+++ /dev/null
-# Copyright 1999-2017 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=6
-
-inherit toolchain-funcs
-
-DESCRIPTION="Prototype ncRNA genefinder"
-HOMEPAGE="http://selab.janelia.org/software.html"
-SRC_URI="mirror://gentoo/${P}.tar.bz2"
-
-LICENSE="GPL-2"
-SLOT="0"
-KEYWORDS="~amd64 ~x86"
-IUSE=""
-
-RDEPEND="
- dev-lang/perl
- sci-biology/hmmer"
-DEPEND="${RDEPEND}"
-
-PATCHES=(
- "${FILESDIR}"/${P}-glibc-2.10.patch
- "${FILESDIR}"/${P}-ldflags.patch
-)
-
-src_prepare() {
- default
- sed \
- -e "s:^CC.*:CC = $(tc-getCC):" \
- -e "/^AR/s:ar:$(tc-getAR):g" \
- -e "/^RANLIB/s:ranlib:$(tc-getRANLIB):g" \
- -e "/CFLAGS/s:=.*$:= ${CFLAGS}:" \
- -i {src,squid,squid02}/Makefile || die
- rm -v squid*/*.a || die
-}
-
-src_compile() {
- local d
- for d in squid squid02 src; do
- emake -C ${d}
- done
-}
-
-src_install() {
- dobin src/{cfgbuild,eqrna,eqrna_sample,rnamat_main} scripts/*
-
- newdoc 00README README
- dodoc -r documentation/.
-
- insinto /usr/share/${PN}/data
- doins -r lib/.
- insinto /usr/share/${PN}/demos
- doins -r Demos/.
-
- # Sets the path to the QRNA data files
- doenvd "${FILESDIR}"/26qrna
-}