sci-biology/HTSeq: Initial addition

Closes: https://github.com/gentoo/sci/pull/814
Package-Manager: Portage-2.3.14, Repoman-2.3.6

diff --git a/sci-biology/HTSeq/HTSeq-0.9.1.ebuild b/sci-biology/HTSeq/HTSeq-0.9.1.ebuild
new file mode 100644 (file)
index 0000000..446bbef
--- /dev/null
+++ b/sci-biology/HTSeq/HTSeq-0.9.1.ebuild
@@ -0,0 +1,31 @@
+# Copyright 1999-2017 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=6
+
+PYTHON_COMPAT=( python2_7 python3_{4,5,6} )
+
+inherit distutils-r1
+
+DESCRIPTION="Python support for SAM/BAM/Bowtie/FASTA/Q/GFF/GTF files"
+HOMEPAGE="https://htseq.readthedocs.io/"
+
+if [[ ${PV} == *9999 ]]; then
+       inherit git-r3
+       EGIT_REPO_URI="https://github.com/simon-anders/htseq.git"
+else
+       SRC_URI="mirror://pypi/${PN:0:1}/${PN}/${P}.tar.gz"
+       KEYWORDS="~amd64"
+fi
+
+LICENSE="GPL-3+"
+SLOT="0"
+
+RDEPEND="
+       dev-python/numpy[${PYTHON_USEDEP}]
+       dev-python/matplotlib[${PYTHON_USEDEP}]
+       sci-biology/pysam[${PYTHON_USEDEP}]"
+DEPEND="
+       ${RDEPEND}
+       >=dev-lang/swig-3.0.8
+       dev-python/cython[${PYTHON_USEDEP}]"

diff --git a/sci-biology/HTSeq/HTSeq-9999.ebuild b/sci-biology/HTSeq/HTSeq-9999.ebuild
new file mode 100644 (file)
index 0000000..446bbef
--- /dev/null
+++ b/sci-biology/HTSeq/HTSeq-9999.ebuild
@@ -0,0 +1,31 @@
+# Copyright 1999-2017 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=6
+
+PYTHON_COMPAT=( python2_7 python3_{4,5,6} )
+
+inherit distutils-r1
+
+DESCRIPTION="Python support for SAM/BAM/Bowtie/FASTA/Q/GFF/GTF files"
+HOMEPAGE="https://htseq.readthedocs.io/"
+
+if [[ ${PV} == *9999 ]]; then
+       inherit git-r3
+       EGIT_REPO_URI="https://github.com/simon-anders/htseq.git"
+else
+       SRC_URI="mirror://pypi/${PN:0:1}/${PN}/${P}.tar.gz"
+       KEYWORDS="~amd64"
+fi
+
+LICENSE="GPL-3+"
+SLOT="0"
+
+RDEPEND="
+       dev-python/numpy[${PYTHON_USEDEP}]
+       dev-python/matplotlib[${PYTHON_USEDEP}]
+       sci-biology/pysam[${PYTHON_USEDEP}]"
+DEPEND="
+       ${RDEPEND}
+       >=dev-lang/swig-3.0.8
+       dev-python/cython[${PYTHON_USEDEP}]"

diff --git a/sci-biology/HTSeq/Manifest b/sci-biology/HTSeq/Manifest
new file mode 100644 (file)
index 0000000..6d90d56
--- /dev/null
+++ b/sci-biology/HTSeq/Manifest
@@ -0,0 +1 @@
+DIST HTSeq-0.9.1.tar.gz 596941 SHA256 af5bba775e3fb45ed4cde64c691ebef36b0bf7a86efd35c884ad0734c27ad485 SHA512 ec3e1ec9cf66918f2afacf7997ab5da02015896ddd97260f5abec8343a9013cf6e857872be38b2cd3bb5bde655abe602a3c22c32448190f32e1a8f1153a19344 WHIRLPOOL da3f1d867f9cfa05e34321f75fb34ef79e943476ee650d4689e320078821703721168bfdd9e46f10f1319cc1006771cd205a80569549d21719d38aea6b0be3a8

diff --git a/sci-biology/HTSeq/metadata.xml b/sci-biology/HTSeq/metadata.xml
new file mode 100644 (file)
index 0000000..e9ba18c
--- /dev/null
+++ b/sci-biology/HTSeq/metadata.xml
@@ -0,0 +1,19 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+       <maintainer type="person">
+               <email>mmokrejs@fold.natur.cuni.cz</email>
+               <name>Martin Mokrejs</name>
+       </maintainer>
+       <maintainer type="project">
+               <email>proxy-maint@gentoo.org</email>
+               <name>Proxy Maintainers</name>
+       </maintainer>
+       <maintainer type="project">
+               <email>sci-biology@gentoo.org</email>
+               <name>Gentoo Biology Project</name>
+       </maintainer>
+       <upstream>
+               <remote-id type="pypi">HTSeq</remote-id>
+       </upstream>
+</pkgmetadata>