeQInxwCeNPZbtJqKRlj1yCiXsaw7FsUD -lTQAn0yuR1Bdt6tmnmDNEYjfz8XrHbnA -=nSbk +iEYEARECAAYFAk5FS0oACgkQ8xSwyhbn2ObhqQCaA3AkaPlmRJHtTJ2bdYT3LY+g +m6QAnRaKV1VLmIHaIKvnRgSX2XzkHs62 +=PJOe -----END PGP SIGNATURE----- diff --git a/sci-biology/amos/amos-3.0.1.ebuild b/sci-biology/amos/amos-3.0.1.ebuild new file mode 100644 index 000000000000..fe8bd7bda324 --- /dev/null +++ b/sci-biology/amos/amos-3.0.1.ebuild @@ -0,0 +1,30 @@ +# Copyright 1999-2011 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/amos/amos-3.0.1.ebuild,v 1.1 2011/08/12 15:48:21 weaver Exp $ + +EAPI="3" + +inherit eutils + +DESCRIPTION="A Modular, Open-Source whole genome assembler" +HOMEPAGE="http://amos.sourceforge.net/" +SRC_URI="mirror://sourceforge/${PN}/${P}.tar.gz" + +LICENSE="Artistic" +SLOT="0" +IUSE="" +KEYWORDS="~amd64 ~x86" + +#DEPEND=">=x11-libs/qt-3.3:3" +DEPEND="" +RDEPEND="${DEPEND} + dev-perl/DBI + sci-biology/mummer" + +src_compile() { + emake -j1 || die "emake failed" +} + +src_install() { + emake DESTDIR="${D}" install || die "emake install failed" +} diff --git a/sci-biology/amos/amos-3.1.0.ebuild b/sci-biology/amos/amos-3.1.0.ebuild new file mode 100644 index 000000000000..d169bb542084 --- /dev/null +++ b/sci-biology/amos/amos-3.1.0.ebuild @@ -0,0 +1,30 @@ +# Copyright 1999-2011 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/amos/amos-3.1.0.ebuild,v 1.1 2011/08/12 15:48:21 weaver Exp $ + +EAPI=4 + +inherit eutils + +DESCRIPTION="A Modular, Open-Source whole genome assembler" +HOMEPAGE="http://amos.sourceforge.net/" +SRC_URI="mirror://sourceforge/${PN}/${P}.tar.gz" + +LICENSE="Artistic" +SLOT="0" +IUSE="qt" +KEYWORDS="~amd64 ~x86" + +DEPEND="qt? ( x11-libs/qt-core:4 )" +RDEPEND="${DEPEND} + dev-perl/DBI + dev-perl/Statistics-Descriptive + sci-biology/mummer" + +src_compile() { + emake -j1 || die "emake failed" +} + +src_install() { + emake DESTDIR="${D}" install || die "emake install failed" +} diff --git a/sci-biology/amos/metadata.xml b/sci-biology/amos/metadata.xml index 3302123e5718..f9defa6e6fcd 100644 --- a/sci-biology/amos/metadata.xml +++ b/sci-biology/amos/metadata.xml @@ -6,4 +6,7 @@ Andrey Kislyuk sci-biology + + Compile the hawkeye assembly viewer + -- 2.26.2