From: Justin Lecher <jlec@gentoo.org>
Date: Thu, 6 Oct 2011 12:59:24 +0000 (+0000)
Subject: Respect CFLAGS, #384369
X-Git-Url: http://git.tremily.us/gitweb.cgi?a=commitdiff_plain;h=50f3df6097ed2b6e5310bb6db70f46c68436ec56;p=gentoo.git

Respect CFLAGS, #384369

Package-Manager: portage-2.2.0_alpha60/cvs/Linux x86_64
---

diff --git a/sci-biology/bfast/ChangeLog b/sci-biology/bfast/ChangeLog
index 62f742106dd7..0032348fde5d 100644
--- a/sci-biology/bfast/ChangeLog
+++ b/sci-biology/bfast/ChangeLog
@@ -1,6 +1,11 @@
 # ChangeLog for sci-biology/bfast
 # Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/bfast/ChangeLog,v 1.5 2011/07/15 15:38:43 xarthisius Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/bfast/ChangeLog,v 1.6 2011/10/06 12:59:24 jlec Exp $
+
+*bfast-0.6.5a-r1 (06 Oct 2011)
+
+  06 Oct 2011; Justin Lecher <jlec@gentoo.org> +bfast-0.6.5a-r1.ebuild:
+  Respect CFLAGS, #384369
 
   15 Jul 2011; Kacper Kowalik <xarthisius@gentoo.org> -bfast-0.6.4c.ebuild,
   -bfast-0.6.4d.ebuild:
diff --git a/sci-biology/bfast/Manifest b/sci-biology/bfast/Manifest
index b24aec632e3b..41d85b261e42 100644
--- a/sci-biology/bfast/Manifest
+++ b/sci-biology/bfast/Manifest
@@ -1,16 +1,15 @@
 -----BEGIN PGP SIGNED MESSAGE-----
-Hash: SHA1
+Hash: SHA512
 
 DIST bfast-0.6.5a.tar.gz 2456833 RMD160 05d06932e6dab6d627dceb0a8a72ad8055af14b9 SHA1 021b7ee8c12e88574ae6e943690a06237169c16e SHA256 5dbcb6216f45097a21abaa5c8bbbc6f5206f3b6263f43b2f1bb719604e76629b
+EBUILD bfast-0.6.5a-r1.ebuild 801 RMD160 d6f7846f51bb67cc625f3ef11d747a2dd23a7fc4 SHA1 8fe805bf60d0d5081f32bcf4869954610192ca83 SHA256 9366300b090aa33db65e40ae04391a6223725c455f64828eb1522f0db293a716
 EBUILD bfast-0.6.5a.ebuild 788 RMD160 86525854802645725414c642b37ebe857f4f1233 SHA1 7a7e3aab31fa079a1384c04d3528a243bee4e80d SHA256 88011bcea99f58c35d39785b551f76bff8d47d26fdb3c5758610bb1911a5ab0b
-MISC ChangeLog 1078 RMD160 ae58c1b5c77f9e4c2d915042111300b01643ad21 SHA1 63e8ff13dccdd9747cabfa568b183bd461217a3c SHA256 03e8122ca25076a831b8d2e7c40647a6ffd3284cd96f10d85ae78d8f01b740a2
+MISC ChangeLog 1203 RMD160 f7df9518eb9dbca2afaf28dee3d84fdefd2b577e SHA1 e07e82bcea4e0ade2199d7b5ac67381d655366da SHA256 baac4c9d28cc00141883c773e5f930bb3c9e5f388e5c306eee4400bd59ae5f06
 MISC metadata.xml 259 RMD160 d9d81b67d635fabd81aef8ae0edf971211ae9072 SHA1 8e32f751c67ff891fa35405a2cf6fb33752d6eb1 SHA256 541c3fbcf299d9a8ccf4132ee61f9e53a5d737cefdaa6fdc77764d8d4c7f3110
 -----BEGIN PGP SIGNATURE-----
-Version: GnuPG v2.0.17 (GNU/Linux)
+Version: GnuPG v2.0.18 (GNU/Linux)
 
-iJwEAQECAAYFAk4gXwsACgkQIiMqcbOVdxSH8wQAjRl9o9X1Sw847k5GD+kHnUbP
-3CLfEfDW3zkE4nZYeEGwGVtNbghbogJGHmQhHMwhg/EnH+fGLs5Ep0jsfSoDlFJU
-JeNM/jjS9bpzH56A9thTGa1o2CIV8T3etfv3ohJjTj9RwX+h05mdcS9Q0rgnPBCP
-MMU5lJoxJK1g/BIoYuI=
-=bAxP
+iEYEAREKAAYFAk6NpjEACgkQgAnW8HDreRa99gCeKnxqFrpL1lZOFpHh2m4E5dLI
+EmMAn3VsmRXG5mnt+tqznXr3M4sTQ/LP
+=4jsR
 -----END PGP SIGNATURE-----
diff --git a/sci-biology/bfast/bfast-0.6.5a-r1.ebuild b/sci-biology/bfast/bfast-0.6.5a-r1.ebuild
new file mode 100644
index 000000000000..a8abd53d3aa2
--- /dev/null
+++ b/sci-biology/bfast/bfast-0.6.5a-r1.ebuild
@@ -0,0 +1,31 @@
+# Copyright 1999-2011 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/bfast/bfast-0.6.5a-r1.ebuild,v 1.1 2011/10/06 12:59:24 jlec Exp $
+
+EAPI=4
+
+inherit autotools
+
+DESCRIPTION="Blat-like Fast Accurate Search Tool"
+HOMEPAGE="https://sourceforge.net/projects/bfast/"
+SRC_URI="mirror://sourceforge/${PN}/${P}.tar.gz"
+
+LICENSE="GPL-2"
+SLOT="0"
+IUSE=""
+KEYWORDS="~amd64 ~x86"
+
+DEPEND=""
+RDEPEND="dev-perl/XML-Simple"
+
+src_prepare() {
+	sed \
+		-e 's/-m64//' \
+		-e 's/CFLAGS="${default_CFLAGS} ${extended_CFLAGS}"/CFLAGS="${CFLAGS} ${default_CFLAGS} ${extended_CFLAGS}"/' \
+		-e 's:-g -O2::g' \
+		-i configure.ac || die
+	sed \
+		-e 's:. test.definitions.sh:. ./test.definitions.sh:g' \
+		-i tests/*sh || die
+	eautoreconf
+}