From: David Seifert <soap@gentoo.org>
Date: Mon, 3 Oct 2016 20:16:56 +0000 (+0200)
Subject: sci-biology/tophat: Do not wrap scripts
X-Git-Url: http://git.tremily.us/gitweb.cgi?a=commitdiff_plain;h=43ec20457f931039230784be90893ef70f4a2f3c;p=gentoo.git

sci-biology/tophat: Do not wrap scripts

Package-Manager: portage-2.3.1
---

diff --git a/sci-biology/tophat/tophat-2.1.1-r2.ebuild b/sci-biology/tophat/tophat-2.1.1-r3.ebuild
similarity index 95%
rename from sci-biology/tophat/tophat-2.1.1-r2.ebuild
rename to sci-biology/tophat/tophat-2.1.1-r3.ebuild
index 52a75a6d5964..4d784fa9bfb9 100644
--- a/sci-biology/tophat/tophat-2.1.1-r2.ebuild
+++ b/sci-biology/tophat/tophat-2.1.1-r3.ebuild
@@ -6,7 +6,7 @@ EAPI=6
 
 PYTHON_COMPAT=( python2_7 )
 
-inherit autotools eutils flag-o-matic python-single-r1 toolchain-funcs
+inherit autotools flag-o-matic python-single-r1 toolchain-funcs
 
 DESCRIPTION="Python-based splice junction mapper for RNA-Seq reads using bowtie2"
 HOMEPAGE="https://ccb.jhu.edu/software/tophat/"
@@ -70,7 +70,7 @@ src_install() {
 	local i
 	# install scripts properly
 	for i in bed_to_juncs contig_to_chr_coords sra_to_solid tophat tophat-fusion-post; do
-		python_doscript "${ED%/}/usr/bin/${i}"
+		python_fix_shebang "${ED%/}/usr/bin/${i}"
 	done
 
 	# install python modules properly