--- /dev/null
+
+
+ PROCHECK - Stereochemical Quality of Protein Structures
+ -------------------------------------------------------
+ and AQUA for PROCHECK-NMR
+ -------------------------
+
+ CONFIDENTIALITY AGREEMENT
+ -------------------------
+
+
+
+In regard to the PROCHECK suite of programs, specified in Appendix 1
+herewith and the AQUA suite of programs specified in Appendix 2 herewith
+(the Software) supplied to us, the copyright and other intellectual
+property rights to which belong to the authors, we
+
+ __________________________________________________________________
+
+undertake to the authors that we shall be bound by the following terms and
+conditions:-
+
+1. We will receive the Software and any related documentation in confidence
+and will not use the same except for the purpose of the department's own
+research. The Software will be used only by such of our officers or
+employees to whom it must reasonably be communicated to enable us to
+undertake our research and who agree to be bound by the same confidence.
+The department shall procure and enforce such agreement from its staff for
+the benefit of the authors.
+
+2. The publication of research using the Software must reference
+
+ "Laskowski R A, MacArthur M W, Moss D S & Thornton J M (1993). PROCHECK:
+ a program to check the stereochemical quality of protein
+ structures. J. Appl. Cryst., 26, 283-291."
+
+and
+
+ "Rullmann J A C (1996). AQUA, Computer Program, Department of NMR
+ Spectroscopy, Bijvoet Center for Biomolecular Research, Utrecht
+ University, The Netherlands."
+
+
+3. Research shall take place solely at the department's premises at
+
+ __________________________________________________________________
+
+4. All forms of the Software will be kept in a reasonably secure place to
+prevent unauthorised access.
+
+5. Each copy of the Software or, if not practicable then, any package
+associated therewith shall be suitably marked (and such marking maintained)
+with the following copyright notice: " Copyright 1992 M W MacArthur, R A
+Laskowski, D S Moss, J A C Rullmann & J M Thornton All Rights Reserved".
+
+6. The Software may be modified but any changes made shall be made
+available to the authors.
+
+7. The Software shall be used exclusively for academic teaching and
+research. The Software will not be used for any commercial research or
+research associated with an industrial company.
+
+8. The confidentiality obligation in paragraph one shall not apply:
+
+ (i) to information and data known to the department at the time of
+ receipt hereunder (as evidenced by its written records);
+
+ (ii) to information and data which was at the time of receipt in the
+ public domain or thereafter becomes so through no wrongful act of
+ the department;
+
+ (iii) to information and data which the department receives from a third
+ party not in breach of any obligation of confidentiality owed to
+ the authors.
+
+
+
+Please sign this Undertaking and return a copy of it to indicate that you
+have read, understood and accepted the above terms.
+
+
+
+ For and on behalf of _____________________________
+
+ _________________________________________________
+
+ ..................................................
+
+ Dated ............................................
+
+
+
+
+APPENDIX 1 - DETAILS OF THE PROCHECK SUITE OF PROGRAMS PROVIDED (v.3.4.3)
+---------------------------------------------------------------
+
+Files to be included
+--------------------
+
+ 1. anglen.f }
+ 2. anglen.inc }
+ 3. bplot.f }
+ 4. bplot.inc }
+ 5. brkcln.par }
+ 6. clean.f }
+ 7. gfac2pdb.f }
+ 8. gfac2pdb.inc }
+ 9. mplot.f }
+ 10. mplot.inc } Source program files
+ 11. nb.c }
+ 12. pplot.f }
+ 13. pplot.inc }
+ 14. ps.f }
+ 15. rmsdev.f }
+ 16. rmsdev.inc }
+ 17. secstr.f }
+ 18. sstruc.par }
+ 19. tplot.f }
+ 20. tplot.inc }
+ 21. viol2pdb.f }
+ 22. viol2pdb.inc }
+ 23. vplot.f }
+ 24. vplot.inc }
+ 25. gfac2pdb.scr }
+ 26. procheck.com }
+ 27. procheck.scr }
+ 28. procheck_comp.com }
+ 29. procheck_comp.scr }
+ 30. procheck_nmr.scr }
+ 31. proplot.com }
+ 32. proplot.scr } Script files
+ 33. proplot_comp.scr }
+ 34. proplot_nmr.scr }
+ 35. proplot_comp.com }
+ 36. prosub.com }
+ 37. setup.com }
+ 38. setup.scr }
+ 39. viol2pdb.scr }
+ 40. convax.for }
+ 41. procomp.com } Installation files
+ 42. procomp.scr }
+ 43. maninst.ps }
+ 44. manual.tar.Z } Documentation files
+ 45. nmr_manual.tar.Z }
+ 46. procheck.dat }
+ 47. procheck.prm } Data
+ 48. procheck_comp.prm } files
+ 49. procheck_nmr.prm }
+
+
+APPENDIX 2 - DETAILS OF THE AQUA SUITE OF PROGRAMS PROVIDED (v.0.40)
+-----------------------------------------------------------
+
+Files to be included
+--------------------
+
+Source files:-
+------------
+
+AquaCalc.c AquaCalc.h
+ AquaData.h
+AquaDist.c AquaDist.h
+AquaFiles.c AquaFiles.h
+AquaFuncts.c AquaFuncts.h
+AquaFuncts_biosym.c AquaFuncts_biosym.h
+AquaFuncts_cv.c AquaFuncts_cv.h
+AquaFuncts_io.c AquaFuncts_io.h
+AquaFuncts_pdb.c AquaFuncts_pdb.h
+AquaFuncts_pdbmr.c AquaFuncts_pdbmr.h
+AquaHow.c AquaHow.h
+ AquaMacros.h
+AquaPseudo.c AquaPseudo.h
+AquaStrucset.c AquaStrucset.h
+ AquaTypes.h
+AquaWhat.c AquaWhat.h
+Qext.c Qext.h
+Range.c Range.h
+ cv_subs.h
+
+Script files:-
+------------
+ReadNrv.pm* convDIANAtorsrestr qdbext*
+aqdrst* convDISGEOdistrestr qguessc*
+aqpc* convDISGEOtorsrestr qguessr*
+aqpcsel convMRTABLE qhelp*
+aquanal.pl* convXPLORdistrestr qmodr*
+clean0* convXPLORtorsrestr qsplitr*
+convBIOSYMdistrestr makecmm* qsumm*
+convBIOSYMtorsrestr qconvert* qsumm_aux1*
+convDIANAdistrestr qconvr* qsumm_aux2*
+
+Documentation:-
+-------------
+README models.txt qconvr.txt
+aqpc.txt mr.txt qdbext.txt
+aqua_setup.txt names.txt qext.txt
+biosym.txt overview.txt qhelp.txt
+chains.txt perl.txt qsumm.txt
+conversion.txt procheck.txt restraint_format.txt
+dbas.txt qanal.txt setup.txt
+intro.txt qclean.txt torsion.txt
+log.txt qconvert.txt xplor.txt
+
+Extras:-
+------
+joinpdb* splitpdb*
+
+
+
+Please complete the above form, sign it, and then send or fax to:-
+
+
+Roman Laskowski
+European Bioinformatics Institute,
+Wellcome Trust Genome Campus,
+Hinxton,
+Cambridge, CB10 1SD,
+United Kingdom
+
+Fax:- +44 (0)1223 494 468
+
+If you have any problems either installing the software or running it,
+please e-mail your problems to:-
+
+ roman@ebi.ac.uk
+
+Questions about AQUA should be directed to Ton Rullmann at
+
+ rull@nmr.chem.ruu.nl
+
projects / gentoo.git / commitdiff