Version Bump

Package-Manager: portage-2.2.18/cvs/Linux x86_64
Manifest-Sign-Key: 0xB9D4F231BD1558AB!

diff --git a/sci-biology/prank/ChangeLog b/sci-biology/prank/ChangeLog
index 246b5d1860ad8a08cd61de7c18b7448a1e0c8ff9..5940618c352ff91ceb90050a2b1ada67c650ec70 100644 (file)
--- a/sci-biology/prank/ChangeLog
+++ b/sci-biology/prank/ChangeLog
@@ -1,6 +1,12 @@
 # ChangeLog for sci-biology/prank
-# Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/prank/ChangeLog,v 1.10 2013/03/11 16:50:01 jlec Exp $
+# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/prank/ChangeLog,v 1.11 2015/03/29 13:52:32 jlec Exp $
+
+*prank-140603 (29 Mar 2015)
+
+  29 Mar 2015; Justin Lecher <jlec@gentoo.org> +prank-140603.ebuild,
+  prank-100701.ebuild, prank-111130.ebuild:
+  Version Bump
 
   11 Mar 2013; Justin Lecher <jlec@gentoo.org> metadata.xml:
   Drop Andrey as maintainer so that bugs get assigned to sci-biology directly
@@ -47,4 +53,3 @@
   09 Apr 2009; Andrey Kislyuk <weaver@gentoo.org> +metadata.xml,
   +prank-081202.ebuild:
   New package, ebuild written by me
-

diff --git a/sci-biology/prank/Manifest b/sci-biology/prank/Manifest
index 84077d5da8492c73847049dd494391a36fe90cf9..a1775411666ea59c82baaffd3dd2181475c2e061 100644 (file)
--- a/sci-biology/prank/Manifest
+++ b/sci-biology/prank/Manifest
@@ -1,17 +1,31 @@
 -----BEGIN PGP SIGNED MESSAGE-----
-Hash: SHA256
+Hash: SHA512
 
 AUX prank-111130-gcc-4.7.patch 351 SHA256 33f64995a02d937dd844149bff3df62af518304801ea85a1a9a70daa886088ca SHA512 10f977ba76308040e1ca93ac5eafd9645ab5a09e89a964694ec41748568123b9c935bb08b094457cd0881094a0302bc426c61bb14b24703a342648ec7e3d8f9d WHIRLPOOL 65518f1c3d3ec9f3586e9ed70c3570e129315ceb16d18f7339ba5da7479f8fa505ad74837b184824cf668671aaf483e507a811efed0f5457c9a778e3711826d9
+DIST prank.source.140603.tgz 150346 SHA256 9a48064132c01b6dba1eec90279172bf6c13d96b3f1b8dd18297b1a53d17dec6 SHA512 25e5f99a3822ff31436406f9ba1c781ba375959e1ed452c1e7416898d5246183510ec6d2bc715ff1495a779e42d7bd1d49ad1c332e1bd5982dad8c744ad999c7 WHIRLPOOL 5884563e6035b7e5a06b064035980e9fcee1cafcf559d86c8b9c8fc23628c7e9d1ba3e153a06f7322bb536120adcc6c8d169381f95d0a491b57836ada35a0de6
 DIST prank.src.100701.tgz 115444 SHA256 2ba63fc8f998a86e6fc688170b03f831eeb8d8deda95cbf0986e8a3a3b09ec79
-DIST prank.src.111130.tgz 133330 SHA256 61473a6b7b199f2d05e35a31adf813a2813decc9aa1429de118b62a51d7aac14
-EBUILD prank-100701.ebuild 735 SHA256 81dd817ae4547fb0a70853bcfb5d38971c0e34c4b57ca5650254592dce0f6c6e SHA512 57b240cf2ab8ceb19d87be72b20c1344398b6e6932806c86d2133584766ed119f4582a173b4ea5d39195f0e3e2ee0ddb4e0c2c38d7e40b322f6f0e0323ebb7fc WHIRLPOOL e977f9a420ec2fd9fb65c2a8b9302dd9d64597de0ce51b9c7b590011c99219677834e0edb9c70e0604ee06bb4bbd0dacebcb7952f551de1f05f446a2ddf09269
-EBUILD prank-111130.ebuild 886 SHA256 77bf107fc51c705beca372e74f41e8b4d97a50e5853c57f4e8338df69d8d0aab SHA512 debcccde77f2f4190901141208b36bc736f53e709a906748b641d34e6ba1bcc284650636bd8b2c7cb47df1f2fce40c77ec3b89d9ce9f2201399b12c1f0c9ee8e WHIRLPOOL c643a7e3d8088beb2b7362f0921063b205b806842835bfb6776a5406771ad3373e4b664981d0453861827511108539da86fb2a8426e7c2518a9a55bd9aed6838
-MISC ChangeLog 1683 SHA256 9b580972c000347acc7032ec37f88724a2de2be7f42fd4084d8a7654244f7ee9 SHA512 32b82de1eb564276ff2358a6ed49676156d24465a0453ce4fdd0b0c3ff0183b08606eab3432e98dca1610ace36ad705c215100708ae49b18fa686a65691439fa WHIRLPOOL d4a6ba4e8573573b090c35386c6f0f3b3bb6b95aafae6e52b60a9ddee371c79a7231f2ddad957c5a6f4ac2fc9f30ea6b1c84deb43cab36fd51e1701979fc1d6a
+DIST prank.src.111130.tgz 133330 SHA256 61473a6b7b199f2d05e35a31adf813a2813decc9aa1429de118b62a51d7aac14 SHA512 94f382bd71d6a58fe9b87b436bdec97ed297ebf88f3074d8e2971a24dcdc4509e737161aa057be0ac15783c1cfe7ca6d0a09ad80d0247b92426134097d4b400c WHIRLPOOL 37b96f3dc0e53f7d0b70ddfc5664dc65eff4dbec322788d391c32f5d74103663b547825dcc58fe5da3b5b44086c36fcf00a3a2253e696d6212baa3958d13fc5b
+EBUILD prank-100701.ebuild 726 SHA256 4ab40b9d1dc6a8858c532b5303eb830067ceda052210806be833f08b3a0c1afe SHA512 762485bd5f39674dc9fd7a313e0c049d6a8d501cd0fbcd4540f6cd1ace823a2116cb438499be092c79c81ebf8a1813acfc545d42edb36aad8a66cf96905aa8e0 WHIRLPOOL 3275eb3f98b552a0fc5198f11342c0a0ac0d7585551a554f3c46cc1f7a04854823e3e662257db46e0b1c9daf14e286b37347264f9cb343e3c3606968a293de14
+EBUILD prank-111130.ebuild 841 SHA256 0758d8669f8bf55ce2d5ab287c48e8652e942766c87c369f5b2be6ded4613ab3 SHA512 8f5d9183c6d6369bbbeafa9b08cadbf752da6fd24108cc10d1bff6158c14a901732c48f0561a081611a4e314e0849881140be8c36a5273eb4b7d8587cac87da1 WHIRLPOOL 2a8f67a8d27bf06d24a3d5e243e2437e98b4524e4a6228909e03984dada64c26848fc3ce3a209912907112a64c53e71a98947778dec10044d8b3a33e2b067738
+EBUILD prank-140603.ebuild 801 SHA256 63330ed009925fd151d91d96f45f5a85b3bd2c112e1b76758e3f1d0b4c0b1be5 SHA512 a5e373cb3e178d785518efdd506e072d85ffee6bf8b5eb264f421ade4a5b0d7ca88bb5e52435992eded213768f26d99dc014e92a4162baa71220072480647cdc WHIRLPOOL f22160056f43ea76fe8d44b081aa56cc908a8bfd44dcbb93938df8413ccd553f863a3012730a3c0f8a54fefe89818312a7906c9775d20dd9bb673d907d8e0a61
+MISC ChangeLog 1840 SHA256 d44f30b3a7725bd7b85e093058ec287dcecd0ef8896481efba6a9a15d96cb696 SHA512 87be0c60539ad6f91fd4bd1d29c3f8744ca8dfcb41b77766d2550d9649b475784f3c36690e66eca6ae2d1663e3fedc7637f3ab59f285f2322a0e2981b5322383 WHIRLPOOL a0df85ee894a20a4d3287cf4ac7b36d525e4be7548772a405d4e287be299c5747be9000c4a4eb6bde6432e791a9425b93a653df312f4a1308d0a37bdd7720540
 MISC metadata.xml 249 SHA256 6f59c2b08b70407ece8937f5f2703e4329fa189a1f843f3ba0fe77d4106ea19e SHA512 d34716c87cce27a954c57e3e3b28179ff7c03caf1aa653dd8fd032cc2b7e99264ba1d09d1ba355252e73396a7404aa3f13e950b8a1b5837cc20690946cd2e845 WHIRLPOOL d116eb2fea7969d03d12a7847780f8bf63d4e9e618ee2fae5106d9989da0538df08965e194349bfb7e17ac22886fe2b00383e2e90b1d8afa7c00f536c2344648
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-Version: GnuPG v2.0.19 (GNU/Linux)
+Version: GnuPG v2.0
 
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diff --git a/sci-biology/prank/prank-100701.ebuild b/sci-biology/prank/prank-100701.ebuild
index 096358fc9c0c58ffec3b15c36ec6782d8607e6a5..4f165d9b8fa8ea3ba821d75c9107e21216eeeec3 100644 (file)
--- a/sci-biology/prank/prank-100701.ebuild
+++ b/sci-biology/prank/prank-100701.ebuild
@@ -1,13 +1,13 @@
-# Copyright 1999-2012 Gentoo Foundation
+# Copyright 1999-2015 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/prank/prank-100701.ebuild,v 1.3 2012/06/20 21:12:38 jlec Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/prank/prank-100701.ebuild,v 1.4 2015/03/29 13:52:32 jlec Exp $
 
 EAPI=4
 
 inherit toolchain-funcs
 
 DESCRIPTION="Probabilistic Alignment Kit"
-HOMEPAGE="http://www.ebi.ac.uk/goldman-srv/prank/prank/"
+HOMEPAGE="http://wasabiapp.org/software/prank/"
 SRC_URI="http://www.ebi.ac.uk/goldman-srv/prank/src/prank/prank.src.${PV}.tgz"
 
 LICENSE="GPL-2"

diff --git a/sci-biology/prank/prank-111130.ebuild b/sci-biology/prank/prank-111130.ebuild
index 3640e23a06dcc1430de77d53c43f28f38054460d..fa6251f0a6fb3fdce5ce28f1a9b08592bd4e5175 100644 (file)
--- a/sci-biology/prank/prank-111130.ebuild
+++ b/sci-biology/prank/prank-111130.ebuild
@@ -1,13 +1,13 @@
-# Copyright 1999-2012 Gentoo Foundation
+# Copyright 1999-2015 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/prank/prank-111130.ebuild,v 1.2 2012/06/20 21:12:38 jlec Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/prank/prank-111130.ebuild,v 1.3 2015/03/29 13:52:32 jlec Exp $
 
 EAPI=4
 
 inherit eutils multilib toolchain-funcs
 
 DESCRIPTION="Probabilistic Alignment Kit"
-HOMEPAGE="http://code.google.com/p/prank-msa/ http://www.ebi.ac.uk/goldman-srv/prank/prank/"
+HOMEPAGE="http://wasabiapp.org/software/prank/"
 SRC_URI="http://prank-msa.googlecode.com/files/prank.src.${PV}.tgz"
 
 LICENSE="GPL-3"

diff --git a/sci-biology/prank/prank-140603.ebuild b/sci-biology/prank/prank-140603.ebuild
new file mode 100644 (file)
index 0000000..ad6e49b
--- /dev/null
+++ b/sci-biology/prank/prank-140603.ebuild
@@ -0,0 +1,37 @@
+# Copyright 1999-2015 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/prank/prank-140603.ebuild,v 1.1 2015/03/29 13:52:32 jlec Exp $
+
+EAPI=4
+
+inherit eutils multilib toolchain-funcs
+
+DESCRIPTION="Probabilistic Alignment Kit"
+HOMEPAGE="http://wasabiapp.org/software/prank/"
+SRC_URI="http://wasabiapp.org/download/${PN}/${PN}.source.${PV}.tgz"
+
+LICENSE="GPL-3"
+SLOT="0"
+IUSE=""
+KEYWORDS="~amd64 ~x86"
+
+S="${WORKDIR}/${PN}-msa/src"
+
+src_prepare() {
+       sed \
+               -e "s/\$(LINK)/& \$(LDFLAGS)/" \
+               -e "s:/usr/lib:${EPREFIX}/usr/$(get_libdir):g" \
+               -i Makefile || die
+}
+
+src_compile() {
+       emake \
+               LINK="$(tc-getCXX)" \
+               CXX="$(tc-getCXX)" \
+               CFLAGS="${CFLAGS}" \
+               CXXFLAGS="${CXXFLAGS}"
+}
+
+src_install() {
+       dobin ${PN}
+}