From 5c2ac71e10c036a97d4c4a5c20601b8b773ab0df Mon Sep 17 00:00:00 2001 From: Justin Lecher Date: Mon, 29 Aug 2011 15:28:43 +0000 Subject: [PATCH] Version Bump sci-chemistry/aria-2.3.2, 379153 Package-Manager: portage-2.2.0_alpha51/cvs/Linux x86_64 --- sci-chemistry/aria/ChangeLog | 10 +++- sci-chemistry/aria/Manifest | 18 +++--- sci-chemistry/aria/aria-2.3.1.ebuild | 11 ++-- sci-chemistry/aria/aria-2.3.2.ebuild | 88 ++++++++++++++++++++++++++++ sci-chemistry/aria/metadata.xml | 8 +-- 5 files changed, 116 insertions(+), 19 deletions(-) create mode 100644 sci-chemistry/aria/aria-2.3.2.ebuild diff --git a/sci-chemistry/aria/ChangeLog b/sci-chemistry/aria/ChangeLog index fb4a32b09d3c..f1c3eadf41f3 100644 --- a/sci-chemistry/aria/ChangeLog +++ b/sci-chemistry/aria/ChangeLog @@ -1,6 +1,12 @@ # ChangeLog for sci-chemistry/aria -# Copyright 1999-2010 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/aria/ChangeLog,v 1.7 2010/11/18 17:10:04 jlec Exp $ +# Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/aria/ChangeLog,v 1.8 2011/08/29 15:28:43 jlec Exp $ + +*aria-2.3.2 (29 Aug 2011) + + 29 Aug 2011; Justin Lecher aria-2.3.1.ebuild, + +aria-2.3.2.ebuild, metadata.xml: + Version Bump sci-chemistry/aria-2.3.2, 379153 18 Nov 2010; Justin Lecher -files/2.2_p2-numpy.patch, -files/2.2_p2-test.patch, -files/sa_ls_cool2.patch, -aria-2.2_p2.ebuild: diff --git a/sci-chemistry/aria/Manifest b/sci-chemistry/aria/Manifest index c4432d135608..e78710569f5a 100644 --- a/sci-chemistry/aria/Manifest +++ b/sci-chemistry/aria/Manifest @@ -1,14 +1,16 @@ -----BEGIN PGP SIGNED MESSAGE----- -Hash: SHA1 +Hash: SHA512 DIST aria2.3.1.tar.gz 1833973 RMD160 f2ee0bfc7e3164b5c34c81abb74256c5d76f53d7 SHA1 b257094bdaf6ba5b64645b8251d9243654e6d0fc SHA256 cc45ed2d66182cf0ee197a7cf3bc7edd8d5043d95cdcd19e1cec9aeb82c2fdbc -EBUILD aria-2.3.1.ebuild 2037 RMD160 e1490118f42cc833f018a6e7653afd2ea7b057e2 SHA1 999e6749c399601b443cb60c914ae6ae06de7fbe SHA256 81e57e81e06114cca000563c40f4f25430fcd6d4e2ed98589dc1a99681fe326d -MISC ChangeLog 1073 RMD160 50d0f1fad7bc86e686924331cfff2709b5ad2295 SHA1 61ee3fddca23c37bfd61e1204b4bce05c6d1360e SHA256 3a93b41575f8b2c235d10b3543559ffbb4e664ba1b415dfd90caa3944219c7e4 -MISC metadata.xml 216 RMD160 04a6fc4e2160b439296b52aa97d5b7d83af75508 SHA1 9561c9e6eada6aac9b503407917900529ce703e9 SHA256 24f5c205c2655ef27138c8aa087701626f5b4c666229c9ef7fe814e63ea2e776 +DIST aria2.3.2.tar.gz 1836270 RMD160 cd96f19c7a229694d561824dcca9ee22845c6a4f SHA1 74fc1cb6640b2a3f97851ac88042023f1a9c07ce SHA256 30727ea8bdc2e3b44e5970545008fcfa07fa59aa28b76824956a2aa71daa9615 +EBUILD aria-2.3.1.ebuild 2022 RMD160 e176a7b25c8d06287c91bb2c4d97f0d160dcc6d5 SHA1 28677a59f666d2ec9173ae86cfac37bc4a76f719 SHA256 0a83e234e39fbff3ffa65f21df768b7e0fea23ac13ad17008ab72e6103e3c96d +EBUILD aria-2.3.2.ebuild 2022 RMD160 cd4b143087256e7e3f70f74f21d0638222bab866 SHA1 c3e2775845d0c1f869e5fb67cb0615585474c784 SHA256 696304d2e14b5f89924a4b14b1b015167ed6b73ae096a30b9aba38b9a7385efd +MISC ChangeLog 1251 RMD160 56dec14841a19f9eb5a9556797f2bb1527d8d0c6 SHA1 cda64c5e01d4d6c9f8bf861dacb24dd006032bfa SHA256 a18d7bed660ba5775570608d9868bf4471754360c530e865ba9597c69056885d +MISC metadata.xml 219 RMD160 e9da2d4271f89b9dbac478d145a519318f0f3314 SHA1 6d4a101013d6a40cd61cb2d8c6b517c443013bc7 SHA256 0be94b46df4c9a73494034f33b1371769951f52890e5c857ebe1dc9bc729d0a8 -----BEGIN PGP SIGNATURE----- -Version: GnuPG v2.0.16 (GNU/Linux) +Version: GnuPG v2.0.18 (GNU/Linux) -iEYEARECAAYFAkzlXfEACgkQgAnW8HDreRaFAwCgk1kctwtZnASz95sN6rUqASWw -8HEAoMk9JGfUIBKGrXALL6QzYAh4Mwzw -=pD3y +iEYEAREKAAYFAk5bsDEACgkQgAnW8HDreRbXKgCeNhOaWp/VIi/NKevnDRAIGW3n +DpkAn3JhQLEWfYmwF3/ZJEXJZNTx7UsA +=0oFQ -----END PGP SIGNATURE----- diff --git a/sci-chemistry/aria/aria-2.3.1.ebuild b/sci-chemistry/aria/aria-2.3.1.ebuild index 8139857b752e..f7f9b9af39dc 100644 --- a/sci-chemistry/aria/aria-2.3.1.ebuild +++ b/sci-chemistry/aria/aria-2.3.1.ebuild @@ -1,16 +1,17 @@ -# Copyright 1999-2010 Gentoo Foundation +# Copyright 1999-2011 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 -# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/aria/aria-2.3.1.ebuild,v 1.4 2010/07/22 07:08:44 jlec Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/aria/aria-2.3.1.ebuild,v 1.5 2011/08/29 15:28:43 jlec Exp $ + +EAPI=3 -EAPI="3" PYTHON_DEPEND="2" PYTHON_USE_WITH="tk" -inherit base python eutils versionator +inherit base eutils python versionator MY_P="${PN}$(get_version_component_range 1-2 ${PV})" -DESCRIPTION="Software for automated NOE assignment and NMR structure calculation." +DESCRIPTION="Automated NOE assignment and NMR structure calculation" HOMEPAGE="http://aria.pasteur.fr/" SRC_URI="http://aria.pasteur.fr/archives/${MY_P}.1.tar.gz" diff --git a/sci-chemistry/aria/aria-2.3.2.ebuild b/sci-chemistry/aria/aria-2.3.2.ebuild new file mode 100644 index 000000000000..ab4ea1ec32d3 --- /dev/null +++ b/sci-chemistry/aria/aria-2.3.2.ebuild @@ -0,0 +1,88 @@ +# Copyright 1999-2011 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/aria/aria-2.3.2.ebuild,v 1.1 2011/08/29 15:28:43 jlec Exp $ + +EAPI=3 + +PYTHON_DEPEND="2" +PYTHON_USE_WITH="tk" + +inherit base eutils python versionator + +MY_P="${PN}$(get_version_component_range 1-2 ${PV})" + +DESCRIPTION="Automated NOE assignment and NMR structure calculation" +HOMEPAGE="http://aria.pasteur.fr/" +SRC_URI="http://aria.pasteur.fr/archives/${MY_P}.2.tar.gz" + +SLOT="0" +LICENSE="cns" +KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" +IUSE="examples" + +RDEPEND=" + sci-chemistry/clashlist + sci-chemistry/procheck + sci-libs/clashscore-db + dev-python/numpy + dev-python/matplotlib[tk] + >=sci-chemistry/cns-1.2.1-r3[aria,openmp] + >=dev-lang/tk-8.3 + >=sci-chemistry/ccpn-2.0.5 + >=dev-tcltk/tix-8.1.4" +DEPEND="${RDEPEND}" + +RESTRICT="fetch" + +S="${WORKDIR}/${MY_P}" + +pkg_nofetch(){ + einfo "Go to ${HOMEPAGE}, download ${A}" + einfo "and place it in ${DISTDIR}" +} + +src_test(){ + export CCPNMR_TOP_DIR="${EPREFIX}"/$(python_get_sitedir) + export PYTHONPATH=.:${CCPNMR_TOP_DIR}/ccpn/python + $(PYTHON) check.py || die +} + +src_install(){ + insinto "$(python_get_sitedir)/${PN}" + doins -r src aria2.py || die "failed to install ${PN}" + insinto "$(python_get_sitedir)/${PN}"/cns + doins -r cns/{protocols,toppar,src/helplib} || die "failed to install cns part" + + if use examples; then + insinto /usr/share/${P}/ + doins -r examples || die + fi + + # ENV + cat >> "${T}"/20aria <<- EOF + ARIA2="${EPREFIX}/$(python_get_sitedir)/${PN}" + EOF + + doenvd "${T}"/20aria + + # Launch Wrapper + cat >> "${T}"/aria <<- EOF + #!/bin/sh + export CCPNMR_TOP_DIR="${EPREFIX}/$(python_get_sitedir)" + export PYTHONPATH="${EPREFIX}/$(python_get_sitedir)/ccpn/python" + exec "$(PYTHON)" -O "\${ARIA2}"/aria2.py \$@ + EOF + + dobin "${T}"/aria || die "failed to install wrapper" + dosym aria /usr/bin/aria2 + + dodoc README || die +} + +pkg_postinst() { + python_mod_optimize ${PN} +} + +pkg_postrm() { + python_mod_cleanup ${PN} +} diff --git a/sci-chemistry/aria/metadata.xml b/sci-chemistry/aria/metadata.xml index c6856dc7f2cf..210ad0db014c 100644 --- a/sci-chemistry/aria/metadata.xml +++ b/sci-chemistry/aria/metadata.xml @@ -1,8 +1,8 @@ -sci - - jlec@gentoo.org - + sci + + jlec@gentoo.org + -- 2.26.2