From: Andrey Kislyuk Date: Mon, 26 Dec 2011 05:51:16 +0000 (+0000) Subject: Version bump X-Git-Url: http://git.tremily.us/gitweb.cgi?a=commitdiff_plain;h=2fd559c9f1c3cc923e8380c9808140521ad2fb96;p=gentoo.git Version bump Package-Manager: portage-2.2.0_alpha74/cvs/Linux x86_64 --- diff --git a/sci-biology/biopython/ChangeLog b/sci-biology/biopython/ChangeLog index d8188ff3ab11..d8ebb4cc0485 100644 --- a/sci-biology/biopython/ChangeLog +++ b/sci-biology/biopython/ChangeLog @@ -1,6 +1,14 @@ # ChangeLog for sci-biology/biopython # Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/biopython/ChangeLog,v 1.65 2011/06/23 14:55:47 hwoarang Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-biology/biopython/ChangeLog,v 1.66 2011/12/26 05:51:16 weaver Exp $ + + 26 Dec 2011; Andrey Kislyuk +biopython-1.58.ebuild: + Version bump + +*biopython-1.58 (26 Dec 2011) + + 26 Dec 2011; Andrey Kislyuk +biopython-1.58.ebuild: + Version bump 23 Jun 2011; Markos Chandras -biopython-1.56.ebuild: Remove old ebuilds. Requested by Arfrever diff --git a/sci-biology/biopython/Manifest b/sci-biology/biopython/Manifest index 513b88c3eddc..4f64947133d8 100644 --- a/sci-biology/biopython/Manifest +++ b/sci-biology/biopython/Manifest @@ -1,25 +1,17 @@ -----BEGIN PGP SIGNED MESSAGE----- -Hash: SHA512 +Hash: SHA1 AUX biopython-1.51-flex.patch 782 RMD160 a69deb13b97f80ec6aed7ec7975e0de4846fe2fa SHA1 dad1c962a632efeccbbec61b79feb71abccbe030 SHA256 ad957b435fc70b218a7a65eb492b0eae5f82b7c6371d2f1451c9dd714fa056dc DIST biopython-1.57.tar.gz 6945024 RMD160 ae061442a97decbd9951af8f85913bbc3747ffee SHA1 dbbd23c9f555e0c69d61db96f8aa368617ecacef SHA256 07c16a86127770c8d5b653a6e82fee0999159f7284a3a01c98cf66ed2f0ec4a0 +DIST biopython-1.58.tar.gz 8035063 RMD160 3e05426017e98cdc45cacfb08b1b5d7c3d4b10ff SHA1 3db0819d0046cfcd1c9aaf39aa7db40b9aa2645e SHA256 f9183facf01d3b0b489401f43a0cae8249c3dd1f7452d939f137980f5e683e73 EBUILD biopython-1.57.ebuild 1427 RMD160 8ace67eb6086526d1113b05f3019cd70f2c531ec SHA1 532b8fd3d6ecad7c3d64f1bbd908ab6afa6607aa SHA256 9fee7df9ef9f8e3cb8f83993f49daf855500be23cff8af268c3ca9ae4bf4a177 -MISC ChangeLog 10326 RMD160 e0dcab17ec14bbd5790e620682ca843513501031 SHA1 051cc395a080eddd0e1e9cd3e43607cef2159e30 SHA256 ee2d613415bd34966cdcef23b3c55c21b2678a15141232fe81c6905f1dc6af32 +EBUILD biopython-1.58.ebuild 1430 RMD160 19420eed4ddfe66a4306dbde8540650d0dffc9ca SHA1 8242fc760d79753901ca515b9b7e79b9936bd1ff SHA256 45ccfb5d327c035bf09cc289914bf3fa8eab79dd775b8d97eef663b82b5135a3 +MISC ChangeLog 10535 RMD160 72e6763d6cd517bed234480618920e3b1d027e07 SHA1 7785c7ff07bc89c8713dec0ced9589d3df8a1291 SHA256 089d1ca26506a696b43d136dd07a6a84ac791a09515265bdb3ebb1316a1cec16 MISC metadata.xml 164 RMD160 2f441200f2672ab5f1efae7cbdb08b284603903c SHA1 61a50baedfd041e663d6c2a41a28b57e22dbb6de SHA256 f0897b09e661dc603041dab249d73253034659189becf1a34cca37a7d51ef72f -----BEGIN PGP SIGNATURE----- -Version: GnuPG v2.0.17 (GNU/Linux) +Version: GnuPG v1.4.11 (GNU/Linux) -iQIcBAEBCgAGBQJOA1RWAAoJEPqDWhW0r/LCHGsP/jLT0ap+VxvSQR05rTTak5Qf -F3CiAsX+LkBdX07zjlZ1u//whdnp/qqjCJ0M/iaqY/aVETJash5mhX88sAw/7ndW -lztKH1qRj9WVX3YWXKztZMEtIqcXLa0wySQh6YnePXC1wqPOWOkgtQTY0yMYgSfb -ok93APxpAKKKLUmDHVT0mtM5qkV0EMfN1/t23YNoQ7RP8KDd6uImF3Y6htpvlbfM -0uggJ3qDzAsBwjLPhBKjrSe+0Oh615SHKp0Hppwi9sVRd+LPODTkkXXGCU/F342m -6ssG6jy+oP0eNtDScul4SGQ0oGkLBZmQrBdBmiP4US0iHwxGMII+ORCadVFa0sHw -K7BQV7YF4tFliZIRnxgUjQNcdqmsPg4HX4CkcCEg1KXCxms2aN9zR0QD9F0QTgFN -PeyjBX9ORG+QjY2fME+eACjqpI9D0XNPLxl4zrpGfMvsDUV+2id8N84NNvW6/18e -RsOxT/4r8G/oxGSi9TH22671SHQvNkLucfkkTX/CqaaH3l/HuiO0krkcXfZh8tlf -8TxHHvr/2JaXIQPaHJXKuWg5oiDJMhyuJcpVzHfZquGRgLbo4CNyqJuNMr6XPMfp -uk2uSTtx3BT7M36xFahP75au4KHGP4soPjJ7syt70IF6sUqk5C+jnn0uO6l/+sL2 -BgsYqHdKZ2DX5uqqu9tg -=dexS +iEYEARECAAYFAk74C1oACgkQ8xSwyhbn2Oa12gCcC7gKteqduh1qug3TBZLCzSSj +7SoAn2xIT18OtTyWqiulkjatky94xGPb +=kHKH -----END PGP SIGNATURE----- diff --git a/sci-biology/biopython/biopython-1.58.ebuild b/sci-biology/biopython/biopython-1.58.ebuild new file mode 100644 index 000000000000..4e219b27da2b --- /dev/null +++ b/sci-biology/biopython/biopython-1.58.ebuild @@ -0,0 +1,55 @@ +# Copyright 1999-2011 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/biopython/biopython-1.58.ebuild,v 1.1 2011/12/26 05:51:16 weaver Exp $ + +EAPI=3 +PYTHON_DEPEND="2" +SUPPORT_PYTHON_ABIS="1" +RESTRICT_PYTHON_ABIS="3.* *-jython" + +inherit distutils eutils + +DESCRIPTION="Python modules for computational molecular biology" +HOMEPAGE="http://www.biopython.org/ http://pypi.python.org/pypi/biopython/" +SRC_URI="http://www.biopython.org/DIST/${P}.tar.gz" + +LICENSE="as-is" +SLOT="0" +KEYWORDS="~amd64 ~ppc ~x86" +IUSE="mysql postgres" + +RDEPEND=" + dev-python/numpy + dev-python/reportlab + mysql? ( dev-python/mysql-python ) + postgres? ( dev-python/psycopg )" +DEPEND="${RDEPEND} + sys-devel/flex" + +PYTHON_CFLAGS=("2.* + -fno-strict-aliasing") + +DISTUTILS_USE_SEPARATE_SOURCE_DIRECTORIES="1" +DOCS="CONTRIB DEPRECATED NEWS README" +PYTHON_MODNAME="Bio BioSQL" + +src_prepare() { + distutils_src_prepare + epatch "${FILESDIR}/${PN}-1.51-flex.patch" +} + +src_test() { + testing() { + cd Tests + PYTHONPATH="$(ls -d ../build/lib.*)" "$(PYTHON)" run_tests.py + } + python_execute_function --nonfatal -s testing +} + +src_install() { + distutils_src_install + + insinto /usr/share/doc/${PF} + doins -r Doc/* || die "Installation of documentation failed" + insinto /usr/share/${PN} + cp -r --preserve=mode Scripts Tests "${ED}usr/share/${PN}" || die "Installation of shared files failed" +}