From: Pacho Ramos Date: Sun, 26 Apr 2015 12:51:36 +0000 (+0000) Subject: Remove masked for removal package X-Git-Url: http://git.tremily.us/gitweb.cgi?a=commitdiff_plain;h=4ce00f3e512bce86ddc3705dd2dbaf64c0552750;p=gentoo.git Remove masked for removal package --- diff --git a/sci-chemistry/webmo/ChangeLog b/sci-chemistry/webmo/ChangeLog deleted file mode 100644 index f858d9a3922d..000000000000 --- a/sci-chemistry/webmo/ChangeLog +++ /dev/null @@ -1,104 +0,0 @@ -# ChangeLog for sci-chemistry/webmo -# Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/webmo/ChangeLog,v 1.19 2011/06/27 05:30:11 jlec Exp $ - - 27 Jun 2011; Justin Lecher webmo-6.1.010.ebuild, - webmo-7.0.003.ebuild, webmo-8.0.010.ebuild: - Added fetch restriction and dropped keywords - - 25 Jun 2011; Justin Lecher webmo-6.1.010.ebuild, - webmo-7.0.003.ebuild, webmo-8.0.010.ebuild, metadata.xml: - define RDEPEND - - 29 May 2009; Donnie Berkholz ; webmo-8.0.010.ebuild: - Keyword ~amd64. - - 26 May 2009; Arfrever Frehtes Taifersar Arahesis - webmo-6.1.010.ebuild, webmo-7.0.003.ebuild, webmo-8.0.010.ebuild: - Add pkg_setup(). - -*webmo-8.0.010 (15 Feb 2008) - - 15 Feb 2008; Donnie Berkholz ; - +files/8.0.010-add-gamess-data-directory.patch, - +files/8.0.010-gentoo-locations.patch, +webmo-8.0.010.ebuild: - Bump. - - 05 Feb 2008; Benedikt Böhm webmo-6.1.010.ebuild, - webmo-7.0.003.ebuild: - merge from webapps overlay wrt #208584 - - 03 Feb 2008; Jakub Moc webmo-6.1.010.ebuild, - webmo-7.0.003.ebuild: - Fix apache dependencies wrt Bug 208584; fix quoting, einfo -> elog - - 29 Jul 2007; Christian Heim webmo-6.1.010.ebuild, - webmo-7.0.003.ebuild: - Fixing the DEPEND/RDEPEND for the move of net-www/apache to - www-servers/apache (#78622). - -*webmo-7.0.003 (08 May 2007) - - 08 May 2007; Donnie Berkholz ; - +files/7.0.003-gentoo-locations.patch, +webmo-7.0.003.ebuild: - New features in WebMO version 7.0 include: - * Improved molecular mechanics for generating initial geometries - * Improved Editor clean-up for charged species and/or octet rule exceptions - * Automatic diagnosis and reporting of common causes of job failure - * JPEG image capture of molecular and spectral images - * Database storage of jobs and users for improved performance and scalability - * New administrative interface - * Many user interface enhancements and bug fixes - - 20 Sep 2006; Donnie Berkholz ; metadata.xml: - (#148281) Change herd to sci-chemistry from sci. - - 05 Aug 2006; Donnie Berkholz ; metadata.xml: - Remove myself as maintainer, anyone feel free to work on this, although I'll - continue to do so as well. - - 07 Jul 2006; Donnie Berkholz ; metadata.xml: - Update to my new email address. - - 20 Jun 2006; Donnie Berkholz ; webmo-6.1.010.ebuild: - Add a warning about overwriting info with etc-update. - - 20 Jun 2006; Donnie Berkholz ; - -webmo-6.0.003.ebuild: - Pull old version. - -*webmo-6.1.010 (20 Jun 2006) - - 20 Jun 2006; Donnie Berkholz ; files/reconfig, - +webmo-6.1.010.ebuild: - Bump. Significant enhancements to reconfig script to handle webapp-config - upgrades properly via etc-update. - - 23 Feb 2006; Donnie Berkholz ; webmo-6.0.003.ebuild: - Remove redundant src_compile(), reported by ciaranm. - - 04 Dec 2005; Donnie Berkholz ; files/reconfig: - Don't overwrite the actual .int file, copy into ._cfg* for etc-update. - - 04 Dec 2005; Donnie Berkholz ; +files/reconfig: - Add hook script, to be run when installing to live host. - - 04 Dec 2005; Donnie Berkholz ; - -files/dont-be-interactive-if-root.patch, - +files/dont-be-interactive-or-diagnose.patch, - -files/dont-check-unneeded-things.patch, webmo-6.0.003.ebuild: - Turn 2 patches into a single one with 4 lines of changes. - -*webmo-6.0.003 (04 Dec 2005) - - 04 Dec 2005; Donnie Berkholz ; - +files/add-gamess-data-directory.patch, - +files/dont-be-interactive-if-root.patch, - +files/dont-check-unneeded-things.patch, +files/gentoo-locations.patch, - +metadata.xml, +webmo-6.0.003.ebuild: - Add a Web interface to a number of computational chemistry programs. Ones in - portage include mopac7, gamess and tinker. Also works for Gaussian, NWChem, - QChem, Molpro, etc. What needs work: reinstallations without screwing the - old configuration, and the reconfig script so editing globals.int isn't - required. - diff --git a/sci-chemistry/webmo/Manifest b/sci-chemistry/webmo/Manifest deleted file mode 100644 index 775e12291238..000000000000 --- a/sci-chemistry/webmo/Manifest +++ /dev/null @@ -1,25 +0,0 @@ ------BEGIN PGP SIGNED MESSAGE----- -Hash: SHA1 - -AUX 7.0.003-gentoo-locations.patch 1936 RMD160 32aa3271b88c1404f9bc14c3abd43f571d3e6e66 SHA1 7e2b58918c714dc557685387c6f1e5f6cfce3815 SHA256 a6511aa4a2dbc065959b67e994077bdb218a347b55be436c09f2798a4b2b0a99 -AUX 8.0.010-add-gamess-data-directory.patch 2065 RMD160 1813b24d57578060d0873db6e7386b09a6bde88f SHA1 de551f8abc876583f4f31b22b43f873d51bb408d SHA256 293c86358a7ce67382f4f97282514314d70aae8970c8db178bb2815f53f912e0 -AUX 8.0.010-gentoo-locations.patch 1887 RMD160 acd821e96e724680e7189b3b9b64749e7d2d099b SHA1 93d7162da63e4b7196c7e76cc081a6c22ff48a61 SHA256 83865bebb0f407838d1f10771a8dee7887bbe0eb87c0199e6f97514a55227715 -AUX add-gamess-data-directory.patch 2112 RMD160 1cb6afe72d077b8e53c958276da054e581dffb80 SHA1 4b1d0fa9a2e38e1644969eed0d727fed6c03be2a SHA256 3f22a700679e762296593816a6ddac3fe048a069921dd890176b0a5863b0323d -AUX dont-be-interactive-or-diagnose.patch 806 RMD160 f583bd3515fdd6388a842aa0ef6afc798bfbdf7b SHA1 9bb7e090322010b66a0314da80283b70f8e1af24 SHA256 0564216929993ff7180486da3b9166a829eb111a90d83b46f1a70099f67c2774 -AUX gentoo-locations.patch 1939 RMD160 c9f38a643ac722a05cd4287b1124f192b8524c35 SHA1 316655a00f562b8104482da71454b1a9a60f42ab SHA256 cc4604c3f520a4b6914f3f44a4971a761c3e96a1ae0c8941d6f956ab97aaba01 -AUX reconfig 1957 RMD160 68c3eac15df2acebdeeb9dd82938e5a3d5bc1aa9 SHA1 370883684b76277b409739819b22c3056fcf4130 SHA256 86faf48c67355367ca6d68a1b1e992602b760857b50ced0f2be78a9da9395ba5 -DIST WebMO.6.1.010.tar.gz 1221074 RMD160 2ed4385229b3c094891cc31131ca0f313eba59e5 SHA1 63440398ddb3daf591fa260a30204519889a7ab0 SHA256 99f53a346b32ee7b9ec9c0c7a4368b5c3e744e8dd960e57a776867558e35ec7b -DIST WebMO.7.0.003.tar.gz 1491250 RMD160 42a73223370ad5e6e5b0baca95c9b3a1b01a8a09 SHA1 63f125d118610a9e40cea8fa14200675d5be1c6a SHA256 41018522a78f752bf07ad4ae6798c9eac0d678aba7d1f71f7c6dd5c4f00b2435 -DIST WebMO.8.0.010.tar.gz 1350339 RMD160 8a266c3f718e8e67bac237703e0e53380f8c010c SHA1 e6987b67a9d5316cb92e4a712e8620a78eb349ad SHA256 e410bb63e07ecc34bd0ee3d0325055e730902dd09bb28c2e9469fafbfa2c0071 -EBUILD webmo-6.1.010.ebuild 3494 RMD160 326775e6ebe498756e4956d1e11b0085adac71fb SHA1 834b1f5dc3961d09ba31501878c2fe0944465a1c SHA256 72cefd565973544fef014185fee36ee29668a7f4e844bc0e19dade0debd9f909 -EBUILD webmo-7.0.003.ebuild 3500 RMD160 fda0e3291a517c7fbbbf3f8ff87f566befbf797f SHA1 cfc55629b9c9a82dd54269842b00c1d6ccda9c18 SHA256 813619040f015d2db1b08a89d7f8e0e7547e1e18824d94fd9627b8ff46036e38 -EBUILD webmo-8.0.010.ebuild 3510 RMD160 060614ef5706db7862034a9f18591a0717749007 SHA1 fd3ec7c871874ab3174f5bce0335b58c66a33bda SHA256 4d8e0752ff8464c082adef5efd0dd7e69021d1ca181b48f078df5c0a044d66c8 -MISC ChangeLog 4282 RMD160 d731d514a55bac88c63845c6ff16b0ffc1f34772 SHA1 89c649606bdf54bb56a57ae8a148b66a136d2700 SHA256 4bdfdd47fdcd9335690ab5343d9dbcde8af971c6a29a0e0dcc96d63309abccd9 -MISC metadata.xml 167 RMD160 ea4003a55d6e2079381a540c441fc59cde29025a SHA1 3bc6dc4dd68f7de22828138e62aa117387b1765d SHA256 f313eeec4ebffac500b57a98a225e32c77489fc826a50494749b6cdeec28e3e8 ------BEGIN PGP SIGNATURE----- -Version: GnuPG v2.0.17 (GNU/Linux) - -iEYEARECAAYFAk4IFWgACgkQgAnW8HDreRYtlwCeMcg3IJEpaPZm7hr/jU5GLoO4 -rnMAnRdIsNbKWz9HF+ThTY4dtWojcDEC -=GpxT ------END PGP SIGNATURE----- diff --git a/sci-chemistry/webmo/files/7.0.003-gentoo-locations.patch b/sci-chemistry/webmo/files/7.0.003-gentoo-locations.patch deleted file mode 100644 index 1190c648a677..000000000000 --- a/sci-chemistry/webmo/files/7.0.003-gentoo-locations.patch +++ /dev/null @@ -1,42 +0,0 @@ -diff -urN WebMO.install.orig/cgi-bin/interfaces/gamess.int.disabled WebMO.install/cgi-bin/interfaces/gamess.int.disabled ---- WebMO.install.orig/cgi-bin/interfaces/gamess.int.disabled 2007-05-07 23:31:24.000000000 -0700 -+++ WebMO.install/cgi-bin/interfaces/gamess.int.disabled 2007-05-07 23:32:19.000000000 -0700 -@@ -2,7 +2,7 @@ - interfaceDescription{'gamess_admin'}="Edit preferences specific to Gamess" - interfaceDescription{'gamess_name'}="Gamess" - gamessVersion="2006" --gamessGMSPATH="/usr/local/gamess" -+gamessGMSPATH="/usr/bin" - gamessBinary="gamess.00.x" - gamessDdikick="ddikick.x" - cpuMin="0" -diff -urN WebMO.install.orig/cgi-bin/interfaces/mopac.int.disabled WebMO.install/cgi-bin/interfaces/mopac.int.disabled ---- WebMO.install.orig/cgi-bin/interfaces/mopac.int.disabled 2007-05-07 23:31:24.000000000 -0700 -+++ WebMO.install/cgi-bin/interfaces/mopac.int.disabled 2007-05-07 23:31:43.000000000 -0700 -@@ -2,8 +2,8 @@ - interfaceDescription{'mopac_admin'}="Edit preferences specific to Mopac" - interfaceDescription{'mopac_name'}="Mopac" - mopacVersion="7" --mopacPath="/usr/local/mopac7/mopac.exe" --mopacScratch="/scratch" -+mopacPath="/usr/bin/mopac7" -+mopacScratch="/tmp" - mopacExternal="/usr/local/mopac7" - cpuMin="0" - cpuMax="100" -diff -urN WebMO.install.orig/cgi-bin/interfaces/tinker.int.disabled WebMO.install/cgi-bin/interfaces/tinker.int.disabled ---- WebMO.install.orig/cgi-bin/interfaces/tinker.int.disabled 2007-05-07 23:31:24.000000000 -0700 -+++ WebMO.install/cgi-bin/interfaces/tinker.int.disabled 2007-05-07 23:31:43.000000000 -0700 -@@ -2,9 +2,9 @@ - interfaceDescription{'tinker_admin'}="Edit preferences specific to Tinker" - interfaceDescription{'tinker_name'}="Tinker" - tinkerVersion="4.2" --tinkerBinDir="/usr/local/tinker/bin" --tinkerBinExt="x" --tinkerParamDir="/usr/local/tinker/params" -+tinkerBinDir="/usr/bin" -+tinkerBinExt="" -+tinkerParamDir="/usr/share/tinker/params" - cpuMin="0" - cpuMax="100" - cpuDefault="100" diff --git a/sci-chemistry/webmo/files/8.0.010-add-gamess-data-directory.patch b/sci-chemistry/webmo/files/8.0.010-add-gamess-data-directory.patch deleted file mode 100644 index 67447d6059ba..000000000000 --- a/sci-chemistry/webmo/files/8.0.010-add-gamess-data-directory.patch +++ /dev/null @@ -1,42 +0,0 @@ -diff -ur WebMO.install.orig/cgi-bin/interfaces/gamess.int.disabled WebMO.install/cgi-bin/interfaces/gamess.int.disabled ---- WebMO.install.orig/cgi-bin/interfaces/gamess.int.disabled 2008-02-15 00:37:31.000000000 -0800 -+++ WebMO.install/cgi-bin/interfaces/gamess.int.disabled 2008-02-15 00:37:56.000000000 -0800 -@@ -3,6 +3,7 @@ - interfaceDescription{'gamess_name'}="Gamess" - gamessVersion="2007" - gamessGMSPATH="/usr/bin" -+gamessDATAPATH="/usr/share/gamess/ericfmt" - gamessBinary="gamess.00.x" - gamessDdikick="ddikick.x" - cpuMin="0" -diff -ur WebMO.install.orig/cgi-bin/run_gamess.cgi WebMO.install/cgi-bin/run_gamess.cgi ---- WebMO.install.orig/cgi-bin/run_gamess.cgi 2008-02-15 00:37:31.000000000 -0800 -+++ WebMO.install/cgi-bin/run_gamess.cgi 2008-02-15 00:38:12.000000000 -0800 -@@ -30,7 +30,7 @@ - $ENV{'IRCDATA'} = $output_file.".irc"; - $ENV{'PUNCH'} = $output_file.".dat"; - $ENV{'INPUT'} = "$input_file.inp"; --$ENV{'ERICFMT'} = "$gamessGMSPATH/ericfmt.dat"; -+$ENV{'ERICFMT'} = "$gamessDATAPATH/ericfmt.dat"; - $ENV{'PATH'} = $ENV{'PATH'}.":".$gamessGMSPATH; - $ENV{'DDI_RSH'}=$serverShell; - -diff -ur WebMO.install.orig/source/gamessmgr_admin.html WebMO.install/source/gamessmgr_admin.html ---- WebMO.install.orig/source/gamessmgr_admin.html 2008-02-15 00:37:31.000000000 -0800 -+++ WebMO.install/source/gamessmgr_admin.html 2008-02-15 00:38:57.000000000 -0800 -@@ -30,10 +30,14 @@ - - - -- GAMESS directory -+ GAMESS binary directory - - - -+ GAMESS data directory -+ -+ -+ - GAMESS binary (name, not path) - - diff --git a/sci-chemistry/webmo/files/8.0.010-gentoo-locations.patch b/sci-chemistry/webmo/files/8.0.010-gentoo-locations.patch deleted file mode 100644 index 5c13919b8e1f..000000000000 --- a/sci-chemistry/webmo/files/8.0.010-gentoo-locations.patch +++ /dev/null @@ -1,40 +0,0 @@ -diff -ur WebMO.install.orig/cgi-bin/interfaces/gamess.int.disabled WebMO.install/cgi-bin/interfaces/gamess.int.disabled ---- WebMO.install.orig/cgi-bin/interfaces/gamess.int.disabled 2008-02-15 00:35:02.000000000 -0800 -+++ WebMO.install/cgi-bin/interfaces/gamess.int.disabled 2008-02-15 00:35:28.000000000 -0800 -@@ -2,7 +2,7 @@ - interfaceDescription{'gamess_admin'}="Edit preferences specific to Gamess" - interfaceDescription{'gamess_name'}="Gamess" - gamessVersion="2007" --gamessGMSPATH="/usr/local/gamess" -+gamessGMSPATH="/usr/bin" - gamessBinary="gamess.00.x" - gamessDdikick="ddikick.x" - cpuMin="0" -diff -ur WebMO.install.orig/cgi-bin/interfaces/mopac.int.disabled WebMO.install/cgi-bin/interfaces/mopac.int.disabled ---- WebMO.install.orig/cgi-bin/interfaces/mopac.int.disabled 2008-02-15 00:35:02.000000000 -0800 -+++ WebMO.install/cgi-bin/interfaces/mopac.int.disabled 2008-02-15 00:35:42.000000000 -0800 -@@ -2,7 +2,7 @@ - interfaceDescription{'mopac_admin'}="Edit preferences specific to Mopac" - interfaceDescription{'mopac_name'}="Mopac" - mopacVersion="7" --mopacPath="/usr/local/mopac7/mopac.exe" -+mopacPath="/usr/bin/mopac7" - mopacExternal="/usr/local/mopac7" - cpuMin="0" - cpuMax="100" -diff -ur WebMO.install.orig/cgi-bin/interfaces/tinker.int.disabled WebMO.install/cgi-bin/interfaces/tinker.int.disabled ---- WebMO.install.orig/cgi-bin/interfaces/tinker.int.disabled 2008-02-15 00:35:02.000000000 -0800 -+++ WebMO.install/cgi-bin/interfaces/tinker.int.disabled 2008-02-15 00:36:02.000000000 -0800 -@@ -2,9 +2,9 @@ - interfaceDescription{'tinker_admin'}="Edit preferences specific to Tinker" - interfaceDescription{'tinker_name'}="Tinker" - tinkerVersion="4.2" --tinkerBinDir="/usr/local/tinker/bin" --tinkerBinExt="x" --tinkerParamDir="/usr/local/tinker/params" -+tinkerBinDir="/usr/bin" -+tinkerBinExt="" -+tinkerParamDir="/usr/share/tinker/params" - cpuMin="0" - cpuMax="100" - cpuDefault="100" diff --git a/sci-chemistry/webmo/files/add-gamess-data-directory.patch b/sci-chemistry/webmo/files/add-gamess-data-directory.patch deleted file mode 100644 index 9120a5c89e1e..000000000000 --- a/sci-chemistry/webmo/files/add-gamess-data-directory.patch +++ /dev/null @@ -1,42 +0,0 @@ -diff -urN WebMO.install.orig/cgi-bin/interfaces/gamess.int.disabled WebMO.install/cgi-bin/interfaces/gamess.int.disabled ---- WebMO.install.orig/cgi-bin/interfaces/gamess.int.disabled 2005-12-03 14:58:39.000000000 -0800 -+++ WebMO.install/cgi-bin/interfaces/gamess.int.disabled 2005-12-03 14:58:59.000000000 -0800 -@@ -3,6 +3,7 @@ - interfaceDescription{'gamess_name'}="Gamess" - gamessVersion="Unknown" - gamessGMSPATH="/usr/bin" -+gamessDATAPATH="/usr/share/gamess/ericfmt" - gamessBinary="gamess.00.x" - gamessDdikick="ddikick.x" - cpuMin="0" -diff -urN WebMO.install.orig/cgi-bin/run_gamess.cgi WebMO.install/cgi-bin/run_gamess.cgi ---- WebMO.install.orig/cgi-bin/run_gamess.cgi 2005-11-21 07:40:28.000000000 -0800 -+++ WebMO.install/cgi-bin/run_gamess.cgi 2005-12-03 14:54:54.000000000 -0800 -@@ -30,7 +30,7 @@ - $ENV{'IRCDATA'} = $output_file.".irc"; - $ENV{'PUNCH'} = $output_file.".dat"; - $ENV{'INPUT'} = "$input_file.inp"; --$ENV{'ERICFMT'} = "$gamessGMSPATH/ericfmt.dat"; -+$ENV{'ERICFMT'} = "$gamessDATAPATH/ericfmt.dat"; - $ENV{'PATH'} = $ENV{'PATH'}.":".$gamessGMSPATH; - - # if we are using PBS, find out which host we are running on -diff -urN WebMO.install.orig/source/gamessmgr_admin.html WebMO.install/source/gamessmgr_admin.html ---- WebMO.install.orig/source/gamessmgr_admin.html 2005-11-21 07:40:28.000000000 -0800 -+++ WebMO.install/source/gamessmgr_admin.html 2005-12-03 14:55:00.000000000 -0800 -@@ -30,10 +30,14 @@ - - - -- Gamess directory -+ Gamess binary directory - - - -+ Gamess data directory (ericfmt) -+ -+ -+ - Gamess binary (name, not path) - - diff --git a/sci-chemistry/webmo/files/dont-be-interactive-or-diagnose.patch b/sci-chemistry/webmo/files/dont-be-interactive-or-diagnose.patch deleted file mode 100644 index a8edd1b6cc38..000000000000 --- a/sci-chemistry/webmo/files/dont-be-interactive-or-diagnose.patch +++ /dev/null @@ -1,28 +0,0 @@ -diff -urN WebMO.install.orig/setup.pl WebMO.install/setup.pl ---- WebMO.install.orig/setup.pl 2005-11-21 07:40:28.000000000 -0800 -+++ WebMO.install/setup.pl 2005-12-04 00:39:41.000000000 -0800 -@@ -82,7 +82,7 @@ - #get a username - my $username = `whoami`; chomp $username; - my $homedir = $ENV{'HOME'} ne "" ? $ENV{'HOME'} : `echo ~`; chomp $homedir; --if ($username eq "root") -+if ($username eq "root" && !$unattended_setup) - { - print < /dev/null - - # If a program is enabled, install .int.disabled changes to .int - for file in *.disabled; do - enabled_file=${file%.disabled} - echo -n "Checking for enabled interface '${enabled_file}' ... " - if [[ -e ${enabled_file} ]]; then - echo "yes" - for (( cfgnum=10#0000; cfgnum < 10#9999; cfgnum++ )); do - # A number can't be padded with zero's, but a string can - cfgstr=$(printf "%.4d" ${cfgnum}) - enabled_cfgfile=._cfg${cfgstr}_${enabled_file} - if [[ ! -e ${enabled_cfgfile} ]]; then - mv ${file} ${enabled_cfgfile} - break - fi - done - else - echo "no" - fi - done - - # Handle ._cfg* files properly, whether interfaces are enabled or not - for file in ._cfg*disabled; do - realfile=${file#._cfg*_} - enabled_file=${realfile%.disabled} - # If interface is enabled, then rename the config file - # But be considerate of other unmerged config files - if [[ -e ${enabled_file} ]]; then - cfgnum=${file%.disabled} - cfgnum=${cfgnum#._cfg} - cfgnum=10#${cfgnum%%_*} - for (( ; cfgnum < 10#9999; cfgnum++ )); do - # A number can't be padded with zero's, but a string can - cfgstr=$(printf "%.4d" ${cfgnum}) - enabled_cfgfile=._cfg${cfgstr}_${enabled_file} - if [[ ! -e ${enabled_cfgfile} ]]; then - mv ${file} ${enabled_cfgfile} - break - fi - done - fi - done - popd > /dev/null -else - echo "done." -fi - -if [ $1 = "clean" ]; then - echo "Please examine the contents of the following directories" - echo "and delete anything that is no longer necessary" - echo - echo ${VHOST_HTDOCSDIR} - echo ${VHOST_CGIBINDIR}/webmo - echo ${VHOST_ROOT}/webmo -fi diff --git a/sci-chemistry/webmo/metadata.xml b/sci-chemistry/webmo/metadata.xml deleted file mode 100644 index e42d0af60f42..000000000000 --- a/sci-chemistry/webmo/metadata.xml +++ /dev/null @@ -1,5 +0,0 @@ - - - - sci-chemistry - diff --git a/sci-chemistry/webmo/webmo-6.1.010.ebuild b/sci-chemistry/webmo/webmo-6.1.010.ebuild deleted file mode 100644 index ef1574a9ae14..000000000000 --- a/sci-chemistry/webmo/webmo-6.1.010.ebuild +++ /dev/null @@ -1,127 +0,0 @@ -# Copyright 1999-2011 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 -# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/webmo/webmo-6.1.010.ebuild,v 1.7 2011/06/27 05:30:11 jlec Exp $ - -inherit eutils webapp depend.apache - -MY_SRC_PN="WebMO" -MY_SRC_P="${MY_SRC_PN}.${PV}" -DESCRIPTION="Web-based interface to computational chemistry packages" -HOMEPAGE="http://webmo.net/" -SRC_URI="${MY_SRC_P}.tar.gz" - -LICENSE="WebMO" -SLOT="${PVR}" -KEYWORDS="" -IUSE="" - -DEPEND="dev-lang/perl" -RDEPEND="${DEPEND}" -need_apache2 - -RESTRICT="fetch" - -S="${WORKDIR}/${MY_SRC_PN}.install" - -pkg_setup() { - webapp_pkg_setup -} - -pkg_nofetch() { - einfo "Go to http://webmo.net/ and register for a free license." - einfo "Download ${SRC_URI} and place it in ${DISTDIR}." -} - -src_unpack() { - # We need a license number to proceed - if [[ -z ${WEBMO_LICENSE} ]]; then - msg="You must set WEBMO_LICENSE to your license number in make.conf." - ewarn "$msg" - die "$msg" - fi - - # Check for invalid license values. Valid are dddd-dddd-dddd - if [[ ${WEBMO_LICENSE} != [0-9][0-9][0-9][0-9]-[0-9][0-9][0-9][0-9]-[0-9][0-9][0-9][0-9] ]]; then - msg="Invalid license format. Licenses should be DDDD-DDDD-DDDD (D is a digit)." - ewarn "$msg" - die "$msg" - fi - - unpack ${A} - - # Set up program locations to match where portage installs them - epatch "${FILESDIR}"/gentoo-locations.patch - - # Add a data directory for gamess, because WebMO expects everything - # in one directory instead of FHS - # (Depends on gentoo-locations.patch) - epatch "${FILESDIR}"/add-gamess-data-directory.patch - - # Don't run diagnose.pl or ask about being root user - epatch "${FILESDIR}"/dont-be-interactive-or-diagnose.patch - - # Make setup.conf - create_setup_conf -} - -src_install() { - webapp_src_preinst - - # Install everything - perl setup.pl || die "Check '${S}'/diagnose.html for errors" - - # Get ${D} out of main config file - dosed "${MY_CGIBINDIR}/webmo/interfaces/globals.int" - - webapp_hook_script "${FILESDIR}"/reconfig - - local files=$(find "${D}"${MY_HOSTROOTDIR}/webmo "${D}"${MY_CGIBINDIR}/webmo/interfaces) - # Add the directories themselves - files="${files} ${MY_HOSTROOTDIR}/webmo ${MY_CGIBINDIR}/webmo/interfaces" - files=${files//${D}/} - for file in ${files}; do - webapp_configfile "${file}" - webapp_serverowned "${file}" - done - - ebegin "Fixing permissions" - pushd "${D}" > /dev/null - find . -perm /o+w -type f | xargs fperms 664 - find . -perm /o+w -type d | xargs fperms 775 - popd > /dev/null - eend 0 - - webapp_src_install -} - -pkg_postinst() { - elog - elog "Be sure that this line is uncommented in httpd.conf:" - elog "AddHandle cgi-scripts .cgi" - elog - elog "The diagnose.pl script can be run if WebMO doesn't work properly." - elog - ewarn "Be careful never to overwrite your user, group or job databases" - ewarn "when using etc-update after an upgrade." - - webapp_pkg_postinst -} - -create_setup_conf() { - local SETUP_CONF="${S}/setup.conf" - - echo_setup perlPath /usr/bin/perl "${SETUP_CONF}" - echo_setup htmlBase "${D}${MY_HTDOCSDIR}" "${SETUP_CONF}" - echo_setup url_htmlBase /webmo "${SETUP_CONF}" - echo_setup cgiBase "${D}${MY_CGIBINDIR}/webmo" "${SETUP_CONF}" - echo_setup url_cgiBase /cgi-bin/webmo "${SETUP_CONF}" - echo_setup userBase "${D}${MY_HOSTROOTDIR}/webmo" "${SETUP_CONF}" - echo_setup license "${WEBMO_LICENSE}" "${SETUP_CONF}" -} - -# Takes three arguments: -# 1: variable, 2: value, 3: file to echo them to -echo_setup() { - # All values must be double-quoted, so escape the inner quotes. - echo "${1}=\"${2}\"" >> ${3} -} diff --git a/sci-chemistry/webmo/webmo-7.0.003.ebuild b/sci-chemistry/webmo/webmo-7.0.003.ebuild deleted file mode 100644 index df32acbe36de..000000000000 --- a/sci-chemistry/webmo/webmo-7.0.003.ebuild +++ /dev/null @@ -1,127 +0,0 @@ -# Copyright 1999-2011 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 -# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/webmo/webmo-7.0.003.ebuild,v 1.6 2011/06/27 05:30:11 jlec Exp $ - -inherit eutils webapp depend.apache - -MY_SRC_PN="WebMO" -MY_SRC_P="${MY_SRC_PN}.${PV}" -DESCRIPTION="Web-based interface to computational chemistry packages" -HOMEPAGE="http://webmo.net/" -SRC_URI="${MY_SRC_P}.tar.gz" - -LICENSE="WebMO" -SLOT="${PVR}" -KEYWORDS="" -IUSE="" - -DEPEND="dev-lang/perl" -RDEPEND="${DEPEND}" -need_apache2 - -RESTRICT="fetch" - -S="${WORKDIR}/${MY_SRC_PN}.install" - -pkg_setup() { - webapp_pkg_setup -} - -pkg_nofetch() { - einfo "Go to http://webmo.net/ and register for a free license." - einfo "Download ${SRC_URI} and place it in ${DISTDIR}." -} - -src_unpack() { - # We need a license number to proceed - if [[ -z ${WEBMO_LICENSE} ]]; then - msg="You must set WEBMO_LICENSE to your license number in make.conf." - ewarn "$msg" - die "$msg" - fi - - # Check for invalid license values. Valid are dddd-dddd-dddd - if [[ ${WEBMO_LICENSE} != [0-9][0-9][0-9][0-9]-[0-9][0-9][0-9][0-9]-[0-9][0-9][0-9][0-9] ]]; then - msg="Invalid license format. Licenses should be DDDD-DDDD-DDDD (D is a digit)." - ewarn "$msg" - die "$msg" - fi - - unpack ${A} - - # Set up program locations to match where portage installs them - epatch "${FILESDIR}"/${PV}-gentoo-locations.patch - - # Add a data directory for gamess, because WebMO expects everything - # in one directory instead of FHS - # (Depends on gentoo-locations.patch) - epatch "${FILESDIR}"/add-gamess-data-directory.patch - - # Don't run diagnose.pl or ask about being root user - epatch "${FILESDIR}"/dont-be-interactive-or-diagnose.patch - - # Make setup.conf - create_setup_conf -} - -src_install() { - webapp_src_preinst - - # Install everything - perl setup.pl || die "Check '${S}'/diagnose.html for errors" - - # Get ${D} out of main config file - dosed "${MY_CGIBINDIR}/webmo/interfaces/globals.int" - - webapp_hook_script "${FILESDIR}"/reconfig - - local files=$(find "${D}"${MY_HOSTROOTDIR}/webmo "${D}"${MY_CGIBINDIR}/webmo/interfaces) - # Add the directories themselves - files="${files} ${MY_HOSTROOTDIR}/webmo ${MY_CGIBINDIR}/webmo/interfaces" - files=${files//${D}/} - for file in ${files}; do - webapp_configfile "${file}" - webapp_serverowned "${file}" - done - - ebegin "Fixing permissions" - pushd "${D}" > /dev/null - find . -perm /o+w -type f | xargs fperms 664 - find . -perm /o+w -type d | xargs fperms 775 - popd > /dev/null - eend 0 - - webapp_src_install -} - -pkg_postinst() { - elog - elog "Be sure that this line is uncommented in httpd.conf:" - elog "AddHandle cgi-scripts .cgi" - elog - elog "The diagnose.pl script can be run if WebMO doesn't work properly." - elog - ewarn "Be careful never to overwrite your user, group or job databases" - ewarn "when using etc-update after an upgrade." - - webapp_pkg_postinst -} - -create_setup_conf() { - local SETUP_CONF="${S}/setup.conf" - - echo_setup perlPath /usr/bin/perl "${SETUP_CONF}" - echo_setup htmlBase "${D}${MY_HTDOCSDIR}" "${SETUP_CONF}" - echo_setup url_htmlBase /webmo "${SETUP_CONF}" - echo_setup cgiBase "${D}${MY_CGIBINDIR}/webmo" "${SETUP_CONF}" - echo_setup url_cgiBase /cgi-bin/webmo "${SETUP_CONF}" - echo_setup userBase "${D}${MY_HOSTROOTDIR}/webmo" "${SETUP_CONF}" - echo_setup license "${WEBMO_LICENSE}" "${SETUP_CONF}" -} - -# Takes three arguments: -# 1: variable, 2: value, 3: file to echo them to -echo_setup() { - # All values must be double-quoted, so escape the inner quotes. - echo "${1}=\"${2}\"" >> ${3} -} diff --git a/sci-chemistry/webmo/webmo-8.0.010.ebuild b/sci-chemistry/webmo/webmo-8.0.010.ebuild deleted file mode 100644 index e234defad32a..000000000000 --- a/sci-chemistry/webmo/webmo-8.0.010.ebuild +++ /dev/null @@ -1,127 +0,0 @@ -# Copyright 1999-2011 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 -# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/webmo/webmo-8.0.010.ebuild,v 1.5 2011/06/27 05:30:11 jlec Exp $ - -inherit eutils webapp depend.apache - -MY_SRC_PN="WebMO" -MY_SRC_P="${MY_SRC_PN}.${PV}" -DESCRIPTION="Web-based interface to computational chemistry packages" -HOMEPAGE="http://webmo.net/" -SRC_URI="${MY_SRC_P}.tar.gz" - -LICENSE="WebMO" -SLOT="${PVR}" -KEYWORDS="" -IUSE="" - -DEPEND="dev-lang/perl" -RDEPEND="${DEPEND}" -need_apache2 - -RESTRICT="fetch" - -S="${WORKDIR}/${MY_SRC_PN}.install" - -pkg_setup() { - webapp_pkg_setup -} - -pkg_nofetch() { - einfo "Go to http://webmo.net/ and register for a free license." - einfo "Download ${SRC_URI} and place it in ${DISTDIR}." -} - -src_unpack() { - # We need a license number to proceed - if [[ -z ${WEBMO_LICENSE} ]]; then - msg="You must set WEBMO_LICENSE to your license number in make.conf." - ewarn "$msg" - die "$msg" - fi - - # Check for invalid license values. Valid are dddd-dddd-dddd - if [[ ${WEBMO_LICENSE} != [0-9][0-9][0-9][0-9]-[0-9][0-9][0-9][0-9]-[0-9][0-9][0-9][0-9] ]]; then - msg="Invalid license format. Licenses should be DDDD-DDDD-DDDD (D is a digit)." - ewarn "$msg" - die "$msg" - fi - - unpack ${A} - - # Set up program locations to match where portage installs them - epatch "${FILESDIR}"/8.0.010-gentoo-locations.patch - - # Add a data directory for gamess, because WebMO expects everything - # in one directory instead of FHS - # (Depends on gentoo-locations.patch) - epatch "${FILESDIR}"/8.0.010-add-gamess-data-directory.patch - - # Don't run diagnose.pl or ask about being root user - epatch "${FILESDIR}"/dont-be-interactive-or-diagnose.patch - - # Make setup.conf - create_setup_conf -} - -src_install() { - webapp_src_preinst - - # Install everything - perl setup.pl || die "Check '${S}'/diagnose.html for errors" - - # Get ${D} out of main config file - dosed "${MY_CGIBINDIR}/webmo/interfaces/globals.int" - - webapp_hook_script "${FILESDIR}"/reconfig - - local files=$(find "${D}"${MY_HOSTROOTDIR}/webmo "${D}"${MY_CGIBINDIR}/webmo/interfaces) - # Add the directories themselves - files="${files} ${MY_HOSTROOTDIR}/webmo ${MY_CGIBINDIR}/webmo/interfaces" - files=${files//${D}/} - for file in ${files}; do - webapp_configfile "${file}" - webapp_serverowned "${file}" - done - - ebegin "Fixing permissions" - pushd "${D}" > /dev/null - find . -perm /o+w -type f | xargs fperms 664 - find . -perm /o+w -type d | xargs fperms 775 - popd > /dev/null - eend 0 - - webapp_src_install -} - -pkg_postinst() { - elog - elog "Be sure that this line is uncommented in httpd.conf:" - elog "AddHandle cgi-scripts .cgi" - elog - elog "The diagnose.pl script can be run if WebMO doesn't work properly." - elog - ewarn "Be careful never to overwrite your user, group or job databases" - ewarn "when using etc-update after an upgrade." - - webapp_pkg_postinst -} - -create_setup_conf() { - local SETUP_CONF="${S}/setup.conf" - - echo_setup perlPath /usr/bin/perl "${SETUP_CONF}" - echo_setup htmlBase "${D}${MY_HTDOCSDIR}" "${SETUP_CONF}" - echo_setup url_htmlBase /webmo "${SETUP_CONF}" - echo_setup cgiBase "${D}${MY_CGIBINDIR}/webmo" "${SETUP_CONF}" - echo_setup url_cgiBase /cgi-bin/webmo "${SETUP_CONF}" - echo_setup userBase "${D}${MY_HOSTROOTDIR}/webmo" "${SETUP_CONF}" - echo_setup license "${WEBMO_LICENSE}" "${SETUP_CONF}" -} - -# Takes three arguments: -# 1: variable, 2: value, 3: file to echo them to -echo_setup() { - # All values must be double-quoted, so escape the inner quotes. - echo "${1}=\"${2}\"" >> ${3} -}