-# Copyright 1999-2012 Gentoo Foundation
+# Copyright 1999-2017 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Id$
-EAPI=4
+EAPI=6
-inherit eutils toolchain-funcs
+inherit toolchain-funcs
DESCRIPTION="Prototype ncRNA genefinder"
HOMEPAGE="http://selab.janelia.org/software.html"
LICENSE="GPL-2"
SLOT="0"
-KEYWORDS="amd64 ~ppc x86"
+KEYWORDS="~amd64 ~x86"
IUSE=""
RDEPEND="
sci-biology/hmmer"
DEPEND="${RDEPEND}"
+PATCHES=(
+ "${FILESDIR}"/${P}-glibc-2.10.patch
+ "${FILESDIR}"/${P}-ldflags.patch
+)
+
src_prepare() {
- epatch \
- "${FILESDIR}"/${P}-glibc-2.10.patch \
- "${FILESDIR}"/${P}-ldflags.patch
+ default
sed \
-e "s:^CC.*:CC = $(tc-getCC):" \
-e "/^AR/s:ar:$(tc-getAR):g" \
-e "/^RANLIB/s:ranlib:$(tc-getRANLIB):g" \
-e "/CFLAGS/s:=.*$:= ${CFLAGS}:" \
-i {src,squid,squid02}/Makefile || die
- rm -v squid*/*.a
+ rm -v squid*/*.a || die
}
src_compile() {
- local dir
- for dir in squid squid02 src; do
- emake -C ${dir}
+ local d
+ for d in squid squid02 src; do
+ emake -C ${d}
done
}
-src_install () {
+src_install() {
dobin src/{cfgbuild,eqrna,eqrna_sample,rnamat_main} scripts/*
newdoc 00README README
- insinto /usr/share/doc/${PF}
- doins documentation/*
+ dodoc -r documentation/.
insinto /usr/share/${PN}/data
- doins lib/*
+ doins -r lib/.
insinto /usr/share/${PN}/demos
- doins Demos/*
+ doins -r Demos/.
- # Sets the path to the QRNA data files.
+ # Sets the path to the QRNA data files
doenvd "${FILESDIR}"/26qrna
}