sci-biology/wgs-assembler: remove old
authorMichael Mair-Keimberger <m.mairkeimberger@gmail.com>
Mon, 21 May 2018 08:10:29 +0000 (10:10 +0200)
committerAaron Bauman <bman@gentoo.org>
Mon, 21 May 2018 17:02:41 +0000 (13:02 -0400)
Closes: https://github.com/gentoo/gentoo/pull/8512

sci-biology/wgs-assembler/wgs-assembler-7.0-r1.ebuild [deleted file]

diff --git a/sci-biology/wgs-assembler/wgs-assembler-7.0-r1.ebuild b/sci-biology/wgs-assembler/wgs-assembler-7.0-r1.ebuild
deleted file mode 100644 (file)
index 066654d..0000000
+++ /dev/null
@@ -1,67 +0,0 @@
-# Copyright 1999-2017 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=4
-
-inherit eutils toolchain-funcs
-
-DESCRIPTION="The Celera de novo whole-genome shotgun DNA sequence assembler, aka CABOG"
-HOMEPAGE="https://sourceforge.net/projects/wgs-assembler/"
-SRC_URI="mirror://sourceforge/${PN}/wgs-${PV}.tar.bz2"
-
-LICENSE="GPL-2"
-SLOT="0"
-KEYWORDS="amd64 x86"
-IUSE="static-libs"
-
-DEPEND="
-       x11-libs/libXt
-       !x11-terms/terminator"
-RDEPEND="${DEPEND}
-       app-shells/tcsh
-       dev-perl/Log-Log4perl"
-
-S="${WORKDIR}/wgs-${PV}"
-
-src_prepare() {
-       epatch \
-               "${FILESDIR}"/${P}-build.patch
-       tc-export CC CXX
-}
-
-src_configure() {
-       cd "${S}/kmer"
-       ./configure.sh || die
-}
-
-src_compile() {
-       # not really an install target
-       emake -C kmer -j1 install
-       emake -C src -j1 SITE_NAME=LOCAL
-}
-
-src_install() {
-       OSTYPE=$(uname)
-       MACHTYPE=$(uname -m)
-       MACHTYPE=${MACHTYPE/x86_64/amd64}
-       MY_S="${OSTYPE}-${MACHTYPE}"
-       sed -i 's|#!/usr/local/bin/|#!/usr/bin/env |' $(find $MY_S -type f) || die
-
-       sed -i '/sub getBinDirectory ()/ a return "/usr/bin";' ${MY_S}/bin/runCA* || die
-       sed -i '/sub getBinDirectoryShellCode ()/ a return "bin=/usr/bin\n";' ${MY_S}/bin/runCA* || die
-       sed -i '1 a use lib "/usr/share/'${PN}'/lib";' $(find $MY_S -name '*.p*') || die
-
-       dobin kmer/${MY_S}/bin/*
-       insinto /usr/$(get_libdir)/${PN}
-       use static-libs && doins kmer/${MY_S}/lib/*
-
-       insinto /usr/include/${PN}
-       doins kmer/${MY_S}/include/*
-
-       insinto /usr/share/${PN}/lib
-       doins -r ${MY_S}/bin/TIGR
-       rm -rf ${MY_S}/bin/TIGR || die
-       dobin ${MY_S}/bin/*
-       use static-libs && dolib.a ${MY_S}/lib/*
-       dodoc README
-}