Drop old

Package-Manager: portage-2.2.18/cvs/Linux x86_64
Manifest-Sign-Key: 0xB9D4F231BD1558AB!

diff --git a/sci-biology/muscle/ChangeLog b/sci-biology/muscle/ChangeLog
index 96a439e92c8d1827bf848ba599240ea435cea180..029db5be20cf7c20aea186f189d7763b6a8f8475 100644 (file)
--- a/sci-biology/muscle/ChangeLog
+++ b/sci-biology/muscle/ChangeLog
@@ -1,6 +1,10 @@
 # ChangeLog for sci-biology/muscle
-# Copyright 1999-2010 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/muscle/ChangeLog,v 1.15 2010/07/20 11:54:30 josejx Exp $
+# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/muscle/ChangeLog,v 1.16 2015/03/29 14:51:05 jlec Exp $
+
+  29 Mar 2015; Justin Lecher <jlec@gentoo.org> -muscle-3.6.ebuild,
+  -muscle-3.7.ebuild, metadata.xml, muscle-3.8.31.ebuild:
+  Drop old
 
   20 Jul 2010; Joseph Jezak <josejx@gentoo.org> muscle-3.7-r1.ebuild:
   Marked ppc stable for bug #277980.
@@ -59,4 +63,3 @@
   New multiple sequence alignment package. Provides a great tradeoff between
   runtime and quality for global alignments; quite a bit worse on local
   alignments.
-

diff --git a/sci-biology/muscle/Manifest b/sci-biology/muscle/Manifest
index fc2558e9d9ea4bc9927e20551479482fa561a9b1..056de7cf20f0a5990ed54ca2b5da4ba851e2485e 100644 (file)
--- a/sci-biology/muscle/Manifest
+++ b/sci-biology/muscle/Manifest
@@ -1,21 +1,30 @@
 -----BEGIN PGP SIGNED MESSAGE-----
-Hash: SHA1
+Hash: SHA512
 
-AUX 3.7-bufferoverflow.patch 595 RMD160 ea1634cdf67e0c40425b37146b2a7dbb6a13f0a7 SHA1 682b2bb28f22c234deb77e34b2497f5e59b1cc46 SHA256 2acf33bcf8ebb6ee6c4171fd0dd4407a08a3c4577902c683a948a1b3231a243e
-AUX 3.8.31-make.patch 989 RMD160 22e88148f5701f5d7d6910c5f1bbd86e26220127 SHA1 2f55918397322ffe83464b3da5e3e5d972a40f63 SHA256 f5352a5fc8a792d7af177d1e829a33e59bc39dedb81baf17c6424f8520ea6879
-DIST muscle3.6_src.tar.gz 185267 RMD160 4afda92b982ec2b05853a582479c61a7d8814f51 SHA1 e8a4998ee10a8f067fd1ba63966e32e69da62d36 SHA256 32b818a51f421e1d687f513dc31374a330470950151a5e7df961e64781699431
-DIST muscle3.7_src.tar.gz 189907 RMD160 6eb64afd2032914781f453b925589c35e432b96c SHA1 6a3cbef3a8a00cf230f17bf90592f7108607d103 SHA256 a028f545612f9d260e35909959e98ae7aec552b1eac8806c3ae59cf1b00f7235
-DIST muscle3.8.31_src.tar.gz 515267 RMD160 18c9cf465f330a77d6a06ff9323c311a6f6be662 SHA1 2fe55db73ff4e7ac6d4ca692f8f213d1c5071dac SHA256 43c5966a82133bd7da5921e8142f2f592c2b5f53d802f0527a2801783af809ad
-EBUILD muscle-3.6.ebuild 847 RMD160 8a29fc7b68c5fb0c3680c513ede51aeaeaad4b11 SHA1 c38e5eebcf8f35e430f85f958de35083295ae0f0 SHA256 f3c041cb767be4e858a5854a03ee51e8424cd4197a7c723c4b28a46705a80c67
-EBUILD muscle-3.7-r1.ebuild 930 RMD160 d15d40d6eab6ee1b2e354926ee0f37afd2974cdb SHA1 be7f3d6509dd12ee680b55b9a891d158d4565fd4 SHA256 0379c05b8523067a9f4160278e1bb8e5803df0f0220f2bc0f79f9d276f8f4809
-EBUILD muscle-3.7.ebuild 844 RMD160 1335020b6dcd0b8107165ada30a4c2ce4790ed86 SHA1 36c7c37bed6ac9c26e2a74646a39131630084b92 SHA256 9c6826b8d266d05f79f61c6940b36dbc54adea197eaf19cfad605543f6517d2b
-EBUILD muscle-3.8.31.ebuild 733 RMD160 e4139817205be0c2e14060b03f9de2468675d050 SHA1 c0d18e04a0ff065fff8113fca508628d48346ecd SHA256 cca4af8de32649c613201dbdadb0e5090bcb72eaf5c27652866a50635c806c30
-MISC ChangeLog 2164 RMD160 76510c22d54bad6e6d039ecdf74c5e1785d789e4 SHA1 74f2358b61f52e09620362d78afb0f9e4ff5c8a7 SHA256 6f1b530d479c718af3561ade148ae352a39cd8cc01423f83546c4194a39da95b
-MISC metadata.xml 164 RMD160 2f441200f2672ab5f1efae7cbdb08b284603903c SHA1 61a50baedfd041e663d6c2a41a28b57e22dbb6de SHA256 f0897b09e661dc603041dab249d73253034659189becf1a34cca37a7d51ef72f
+AUX 3.7-bufferoverflow.patch 595 SHA256 2acf33bcf8ebb6ee6c4171fd0dd4407a08a3c4577902c683a948a1b3231a243e SHA512 77b62486bbf59a29f12e7237da573b52ed5b72fc76eb07e5894ab32d5b955b82e0ca2678c6abae5065860faa049cdda84f194e8de2b809572ab9fa32b0bf41ec WHIRLPOOL 73a66c7e74ae767bd9159b30103694fab15c50ae19e1803fa8050b42b8895e66f1c5f70a80b1b266326ba07fcf6de64939395d3cc7a9428c73de64981a52142e
+AUX 3.8.31-make.patch 989 SHA256 f5352a5fc8a792d7af177d1e829a33e59bc39dedb81baf17c6424f8520ea6879 SHA512 e528b032d4e60d2ca22de1129da56125b8915ed288ee25965b2bc5b1d6118d1d589fa632dac9829011a405c3189b8b6b6c056eedde9dd30a9b6a6f572a5e2d2c WHIRLPOOL db552ae2482532c6034c86eb9be71eb99652e1d24e2031545eb5eff7ab558775ae0bcd0f467520df0a6b47ced18d8f163b7fbe83a1b6642118c86a53e8c7a298
+DIST muscle3.7_src.tar.gz 189907 SHA256 a028f545612f9d260e35909959e98ae7aec552b1eac8806c3ae59cf1b00f7235
+DIST muscle3.8.31_src.tar.gz 515267 SHA256 43c5966a82133bd7da5921e8142f2f592c2b5f53d802f0527a2801783af809ad SHA512 2baf2aae354ae1e3f529e627be2ace86e89dd15567e1f642a625b63f08ebe3d4bd7315080c7d786d95e3eda8703545ec74af9fe83ad1523d55d00137fb7274ce WHIRLPOOL daea88aaeaaacf5a2da68484010091ae46c69713659f92f45e5e2096af9e7d8c645d14e5b6c4c8e73e4df35a086dee823fcab6d442cd3881b773fb0113ce897d
+EBUILD muscle-3.7-r1.ebuild 930 SHA256 0379c05b8523067a9f4160278e1bb8e5803df0f0220f2bc0f79f9d276f8f4809 SHA512 52b8763cd3b7f9c948dbfb367725fb6240fec0eda72df38fb3f56369ac5188ac204422ae5ef77ade1c517f4e4c22dc4c990215d2f0ac4f36788874d64b9ac25f WHIRLPOOL 469fef67bbd7f167dc297c55becfb42283a594f86e07e491e73ff15cad3c5b28cf428d86efc1f035993b344465613c6dda003e25e441cabe6613c97db74c3277
+EBUILD muscle-3.8.31.ebuild 717 SHA256 11bd6ce798358e9f0c8c9f12e9c1803b45b221362afb5a405c221bed6b4155ed SHA512 4b928b062941b703e279b53b1d527a75347ae91ec903b45231b2e5bab25bfa7b230dee0bca5af2dcb501537e6891d8fcdcf27489f87d390fd548ffa345ec3ff4 WHIRLPOOL 6acfd8951fceab4459972f673302eccf0803414dfc36d3c38f032a520662c8e684a732b5ae50b29bbda893824cf8d8819e37f3d80512cb759841885f10c229f7
+MISC ChangeLog 2298 SHA256 0faf2ae9cf7cf162fbe151c13ea44c1011811b0abc10b7d51efc8acb0e850384 SHA512 f23bd26e86db3697667ca55c3694c66087123afd4459d05bc4d2cdcdeb2e19cdfa84915f2572e14241c57e609404caa990d17d5f9857a9a1af027f7091a883be WHIRLPOOL ad277ab0a7c6f61dd6a10e900b7258a6f7f246017e4e3321de6f7a35a6edb768df9e3274cea57a1b0e6edcbf3772c556af0e226ee0e6dd830898936c05f9c89e
+MISC metadata.xml 166 SHA256 29b228f683c71345323d841414e410c929a320f34536eb30910498728260c8ac SHA512 51c5345bb1c4466b73e2feac8895c64fc119365e7f2c156702f4c93664d3aba028b3da9daaabf24f61a88220345fca7806771a252e8ae906cac5dec97862c7e0 WHIRLPOOL 211bf955d94fc1d93b12388a2c597a8d440fb5d78f84d59b2549569537098c3525b1fbab707441d62fabe20edcac2fd9ebe09c5d9870f1c9558d7ee90d5db5b3
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diff --git a/sci-biology/muscle/metadata.xml b/sci-biology/muscle/metadata.xml
index 34294c65ca0468b729f2b6e52b812c878ad59893..f17a827e310198336846040c3e61382ed748e991 100644 (file)
--- a/sci-biology/muscle/metadata.xml
+++ b/sci-biology/muscle/metadata.xml
@@ -1,5 +1,5 @@
 <?xml version="1.0" encoding="UTF-8"?>
 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
 <pkgmetadata>
-<herd>sci-biology</herd>
+  <herd>sci-biology</herd>
 </pkgmetadata>

diff --git a/sci-biology/muscle/muscle-3.6.ebuild b/sci-biology/muscle/muscle-3.6.ebuild
deleted file mode 100644 (file)
index f4fedf8..0000000
--- a/sci-biology/muscle/muscle-3.6.ebuild
+++ /dev/null
@@ -1,41 +0,0 @@
-# Copyright 1999-2010 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/muscle/muscle-3.6.ebuild,v 1.6 2010/06/24 19:03:18 jlec Exp $
-
-inherit toolchain-funcs
-
-MY_P="${PN}${PV}_src"
-DESCRIPTION="Multiple sequence comparison by log-expectation"
-HOMEPAGE="http://www.drive5.com/muscle/"
-SRC_URI="http://www.drive5.com/muscle/downloads${PV}/${MY_P}.tar.gz"
-LICENSE="public-domain"
-
-SLOT="0"
-KEYWORDS="amd64 ppc x86"
-IUSE=""
-
-RDEPEND="!sci-libs/libmuscle"
-DEPEND="${RDEPEND}"
-
-S="${WORKDIR}/${MY_P}"
-
-src_unpack() {
-       unpack ${A}
-       sed -i \
-               "s:-static::g" \
-               "${S}/Makefile"
-       sed -i \
-               "/strip/d" \
-               "${S}/Makefile"
-}
-
-src_compile() {
-       emake \
-               GPP="$(tc-getCXX)" \
-               CFLAGS="${CXXFLAGS}" \
-               || die "make failed"
-}
-
-src_install() {
-       DESTTREE="/usr" dobin muscle
-}

diff --git a/sci-biology/muscle/muscle-3.7.ebuild b/sci-biology/muscle/muscle-3.7.ebuild
deleted file mode 100644 (file)
index 61ade0a..0000000
--- a/sci-biology/muscle/muscle-3.7.ebuild
+++ /dev/null
@@ -1,41 +0,0 @@
-# Copyright 1999-2010 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/muscle/muscle-3.7.ebuild,v 1.3 2010/06/24 20:47:35 angelos Exp $
-
-inherit toolchain-funcs
-
-MY_P="${PN}${PV}_src"
-DESCRIPTION="Multiple sequence comparison by log-expectation"
-HOMEPAGE="http://www.drive5.com/muscle/"
-SRC_URI="http://www.drive5.com/muscle/downloads${PV}/${MY_P}.tar.gz"
-
-LICENSE="public-domain"
-SLOT="0"
-KEYWORDS="amd64 ~ppc ~x86"
-IUSE=""
-
-RDEPEND="!sci-libs/libmuscle"
-DEPEND="${RDEPEND}"
-
-S="${WORKDIR}"
-
-src_unpack() {
-       unpack ${A}
-       sed -i \
-               "s:-static::g" \
-               "${S}/Makefile"
-       sed -i \
-               "/strip/d" \
-               "${S}/Makefile"
-}
-
-src_compile() {
-       emake \
-               GPP="$(tc-getCXX)" \
-               CFLAGS="${CXXFLAGS}" \
-               || die "make failed"
-}
-
-src_install() {
-       DESTTREE="/usr" dobin muscle
-}

diff --git a/sci-biology/muscle/muscle-3.8.31.ebuild b/sci-biology/muscle/muscle-3.8.31.ebuild
index cfd0d79ac4c20612333099eaa87e3723d6ae85e9..e38f475716b9b6d43794f9d820ef1af933b9f033 100644 (file)
--- a/sci-biology/muscle/muscle-3.8.31.ebuild
+++ b/sci-biology/muscle/muscle-3.8.31.ebuild
@@ -1,8 +1,8 @@
-# Copyright 1999-2010 Gentoo Foundation
+# Copyright 1999-2015 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/muscle/muscle-3.8.31.ebuild,v 1.1 2010/06/24 19:03:18 jlec Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/muscle/muscle-3.8.31.ebuild,v 1.2 2015/03/29 14:51:05 jlec Exp $
 
-EAPI="3"
+EAPI=5
 
 inherit eutils toolchain-funcs
 
@@ -28,6 +28,6 @@ src_prepare() {
 }
 
 src_install() {
-       dobin "${PN}" || die
-       dodoc *.txt || die
+       dobin "${PN}"
+       dodoc *.txt
 }