From: Justin Lecher <jlec@gentoo.org>
Date: Mon, 12 Oct 2015 08:02:30 +0000 (+0200)
Subject: sci-chemistry/prody: New Package
X-Git-Url: http://git.tremily.us/gitweb.cgi?a=commitdiff_plain;h=6be64841077924e592e49be11bc2c62672c38bd5;p=gentoo.git

sci-chemistry/prody: New Package

ebuild written by me

Package-Manager: portage-2.2.22
Signed-off-by: Justin Lecher <jlec@gentoo.org>
---

diff --git a/sci-chemistry/prody/Manifest b/sci-chemistry/prody/Manifest
new file mode 100644
index 000000000000..df88491d4cbf
--- /dev/null
+++ b/sci-chemistry/prody/Manifest
@@ -0,0 +1 @@
+DIST prody-1.6.tar.gz 5333629 SHA256 db5f2223005640e64b5bfd5ef147744381b9b170ced61db7bc8f3a0fdb583c86 SHA512 d913ad45b034f1b0e7e36428a6f8f199b365b94bd85bee5ade8eb9eb2b04a18c93d894a2abd18b3a1342597725ffbf96f8ce8a49191fc27e5608f3d2c9a3c49a WHIRLPOOL a6435d88046970cca53290b258017d09b19457c4bbd5530743a3dc9cbc023ee78a28a4df81b190a5499df114d9909afff0697e571ef5bc4726311f4ea287c4be
diff --git a/sci-chemistry/prody/metadata.xml b/sci-chemistry/prody/metadata.xml
new file mode 100644
index 000000000000..ae9ec7c5f6a4
--- /dev/null
+++ b/sci-chemistry/prody/metadata.xml
@@ -0,0 +1,8 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+  <herd>sci-chemistry</herd>
+  <maintainer>
+    <email>jlec@gentoo.org</email>
+  </maintainer>
+</pkgmetadata>
diff --git a/sci-chemistry/prody/prody-1.6.ebuild b/sci-chemistry/prody/prody-1.6.ebuild
new file mode 100644
index 000000000000..a2ece4dfd984
--- /dev/null
+++ b/sci-chemistry/prody/prody-1.6.ebuild
@@ -0,0 +1,44 @@
+# Copyright 1999-2015 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Id$
+
+EAPI=5
+
+PYTHON_COMPAT=( python2_7 )
+
+inherit distutils-r1
+
+DESCRIPTION="Protein Dynamics Analysis"
+HOMEPAGE="http://prody.csb.pitt.edu/ https://github.com/prody/ProDy"
+SRC_URI="https://github.com/prody/ProDy/archive/v${PV}.tar.gz -> ${P}.tar.gz"
+
+SLOT="0"
+LICENSE="MIT"
+KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
+IUSE="test"
+
+RDEPEND="
+	dev-python/ipython[${PYTHON_USEDEP}]
+	dev-python/matplotlib[${PYTHON_USEDEP}]
+	>=dev-python/numpy-1.7[${PYTHON_USEDEP}]
+	dev-python/pyparsing[${PYTHON_USEDEP}]
+	sci-biology/biopython[${PYTHON_USEDEP}]
+	sci-libs/scipy[${PYTHON_USEDEP}]
+"
+DEPEND="${RDEPEND}
+	test? ( dev-python/nose[${PYTHON_USEDEP}] )"
+
+S="${WORKDIR}"/ProDy-${PV}
+
+DISTUTILS_IN_SOURCE_BUILD=true
+
+python_prepare_all() {
+	emake remove
+	distutils-r1_python_prepare_all
+}
+
+python_test() {
+	cd "${BUILD_DIR}" || die
+	PATH="${S}"/scripts:${PATH} \
+		nosetests --verbose || die
+}