From 43ec20457f931039230784be90893ef70f4a2f3c Mon Sep 17 00:00:00 2001 From: David Seifert Date: Mon, 3 Oct 2016 22:16:56 +0200 Subject: [PATCH] sci-biology/tophat: Do not wrap scripts Package-Manager: portage-2.3.1 --- .../tophat/{tophat-2.1.1-r2.ebuild => tophat-2.1.1-r3.ebuild} | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) rename sci-biology/tophat/{tophat-2.1.1-r2.ebuild => tophat-2.1.1-r3.ebuild} (95%) diff --git a/sci-biology/tophat/tophat-2.1.1-r2.ebuild b/sci-biology/tophat/tophat-2.1.1-r3.ebuild similarity index 95% rename from sci-biology/tophat/tophat-2.1.1-r2.ebuild rename to sci-biology/tophat/tophat-2.1.1-r3.ebuild index 52a75a6d5964..4d784fa9bfb9 100644 --- a/sci-biology/tophat/tophat-2.1.1-r2.ebuild +++ b/sci-biology/tophat/tophat-2.1.1-r3.ebuild @@ -6,7 +6,7 @@ EAPI=6 PYTHON_COMPAT=( python2_7 ) -inherit autotools eutils flag-o-matic python-single-r1 toolchain-funcs +inherit autotools flag-o-matic python-single-r1 toolchain-funcs DESCRIPTION="Python-based splice junction mapper for RNA-Seq reads using bowtie2" HOMEPAGE="https://ccb.jhu.edu/software/tophat/" @@ -70,7 +70,7 @@ src_install() { local i # install scripts properly for i in bed_to_juncs contig_to_chr_coords sra_to_solid tophat tophat-fusion-post; do - python_doscript "${ED%/}/usr/bin/${i}" + python_fix_shebang "${ED%/}/usr/bin/${i}" done # install python modules properly -- 2.26.2