EAPI Bump

Package-Manager: portage-2.2.18/cvs/Linux x86_64
Manifest-Sign-Key: 0xB9D4F231BD1558AB!

diff --git a/sci-biology/mammoth/ChangeLog b/sci-biology/mammoth/ChangeLog
index 594acc031308b7411344a379204e447f9bdc37a0..9b62db4a2d37e31012c400b38749f0f50894aa89 100644 (file)
--- a/sci-biology/mammoth/ChangeLog
+++ b/sci-biology/mammoth/ChangeLog
@@ -1,6 +1,12 @@
 # ChangeLog for sci-biology/mammoth
-# Copyright 1999-2012 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/mammoth/ChangeLog,v 1.6 2012/10/19 10:46:56 jlec Exp $
+# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/mammoth/ChangeLog,v 1.7 2015/03/05 11:07:15 jlec Exp $
+
+*mammoth-1.0-r1 (05 Mar 2015)
+
+  05 Mar 2015; Justin Lecher <jlec@gentoo.org> +mammoth-1.0-r1.ebuild,
+  -mammoth-1.0.ebuild, metadata.xml:
+  EAPI Bump
 
   19 Oct 2012; Justin Lecher <jlec@gentoo.org> mammoth-1.0.ebuild,
   metadata.xml:
@@ -26,4 +32,3 @@
   +mammoth-1.0.ebuild:
   Add mammoth, a nice structural alignment program. It contains the MaxSub
   algorithm, which is used by lots of people.
-

diff --git a/sci-biology/mammoth/Manifest b/sci-biology/mammoth/Manifest
index 74659bb3d88359ff00ed6a69ad46d33a6f9eca26..9228393fa60c8da2b9999e11031302e4b9c526df 100644 (file)
--- a/sci-biology/mammoth/Manifest
+++ b/sci-biology/mammoth/Manifest
@@ -1,16 +1,27 @@
 -----BEGIN PGP SIGNED MESSAGE-----
-Hash: SHA256
+Hash: SHA512
 
 AUX 1.0-consistent-system-intrinsic.patch 680 SHA256 34f47d312af131414154a244218bb4e548d51a3d34b9ed4379c2ec90fba094ca SHA512 98fac1ee502ead1109a36b80cce422cf36b0cbbc8971fd345ef1386d050382652211518a2957096d83f36fc44ba8339b9d23f82dcbc04845e5d65a3c6f66cb50 WHIRLPOOL 6512f997e0806eada9a6535c07c9cad1c1d95ed6736436782b0d5ef5346bda8bd596e450cf76baa3a376cbc36cf039d173404ff5f70df5753c29811604c154db
 DIST mammoth-1.0-src.tgz 319617 SHA256 7a21bc47db4a47cc5ebeeb4c46761a79eece0a802104a3d6189f388a03e59de2
-EBUILD mammoth-1.0.ebuild 1227 SHA256 e178417faff6327efa7b3f2f52355775791efee08d6532c7d2c3f4056acfaed1 SHA512 7faf41153e3486214cedc77235ed9d09d75802d9da0c7abbf1d71f54314e21017aca5a563ab17392ea5c30d0cd106b97ec2d225d1df857d2fa56493520c45e33 WHIRLPOOL 657770c80b7f8f895db6a6e0d25f8d28435b077caed688bb6c6b0b8760ff9f14559a2dd386dba998e16b8b6640eaeb6141a5528ee4ea9bf2f82baa56303b5d31
-MISC ChangeLog 1108 SHA256 d0fa1788a9b9698d1c0fbd4bdfe9364820e578556c781332482821c016d24979 SHA512 0b228af7ec08d1ccc37326da02ed2bf2809ae5b2ec0c1b4a6d87003920316227e2e3406eddb5db7a6d97314c272a6760434dc19e2b364115ea716ffcaa46d66a WHIRLPOOL 4ac4ba7924688422796abe649b6bcc4611274b7c9ad75e3cac144032dcc3eba01c0411db729743ffd3427da44eaafc12a711421839e697a9191e7c9ade74003a
-MISC metadata.xml 165 SHA256 560c375768c8e164d954d61924f110da785b4771012cb830963eaa267a319132 SHA512 f197731b98b313b41180dc4b553dab070b28f1badcb259973d528640166feaf8b6c48f56158431d1a4daac9b2873da05c2bd4e4ec269db310581d398a494d166 WHIRLPOOL 83774f905f256ee3dc965af16b472d0ac546314f46d02414b1da590eae1059f8076e63d67f763f9a3afb60a12072fd18c49937b039acbc8ac599ae45c0a04139
+EBUILD mammoth-1.0-r1.ebuild 1106 SHA256 ba0576493165d5cdb39a24070596f3d0adede4f3cb187c220b6fe06f74f5d936 SHA512 1efa95d4de678deed7fa994455cc98b7efc16c32dd522564bb24ce3ba7e3405bd6c8e87177e86e000c0fb3ffb935a59e1071c8675cb4d28c3c912764e0b10279 WHIRLPOOL 7559215e31095a5eb0ff2a738ff195c2e8fa26888492e91cb25040f26385c69eac22a8ceef01ab83af67866341ce4be327eaf4df3cdb1aac3a7bc554b3c81e84
+MISC ChangeLog 1259 SHA256 ec0b6f065a448fdd6a2b31b73b2e07b79fe1d6eed897f03181afeba7767b7e03 SHA512 fd95f36c075c7ae80bac82dd1a340f839887c321e35fe840b9e29e47a0d88808cb97bce7c37c66bd4e608ea3d1368bbbc0df7a60c3f7fd51278fea3ad5a07b39 WHIRLPOOL 8256a6bf294f34e4bd44737afd9c72a042f366b9087e00b0b129ef34d039de4693afe23c2ffa70c93dbeae9ab2b75373dd88a455ebb377f1d42a2f960e486419
+MISC metadata.xml 166 SHA256 29b228f683c71345323d841414e410c929a320f34536eb30910498728260c8ac SHA512 51c5345bb1c4466b73e2feac8895c64fc119365e7f2c156702f4c93664d3aba028b3da9daaabf24f61a88220345fca7806771a252e8ae906cac5dec97862c7e0 WHIRLPOOL 211bf955d94fc1d93b12388a2c597a8d440fb5d78f84d59b2549569537098c3525b1fbab707441d62fabe20edcac2fd9ebe09c5d9870f1c9558d7ee90d5db5b3
 -----BEGIN PGP SIGNATURE-----
-Version: GnuPG v2.0.19 (GNU/Linux)
-Comment: GPGTools - http://gpgtools.org
+Version: GnuPG v2.0
 
-iEYEAREIAAYFAlCBL6EACgkQgAnW8HDreRbhagCfRmb1CSRVH2FL0Li78shXj9Kc
-3XAAoJ4dthqnJeGLzWwAOl8OYFG79NBg
-=clQB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+=L5uU
 -----END PGP SIGNATURE-----

diff --git a/sci-biology/mammoth/mammoth-1.0.ebuild b/sci-biology/mammoth/mammoth-1.0-r1.ebuild
similarity index 80%
rename from sci-biology/mammoth/mammoth-1.0.ebuild
rename to sci-biology/mammoth/mammoth-1.0-r1.ebuild
index d1d9a1719b1c9107491cc0566d6ad4a87ca52872..b93fbfa806e225c80437e1c10da987a9fdc23eeb 100644 (file)
--- a/sci-biology/mammoth/mammoth-1.0.ebuild
+++ b/sci-biology/mammoth/mammoth-1.0-r1.ebuild
@@ -1,6 +1,8 @@
-# Copyright 1999-2012 Gentoo Foundation
+# Copyright 1999-2015 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/mammoth/mammoth-1.0.ebuild,v 1.6 2012/10/19 10:46:56 jlec Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/mammoth/mammoth-1.0-r1.ebuild,v 1.1 2015/03/05 11:07:15 jlec Exp $
+
+EAPI=5
 
 inherit autotools eutils fortran-2 flag-o-matic toolchain-funcs
 
@@ -25,10 +27,7 @@ pkg_nofetch() {
        einfo "and place it in ${DISTDIR}"
 }
 
-src_unpack() {
-       unpack ${A}
-       cd "${S}"
-
+src_prepare() {
        # Broken with gfortran without this patch
        epatch "${FILESDIR}"/${PV}-consistent-system-intrinsic.patch
 
@@ -42,8 +41,3 @@ src_unpack() {
        # Let's do the standard stuff instead.
        eautoreconf
 }
-
-src_install() {
-       emake DESTDIR="${D}" install || die "emake install failed"
-       dodoc README AUTHORS || die
-}

diff --git a/sci-biology/mammoth/metadata.xml b/sci-biology/mammoth/metadata.xml
index d4648212cbad546e8f10fb42efdcf38118469ccc..f17a827e310198336846040c3e61382ed748e991 100644 (file)
--- a/sci-biology/mammoth/metadata.xml
+++ b/sci-biology/mammoth/metadata.xml
@@ -1,5 +1,5 @@
 <?xml version="1.0" encoding="UTF-8"?>
 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
 <pkgmetadata>
-       <herd>sci-biology</herd>
+  <herd>sci-biology</herd>
 </pkgmetadata>