sci-chemistry/gromacs: use HTTPS for GitHub and doc links

Package-Manager: Portage-2.3.6, Repoman-2.3.3

diff --git a/sci-chemistry/gromacs/gromacs-2016.1.ebuild b/sci-chemistry/gromacs/gromacs-2016.1.ebuild
index a48850c45e4913bee8a21b38222d30985bb9bdb5..7e426ddfdf5ac84f787e2ec2eb82e669c57abc6d 100644 (file)
--- a/sci-chemistry/gromacs/gromacs-2016.1.ebuild
+++ b/sci-chemistry/gromacs/gromacs-2016.1.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2016 Gentoo Foundation
+# Copyright 1999-2017 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
 
 EAPI=6
@@ -10,7 +10,7 @@ inherit bash-completion-r1 cmake-utils cuda eutils multilib readme.gentoo-r1 too
 if [[ $PV = *9999* ]]; then
        EGIT_REPO_URI="git://git.gromacs.org/gromacs.git
                https://gerrit.gromacs.org/gromacs.git
-               git://github.com/gromacs/gromacs.git
+               https://github.com/gromacs/gromacs.git
                http://repo.or.cz/r/gromacs.git"
        [[ $PV = 9999 ]] && EGIT_BRANCH="master" || EGIT_BRANCH="release-${PV:0:4}"
        inherit git-r3
@@ -270,7 +270,7 @@ pkg_postinst() {
        einfo
        einfo  "Please read and cite:"
        einfo  "Gromacs 4, J. Chem. Theory Comput. 4, 435 (2008). "
-       einfo  "http://dx.doi.org/10.1021/ct700301q"
+       einfo  "https://dx.doi.org/10.1021/ct700301q"
        einfo
        readme.gentoo_print_elog
 }

diff --git a/sci-chemistry/gromacs/gromacs-2016.2.ebuild b/sci-chemistry/gromacs/gromacs-2016.2.ebuild
index f1c7d722ab5d77c96f2211df59fde77c94ee6f24..3b371d273088bce54960254b8f6fc4704b99843a 100644 (file)
--- a/sci-chemistry/gromacs/gromacs-2016.2.ebuild
+++ b/sci-chemistry/gromacs/gromacs-2016.2.ebuild
@@ -10,7 +10,7 @@ inherit bash-completion-r1 cmake-utils cuda eutils multilib readme.gentoo-r1 too
 if [[ $PV = *9999* ]]; then
        EGIT_REPO_URI="git://git.gromacs.org/gromacs.git
                https://gerrit.gromacs.org/gromacs.git
-               git://github.com/gromacs/gromacs.git
+               https://github.com/gromacs/gromacs.git
                http://repo.or.cz/r/gromacs.git"
        [[ $PV = 9999 ]] && EGIT_BRANCH="master" || EGIT_BRANCH="release-${PV:0:4}"
        inherit git-r3
@@ -269,7 +269,7 @@ pkg_postinst() {
        einfo
        einfo  "Please read and cite:"
        einfo  "Gromacs 4, J. Chem. Theory Comput. 4, 435 (2008). "
-       einfo  "http://dx.doi.org/10.1021/ct700301q"
+       einfo  "https://dx.doi.org/10.1021/ct700301q"
        einfo
        readme.gentoo_print_elog
 }

diff --git a/sci-chemistry/gromacs/gromacs-2016.3.ebuild b/sci-chemistry/gromacs/gromacs-2016.3.ebuild
index 26cd4442ff2fbb13a73bb01eb0887d062b382dda..b361f69c44f433e038b2f783eb5ea3386f8248a6 100644 (file)
--- a/sci-chemistry/gromacs/gromacs-2016.3.ebuild
+++ b/sci-chemistry/gromacs/gromacs-2016.3.ebuild
@@ -10,7 +10,7 @@ inherit bash-completion-r1 cmake-utils cuda eutils multilib readme.gentoo-r1 too
 if [[ $PV = *9999* ]]; then
        EGIT_REPO_URI="git://git.gromacs.org/gromacs.git
                https://gerrit.gromacs.org/gromacs.git
-               git://github.com/gromacs/gromacs.git
+               https://github.com/gromacs/gromacs.git
                http://repo.or.cz/r/gromacs.git"
        [[ $PV = 9999 ]] && EGIT_BRANCH="master" || EGIT_BRANCH="release-${PV:0:4}"
        inherit git-r3
@@ -269,7 +269,7 @@ pkg_postinst() {
        einfo
        einfo  "Please read and cite:"
        einfo  "Gromacs 4, J. Chem. Theory Comput. 4, 435 (2008). "
-       einfo  "http://dx.doi.org/10.1021/ct700301q"
+       einfo  "https://dx.doi.org/10.1021/ct700301q"
        einfo
        readme.gentoo_print_elog
 }

diff --git a/sci-chemistry/gromacs/gromacs-2016.9999.ebuild b/sci-chemistry/gromacs/gromacs-2016.9999.ebuild
index a48850c45e4913bee8a21b38222d30985bb9bdb5..7e426ddfdf5ac84f787e2ec2eb82e669c57abc6d 100644 (file)
--- a/sci-chemistry/gromacs/gromacs-2016.9999.ebuild
+++ b/sci-chemistry/gromacs/gromacs-2016.9999.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2016 Gentoo Foundation
+# Copyright 1999-2017 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
 
 EAPI=6
@@ -10,7 +10,7 @@ inherit bash-completion-r1 cmake-utils cuda eutils multilib readme.gentoo-r1 too
 if [[ $PV = *9999* ]]; then
        EGIT_REPO_URI="git://git.gromacs.org/gromacs.git
                https://gerrit.gromacs.org/gromacs.git
-               git://github.com/gromacs/gromacs.git
+               https://github.com/gromacs/gromacs.git
                http://repo.or.cz/r/gromacs.git"
        [[ $PV = 9999 ]] && EGIT_BRANCH="master" || EGIT_BRANCH="release-${PV:0:4}"
        inherit git-r3
@@ -270,7 +270,7 @@ pkg_postinst() {
        einfo
        einfo  "Please read and cite:"
        einfo  "Gromacs 4, J. Chem. Theory Comput. 4, 435 (2008). "
-       einfo  "http://dx.doi.org/10.1021/ct700301q"
+       einfo  "https://dx.doi.org/10.1021/ct700301q"
        einfo
        readme.gentoo_print_elog
 }

diff --git a/sci-chemistry/gromacs/gromacs-2016.ebuild b/sci-chemistry/gromacs/gromacs-2016.ebuild
index 5ab82a3f0e5780281306926a4e1047939fc1ad39..84f5c56a6aae53e127d7928602b460bedeb89fc6 100644 (file)
--- a/sci-chemistry/gromacs/gromacs-2016.ebuild
+++ b/sci-chemistry/gromacs/gromacs-2016.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2016 Gentoo Foundation
+# Copyright 1999-2017 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
 
 EAPI=6
@@ -10,7 +10,7 @@ inherit bash-completion-r1 cmake-utils cuda eutils multilib readme.gentoo-r1 too
 if [[ $PV = *9999* ]]; then
        EGIT_REPO_URI="git://git.gromacs.org/gromacs.git
                https://gerrit.gromacs.org/gromacs.git
-               git://github.com/gromacs/gromacs.git
+               https://github.com/gromacs/gromacs.git
                http://repo.or.cz/r/gromacs.git"
        [[ $PV = 9999 ]] && EGIT_BRANCH="master" || EGIT_BRANCH="release-${PV:0:1}-${PV:2:1}"
        inherit git-r3
@@ -267,7 +267,7 @@ pkg_postinst() {
        einfo
        einfo  "Please read and cite:"
        einfo  "Gromacs 4, J. Chem. Theory Comput. 4, 435 (2008). "
-       einfo  "http://dx.doi.org/10.1021/ct700301q"
+       einfo  "https://dx.doi.org/10.1021/ct700301q"
        einfo
        readme.gentoo_print_elog
 }

diff --git a/sci-chemistry/gromacs/gromacs-4.6.9999.ebuild b/sci-chemistry/gromacs/gromacs-4.6.9999.ebuild
index ea86feded3c2159899f4a7db511dfec5f7e05f2f..082685525590c4b9e5aa9f01bcb4410213bb1ef7 100644 (file)
--- a/sci-chemistry/gromacs/gromacs-4.6.9999.ebuild
+++ b/sci-chemistry/gromacs/gromacs-4.6.9999.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2016 Gentoo Foundation
+# Copyright 1999-2017 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
 
 EAPI=6
@@ -13,7 +13,7 @@ inherit bash-completion-r1 cmake-utils cuda eutils multilib readme.gentoo-r1 too
 if [[ $PV = *9999* ]]; then
        EGIT_REPO_URI="git://git.gromacs.org/gromacs.git
                https://gerrit.gromacs.org/gromacs.git
-               git://github.com/gromacs/gromacs.git
+               https://github.com/gromacs/gromacs.git
                http://repo.or.cz/r/gromacs.git"
        EGIT_BRANCH="release-4-6"
        inherit git-r3
@@ -251,7 +251,7 @@ pkg_postinst() {
        einfo
        einfo  "Please read and cite:"
        einfo  "Gromacs 4, J. Chem. Theory Comput. 4, 435 (2008). "
-       einfo  "http://dx.doi.org/10.1021/ct700301q"
+       einfo  "https://dx.doi.org/10.1021/ct700301q"
        if use offensive; then
                einfo
                einfo  $(g_luck)

diff --git a/sci-chemistry/gromacs/gromacs-5.0.4.ebuild b/sci-chemistry/gromacs/gromacs-5.0.4.ebuild
index 47ca2bf507d5e391e7cf850a26f134b46ad62580..ac93b9770c1eb9ff2e5829f5cb234654e742cf27 100644 (file)
--- a/sci-chemistry/gromacs/gromacs-5.0.4.ebuild
+++ b/sci-chemistry/gromacs/gromacs-5.0.4.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2015 Gentoo Foundation
+# Copyright 1999-2017 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
 
 EAPI=5
@@ -10,7 +10,7 @@ inherit bash-completion-r1 cmake-utils cuda eutils multilib readme.gentoo toolch
 if [[ $PV = *9999* ]]; then
        EGIT_REPO_URI="git://git.gromacs.org/gromacs.git
                https://gerrit.gromacs.org/gromacs.git
-               git://github.com/gromacs/gromacs.git
+               https://github.com/gromacs/gromacs.git
                http://repo.or.cz/r/gromacs.git"
        EGIT_BRANCH="release-5-0"
        inherit git-r3
@@ -272,7 +272,7 @@ pkg_postinst() {
        einfo
        einfo  "Please read and cite:"
        einfo  "Gromacs 4, J. Chem. Theory Comput. 4, 435 (2008). "
-       einfo  "http://dx.doi.org/10.1021/ct700301q"
+       einfo  "https://dx.doi.org/10.1021/ct700301q"
        einfo
        readme.gentoo_print_elog
 }

diff --git a/sci-chemistry/gromacs/gromacs-5.0.9999.ebuild b/sci-chemistry/gromacs/gromacs-5.0.9999.ebuild
index fcd705fd6079ac9f5c3e01a2057614c1a7676168..d417af1167a27de0881e3c8f05dfad1dafa1c14f 100644 (file)
--- a/sci-chemistry/gromacs/gromacs-5.0.9999.ebuild
+++ b/sci-chemistry/gromacs/gromacs-5.0.9999.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2016 Gentoo Foundation
+# Copyright 1999-2017 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
 
 EAPI=6
@@ -10,7 +10,7 @@ inherit bash-completion-r1 cmake-utils cuda eutils multilib readme.gentoo-r1 too
 if [[ $PV = *9999* ]]; then
        EGIT_REPO_URI="git://git.gromacs.org/gromacs.git
                https://gerrit.gromacs.org/gromacs.git
-               git://github.com/gromacs/gromacs.git
+               https://github.com/gromacs/gromacs.git
                http://repo.or.cz/r/gromacs.git"
        EGIT_BRANCH="release-5-0"
        inherit git-r3
@@ -277,7 +277,7 @@ pkg_postinst() {
        einfo
        einfo  "Please read and cite:"
        einfo  "Gromacs 4, J. Chem. Theory Comput. 4, 435 (2008). "
-       einfo  "http://dx.doi.org/10.1021/ct700301q"
+       einfo  "https://dx.doi.org/10.1021/ct700301q"
        einfo
        readme.gentoo_print_elog
 }

diff --git a/sci-chemistry/gromacs/gromacs-5.1.3.ebuild b/sci-chemistry/gromacs/gromacs-5.1.3.ebuild
index 1a409ea98db9e90158761d1184ad112386a54f7b..b08ea7c3af7fdfb15a139270898bb038c8956120 100644 (file)
--- a/sci-chemistry/gromacs/gromacs-5.1.3.ebuild
+++ b/sci-chemistry/gromacs/gromacs-5.1.3.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2016 Gentoo Foundation
+# Copyright 1999-2017 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
 
 EAPI=6
@@ -10,7 +10,7 @@ inherit bash-completion-r1 cmake-utils cuda eutils multilib readme.gentoo-r1 too
 if [[ $PV = *9999* ]]; then
        EGIT_REPO_URI="git://git.gromacs.org/gromacs.git
                https://gerrit.gromacs.org/gromacs.git
-               git://github.com/gromacs/gromacs.git
+               https://github.com/gromacs/gromacs.git
                http://repo.or.cz/r/gromacs.git"
        [[ $PV = 9999 ]] && EGIT_BRANCH="master" || EGIT_BRANCH="release-${PV:0:1}-${PV:2:1}"
        inherit git-r3
@@ -262,7 +262,7 @@ pkg_postinst() {
        einfo
        einfo  "Please read and cite:"
        einfo  "Gromacs 4, J. Chem. Theory Comput. 4, 435 (2008). "
-       einfo  "http://dx.doi.org/10.1021/ct700301q"
+       einfo  "https://dx.doi.org/10.1021/ct700301q"
        einfo
        readme.gentoo_print_elog
 }

diff --git a/sci-chemistry/gromacs/gromacs-5.1.9999.ebuild b/sci-chemistry/gromacs/gromacs-5.1.9999.ebuild
index 1a409ea98db9e90158761d1184ad112386a54f7b..b08ea7c3af7fdfb15a139270898bb038c8956120 100644 (file)
--- a/sci-chemistry/gromacs/gromacs-5.1.9999.ebuild
+++ b/sci-chemistry/gromacs/gromacs-5.1.9999.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2016 Gentoo Foundation
+# Copyright 1999-2017 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
 
 EAPI=6
@@ -10,7 +10,7 @@ inherit bash-completion-r1 cmake-utils cuda eutils multilib readme.gentoo-r1 too
 if [[ $PV = *9999* ]]; then
        EGIT_REPO_URI="git://git.gromacs.org/gromacs.git
                https://gerrit.gromacs.org/gromacs.git
-               git://github.com/gromacs/gromacs.git
+               https://github.com/gromacs/gromacs.git
                http://repo.or.cz/r/gromacs.git"
        [[ $PV = 9999 ]] && EGIT_BRANCH="master" || EGIT_BRANCH="release-${PV:0:1}-${PV:2:1}"
        inherit git-r3
@@ -262,7 +262,7 @@ pkg_postinst() {
        einfo
        einfo  "Please read and cite:"
        einfo  "Gromacs 4, J. Chem. Theory Comput. 4, 435 (2008). "
-       einfo  "http://dx.doi.org/10.1021/ct700301q"
+       einfo  "https://dx.doi.org/10.1021/ct700301q"
        einfo
        readme.gentoo_print_elog
 }

diff --git a/sci-chemistry/gromacs/gromacs-9999.ebuild b/sci-chemistry/gromacs/gromacs-9999.ebuild
index cb06e143506645fc0522d67ee9918fc984db74e6..b38e62cc3e58263429d089972cd0aa4cfd8938d0 100644 (file)
--- a/sci-chemistry/gromacs/gromacs-9999.ebuild
+++ b/sci-chemistry/gromacs/gromacs-9999.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2016 Gentoo Foundation
+# Copyright 1999-2017 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
 
 EAPI=6
@@ -10,7 +10,7 @@ inherit bash-completion-r1 cmake-utils cuda eutils multilib readme.gentoo-r1 too
 if [[ $PV = *9999* ]]; then
        EGIT_REPO_URI="git://git.gromacs.org/gromacs.git
                https://gerrit.gromacs.org/gromacs.git
-               git://github.com/gromacs/gromacs.git
+               https://github.com/gromacs/gromacs.git
                http://repo.or.cz/r/gromacs.git"
        [[ $PV = 9999 ]] && EGIT_BRANCH="master" || EGIT_BRANCH="release-${PV:0:4}"
        inherit git-r3
@@ -261,7 +261,7 @@ pkg_postinst() {
        einfo
        einfo  "Please read and cite:"
        einfo  "Gromacs 4, J. Chem. Theory Comput. 4, 435 (2008). "
-       einfo  "http://dx.doi.org/10.1021/ct700301q"
+       einfo  "https://dx.doi.org/10.1021/ct700301q"
        einfo
        readme.gentoo_print_elog
 }