sci-biology/goby: Clean up old.

Package-Manager: portage-2.2.26

diff --git a/sci-biology/goby/goby-1.9.7.3.ebuild b/sci-biology/goby/goby-1.9.7.3.ebuild
deleted file mode 100644 (file)
index 20622d4..0000000
--- a/sci-biology/goby/goby-1.9.7.3.ebuild
+++ /dev/null
@@ -1,57 +0,0 @@
-# Copyright 1999-2011 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Id$
-
-EAPI=4
-
-ESVN_REPO_URI="https://pbtech-vc.med.cornell.edu/public/svn/icb/trunk/goby"
-EANT_GENTOO_CLASSPATH="commons-logging,commons-lang-2.1,commons-io-1,protobuf,fastutil-5.0,log4j,jsap,commons-configuration,commons-math-2"
-EANT_GENTOO_CLASSPATH_EXTRA="lib/icb-utils.jar:lib/edu.mssm.crover.cli.jar:lib/JRI.jar:lib/dsiutils-1.0.12.jar"
-
-JAVA_ANT_REWRITE_CLASSPATH="true"
-
-#inherit java-pkg-2 java-ant-2 subversion
-inherit java-pkg-2 java-ant-2
-
-MY_P="${PN}_${PV}"
-
-DESCRIPTION="A DNA sequencing data management framework"
-HOMEPAGE="http://campagnelab.org/software/goby/"
-SRC_URI="http://chagall.med.cornell.edu/goby/releases/archive/release-${MY_P}/${MY_P}-src.zip
-       http://chagall.med.cornell.edu/goby/releases/archive/release-${MY_P}/${MY_P}-deps.zip"
-
-LICENSE="GPL-3 LGPL-3"
-SLOT="0"
-IUSE="+cpp"
-KEYWORDS="~amd64 ~x86"
-
-COMMON_DEPS="dev-java/commons-logging
-       dev-java/commons-lang:2.1
-       dev-java/commons-io:1
-       dev-libs/protobuf[java]
-       dev-java/fastutil:5.0
-       dev-java/log4j
-       dev-java/jsap
-       dev-java/commons-configuration
-       dev-java/commons-math:2"
-DEPEND=">=virtual/jdk-1.6
-       ${COMMON_DEPS}"
-RDEPEND=">=virtual/jre-1.6
-       ${COMMON_DEPS}
-       cpp? ( ~sci-biology/goby-cpp-${PV} )"
-
-S="${WORKDIR}/${MY_P}"
-
-src_prepare() {
-       sed -i '/sge/ d' build.xml || die
-       java-pkg-2_src_prepare
-}
-
-src_install() {
-       java-pkg_dojar goby*.jar
-       java-pkg_dolauncher goby --jar goby.jar
-
-       insinto /usr/share/${PN}
-       doins -r python
-       dodoc CHANGES.txt
-}

diff --git a/sci-biology/goby/goby-1.9.8.1.ebuild b/sci-biology/goby/goby-1.9.8.1.ebuild
deleted file mode 100644 (file)
index 5039b96..0000000
--- a/sci-biology/goby/goby-1.9.8.1.ebuild
+++ /dev/null
@@ -1,57 +0,0 @@
-# Copyright 1999-2012 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Id$
-
-EAPI=4
-
-ESVN_REPO_URI="https://pbtech-vc.med.cornell.edu/public/svn/icb/trunk/goby"
-EANT_GENTOO_CLASSPATH="commons-logging,commons-lang-2.1,commons-io-1,protobuf,fastutil-5.0,log4j,jsap,commons-configuration,commons-math-2"
-EANT_GENTOO_CLASSPATH_EXTRA="lib/icb-utils.jar:lib/edu.mssm.crover.cli.jar:lib/JRI.jar:lib/dsiutils-1.0.12.jar"
-
-JAVA_ANT_REWRITE_CLASSPATH="true"
-
-#inherit java-pkg-2 java-ant-2 subversion
-inherit java-pkg-2 java-ant-2
-
-MY_P="${PN}_${PV}"
-
-DESCRIPTION="A DNA sequencing data management framework"
-HOMEPAGE="http://campagnelab.org/software/goby/"
-SRC_URI="http://chagall.med.cornell.edu/goby/releases/archive/release-${MY_P}/${MY_P}-src.zip
-       http://chagall.med.cornell.edu/goby/releases/archive/release-${MY_P}/${MY_P}-deps.zip"
-
-LICENSE="GPL-3 LGPL-3"
-SLOT="0"
-IUSE="+cpp"
-KEYWORDS="~amd64 ~x86"
-
-COMMON_DEPS="dev-java/commons-logging
-       dev-java/commons-lang:2.1
-       dev-java/commons-io:1
-       dev-libs/protobuf[java]
-       dev-java/fastutil:5.0
-       dev-java/log4j
-       dev-java/jsap
-       dev-java/commons-configuration
-       dev-java/commons-math:2"
-DEPEND=">=virtual/jdk-1.6
-       ${COMMON_DEPS}"
-RDEPEND=">=virtual/jre-1.6
-       ${COMMON_DEPS}
-       cpp? ( ~sci-biology/goby-cpp-${PV} )"
-
-S="${WORKDIR}/${MY_P}"
-
-src_prepare() {
-       sed -i '/sge/ d' build.xml || die
-       java-pkg-2_src_prepare
-}
-
-src_install() {
-       java-pkg_dojar goby*.jar
-       java-pkg_dolauncher goby --jar goby.jar
-
-       insinto /usr/share/${PN}
-       doins -r python
-       dodoc CHANGES.txt
-}