Version Bump; add py3 and pypy support

Package-Manager: portage-2.2.17/cvs/Linux x86_64
Manifest-Sign-Key: 0xB9D4F231BD1558AB!

diff --git a/sci-biology/biopython/ChangeLog b/sci-biology/biopython/ChangeLog
index 8b94d92d48fed1cf5d12d5525edc85ec7e0868e9..c7671622e36e450c434558b094e4e38ca361bfa5 100644 (file)
--- a/sci-biology/biopython/ChangeLog
+++ b/sci-biology/biopython/ChangeLog
@@ -1,6 +1,11 @@
 # ChangeLog for sci-biology/biopython
-# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/biopython/ChangeLog,v 1.76 2014/06/03 06:54:27 jlec Exp $
+# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/biopython/ChangeLog,v 1.77 2015/03/03 16:01:46 jlec Exp $
+
+*biopython-1.65 (03 Mar 2015)
+
+  03 Mar 2015; Justin Lecher <jlec@gentoo.org> +biopython-1.65.ebuild:
+  Version Bump; add py3 and pypy support
 
 *biopython-1.64 (03 Jun 2014)
 

diff --git a/sci-biology/biopython/Manifest b/sci-biology/biopython/Manifest
index 10cf7354f522fddc3c1a1190b07fd34ddbb5061d..5044c50ec70977b0dfe6b8754495267283fb2486 100644 (file)
--- a/sci-biology/biopython/Manifest
+++ b/sci-biology/biopython/Manifest
@@ -12,6 +12,7 @@ DIST biopython-1.61.tar.gz 10557825 SHA256 61ec95432f085277da90cde811feee78ced8c
 DIST biopython-1.62.tar.gz 11389349 SHA256 b056414028c8cc0eea3de20d740f7a12ad0813b705de7dd454deec8f9ede52c6 SHA512 0178fd2c2e7b5e9a6cf05e8b8567bb0c1a93e9b05d5faa9802e0e2b0d59fc5e2ce9786c38cbbd00be5b35e4e4a3b41869e774a50cbbcdf6b34788c873cf0f3f2 WHIRLPOOL 63f61243581afee07cd9295989cb90b2221588e066eb1d5695da4b75fcd0abc95a9341ce07a8ffdfc3e85afdc6002582c589ac39e36e98ca4c8a257e63826351
 DIST biopython-1.63.tar.gz 11506485 SHA256 643b92debdfe7fea8771749dee24fb68733232b6e3c02ce94e568a724cc40658 SHA512 d5ef9be40ccf57c35dc7ecdc55c9bc99b0ee6af896584fc029b16e22c1eb5a5cf7d68146635f32e252130fe193998841ac39dc9d96a5511547ba70fc38f566b3 WHIRLPOOL ec9a20264266b6412d8a793ed18bbebf1633d4f6123593b542fa14d00018097b490bf9b837cb186cf30216f8db97e3063e23e565279890cef28011684a2c8536
 DIST biopython-1.64.tar.gz 11671170 SHA256 f79c4f4a7abc6a73b546f2177f041e5d27f68610be8685065b7180d21ec78916 SHA512 f744eee08e4eaa63836ff8fbc56be4d70659d1e36b52c5eed517001bd9d5e64b1d5f3f1c9879c1e82318ff981b3bd6b8d50942415c40b0e855df5aec41ab3dc6 WHIRLPOOL 1f2c4478109d90f73fdc7325c1d298d9f2508f6257ecaf5d3bd8a38bf51019ff596da57665fc2d480eb006b628ee123934c661a1da1746fd8ba27e9e6001dcaa
+DIST biopython-1.65.tar.gz 12641342 SHA256 463cc81db84e9bfcdfb15629511c81ed556a6c0287e670dbfe80f03c65d2a88e SHA512 2a9c6a89d0279374c243938d13bfdd6f2b124a08afbfb0c262e1e4827c48a141fb9941f4cdb960f76b523f0ac152095a8c6ea566d9b469ce9daf8a7e7993f7af WHIRLPOOL 40757938c0eb7e30c9609ef5aa2d397fa21ad92cd20c9b6300cde1b381a0e6c21e4ebb7f4d25bf02651789437d7d86341154b907ccc0007759c17939f2e29da2
 EBUILD biopython-1.57.ebuild 1423 SHA256 9096221918c30adbd01157581f42e61286cb7d20b8ad52ad52756d8c7de155df SHA512 782410b327703e9d6d612c22daf4c977e06051995e7d7a9763690ef101d0261e0689b7787a27ae0a205d26a01df09fa6b98e2d4bc6047856b35917bb87a3a262 WHIRLPOOL a58be3d9ed1aa3fee35d2fbf5ad208b82a1e0ff6067aa989a21989f9f45d5fe6020eb4ee639cdd2ab87820dbb5f52bdcb53aebe300e91c45584f000b914c41de
 EBUILD biopython-1.58.ebuild 1426 SHA256 f81164aafdb8b60963bbfc169fe103ca182c3d13fcfac1ebe1de62c08d4267bf SHA512 d03df5653dc6265bcd90bccec157a4e28e455bf0aa7473c2ca3ae72af059ea0c1100d4274ac140595259aeff98e3540b499905e480ab310e9e664bf149586695 WHIRLPOOL 79078204643918d609d02a586bad87d04bd58dce14b9f503472ba1fecade6a084476e78c980bcaa46c64f5a7db150c7408aa7aeea07ae78407d93dfdc69287cd
 EBUILD biopython-1.59.ebuild 1426 SHA256 062a763ab89f982dad4bc36d358359a1d80fc64a79cae5f7ab0ddc797edcf4c3 SHA512 50cba2bac1b5379b673f6ff82c8607195bc33441156b94f914938a1fe0aaff2e1894077eaacc158a7e14ed10598a29f22960460490d2f25fac3ad6a00faa646f WHIRLPOOL 477f06e99a07c30773c388134db9492ae02a0a1b4626af2fd281ced42694ea445b360d10b0cfca5fa5de03a49fb39ab87ed54670ec076147725a602ba45c66bc
@@ -21,24 +22,25 @@ EBUILD biopython-1.62.ebuild 1286 SHA256 1c619ca81e8be0769789fbcabcfcbade48b5f03
 EBUILD biopython-1.63-r1.ebuild 1435 SHA256 6ba5a007554d20dc4562aec65e603707c9e478a79d0dbb298e9e65c605169edf SHA512 ce6c6fd7bf5b17409f0a1262bdf94b0b92b12aa5253d316fb121bf59a3b42ae186f2d16e653168d37dce436a9a1abe8fb6bc71ed837d935c45f2f7284790b5be WHIRLPOOL f218436fa1ef2c22bbf1c9a322ec16560775c4fb1c5f2aa18e9adba275f99e1e78ca5532624040537e33d91e0fc9d38c6bc058d55b3db392918aad13b0a5d676
 EBUILD biopython-1.63.ebuild 1330 SHA256 93a4b8c94f18685e17c9e0cee0d9bb75dd3e3e2d36eb8377c05cc893278870dc SHA512 73b174abff04e6de56c4a8fc011e7cb7f448c5baf2fba4f55477cd79047306e47112b5c4e6aad84f6828ecfcb7691def0baac6b5ede22838aee00eae09c4e50c WHIRLPOOL 0cf0dfedb89fd0e0a3ccdc7da65f475198ce96f13e87ceb23ce6ddade0c5fdb49ffc59e30085c04972f5ba9998a2dff0e4d332c88a65242097cd24af29044074
 EBUILD biopython-1.64.ebuild 1324 SHA256 fc862a248eba42b2e5e65a341ffadcf0d921a0170b2101a879f840ca41e1df75 SHA512 580c7265124a2facd3dd48fa9c7f88bbfa1f860d0e6c558d925b3c7b5527db65b063af9ee3210aa7e27a354bb510d328b00a21d3e94af1f687597d337abcf0e8 WHIRLPOOL 9f680f68f965f57636231a859c93f8396093676eca802c278e789e929096ac4bd6aec0d78a3371cb71e06919adafcac9d7ef92eb47f608cb17ac78a4066c1bde
-MISC ChangeLog 11978 SHA256 538c88c02464167d8145bf205bb503d07cf9204db26cc25db84c6d9a5535eca4 SHA512 bf629357a36cd0953671624c582a3493206af8f89653a4539d8434bd6967605a03f9b4303394cad7cb0852048e55e27d6b32742ce1fba810bc7c95ca898ae363 WHIRLPOOL 7f942bae42a96c7073f3f5b0eec7ec870508eb4b725e144377d7a6e56edadba8a452e19c705411b513404e6cd590cc9f0f9cf067f63eea22316c0bdd161b032c
+EBUILD biopython-1.65.ebuild 1466 SHA256 d14eca1b7feb162cc2df8f0707acd12550ec709a1e76e92a9ab9116f1420be1d SHA512 f3534a7febf1761b3993126fe369ce909014502f592a11d8fc26ff0ba6cced58cd2b64e62fd0ce201259f7f36fae28464b519a8c9495b31304a8868d00f6bd01 WHIRLPOOL c39085a433b935fceb3ec2277f6270dfbabb2b24a54db77550dae2ab5c4671ff3f394313e4368fec6a996fa1c786b346ace6090af35e1c417f0c672560b8ce60
+MISC ChangeLog 12122 SHA256 6c7cea9af676a84209a16a941682afe451ed4984d6ed202fff143b052e926069 SHA512 409dc93386a840251f5562995160ca994dd5d70628356e397566ef354f12324f75f699e041ef1880ccf7b9085eaeb398d9130530178db08899a5c9d78a67ff26 WHIRLPOOL 2f616da4495250a073bbb53b552a6d63508be55376ee8ae52caf8513b263a77f2ba69c07e9be48d7695caedc6d853cf9b71311b768fff4db8572d59fdeb49d71
 MISC metadata.xml 166 SHA256 29b228f683c71345323d841414e410c929a320f34536eb30910498728260c8ac SHA512 51c5345bb1c4466b73e2feac8895c64fc119365e7f2c156702f4c93664d3aba028b3da9daaabf24f61a88220345fca7806771a252e8ae906cac5dec97862c7e0 WHIRLPOOL 211bf955d94fc1d93b12388a2c597a8d440fb5d78f84d59b2549569537098c3525b1fbab707441d62fabe20edcac2fd9ebe09c5d9870f1c9558d7ee90d5db5b3
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diff --git a/sci-biology/biopython/biopython-1.65.ebuild b/sci-biology/biopython/biopython-1.65.ebuild
new file mode 100644 (file)
index 0000000..0beaaac
--- /dev/null
+++ b/sci-biology/biopython/biopython-1.65.ebuild
@@ -0,0 +1,51 @@
+# Copyright 1999-2015 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/biopython/biopython-1.65.ebuild,v 1.1 2015/03/03 16:01:46 jlec Exp $
+
+EAPI=5
+
+PYTHON_COMPAT=( python2_7 python3_{3,4} pypy )
+
+inherit distutils-r1 eutils
+
+DESCRIPTION="Python modules for computational molecular biology"
+HOMEPAGE="http://www.biopython.org/ http://pypi.python.org/pypi/biopython/"
+SRC_URI="http://www.biopython.org/DIST/${P}.tar.gz"
+
+LICENSE="HPND"
+SLOT="0"
+KEYWORDS="~amd64 ~ppc ~x86 ~amd64-linux ~x86-linux"
+IUSE=""
+
+RDEPEND="
+       dev-python/matplotlib[$(python_gen_usedep 'python*')]
+       dev-python/networkx[$(python_gen_usedep 'python*')]
+       dev-python/numpy[$(python_gen_usedep 'python*')]
+       dev-python/rdflib[$(python_gen_usedep 'python*')]
+       dev-python/pygraphviz[$(python_gen_usedep 'python2*')]
+       dev-python/reportlab[$(python_gen_usedep 'python*')]
+       media-gfx/pydot[$(python_gen_usedep 'python2*')]
+       "
+DEPEND="${RDEPEND}
+       sys-devel/flex"
+
+DOCS=( CONTRIB DEPRECATED NEWS README Doc/. )
+
+python_test() {
+       [[ ${EPYTHON} == pypy ]] && return
+       cd Tests || die
+       ${PYTHON} run_tests.py || die
+}
+
+python_install_all() {
+       distutils-r1_python_install_all
+
+       dodir /usr/share/${PN}
+       cp -r --preserve=mode Scripts Tests "${ED}"/usr/share/${PN} || die
+}
+
+pkg_postinst() {
+       elog "For database support you need to install:"
+       optfeature "MySQL" dev-python/mysql-python
+       optfeature "PostGreSQL" dev-python/psycopg
+}