+++ /dev/null
-# Copyright 1999-2019 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=5
-
-PYTHON_COMPAT=( python2_7 )
-
-inherit autotools elisp-common eutils flag-o-matic multilib python-single-r1 toolchain-funcs
-
-# To stop the download madness we now roll our own tarball (Feb 2016)
-DESCRIPTION="Research tool for commutative algebra and algebraic geometry"
-HOMEPAGE="http://www.math.uiuc.edu/Macaulay2/"
-BASE_URI="http://www.math.uiuc.edu/Macaulay2/Downloads/OtherSourceCode/"
-BASE_URI2="https://dev.gentoo.org/~tomka/files/"
-SRC_URI="
- ${BASE_URI2}/${P}-fat.tar.bz2
-"
-
-SLOT="0"
-LICENSE="GPL-2"
-KEYWORDS="~amd64 ~arm ~x86"
-IUSE="debug emacs +optimization"
-
-REQUIRED_USE="${PYTHON_REQUIRED_USE}"
-
-DEPEND="${PYTHON_DEPS}
- sys-process/time
- virtual/pkgconfig"
-
-RDEPEND="${PYTHON_DEPS}
- sys-libs/gdbm
- sci-mathematics/pari[gmp]
- >=sys-libs/readline-6.1
- dev-libs/libxml2:2
- sci-mathematics/flint[gc]
- sci-mathematics/frobby
- sci-mathematics/4ti2
- sci-mathematics/nauty
- >=sci-mathematics/normaliz-2.8
- sci-mathematics/gfan
- sci-libs/cdd+
- sci-libs/cddlib
- sci-libs/lrslib[gmp]
- virtual/blas
- virtual/lapack
- dev-util/ctags
- sys-libs/ncurses
- >=dev-libs/boehm-gc-7.4[threads]
- dev-libs/libatomic_ops
- emacs? ( >=app-editors/emacs-23.1:* )"
-
-SITEFILE=70Macaulay2-gentoo.el
-
-S="${WORKDIR}/M2/M2"
-
-pkg_setup () {
- tc-export CC CPP CXX PKG_CONFIG
- append-cppflags "-I/usr/include/frobby"
- # gtest needs python:2
- python-single-r1_pkg_setup
-}
-
-src_prepare() {
- # Patching .m2 files to look for external programs in
- # /usr/bin
- epatch "${FILESDIR}"/1.6-paths-of-external-programs.patch
-
- # Shortcircuit lapack tests
- epatch "${FILESDIR}/${P}"-lapack.patch
-
- eautoreconf
-}
-
-src_configure (){
- # Recommended in bug #268064 Possibly unecessary
- # but should not hurt anybody.
- if ! use emacs; then
- tags="ctags"
- fi
-
- # configure instead of econf to enable install with --prefix
- ./configure LIBS="$($(tc-getPKG_CONFIG) --libs lapack)" \
- --prefix="${D}usr/" \
- --libdir='${exec_prefix}'/$(get_libdir)/ \
- --disable-encap \
- --disable-strip \
- --with-issue=Gentoo \
- $(use_enable optimization optimize) \
- $(use_enable debug) \
- --enable-build-libraries="factory" \
- --with-unbuilt-programs="4ti2 gfan normaliz nauty cddplus lrslib" \
- || die "failed to configure Macaulay"
-}
-
-src_compile() {
- # Parallel build not supported yet
- emake IgnoreExampleErrors=true -j1
-
- if use emacs; then
- cd "${S}/Macaulay2/emacs" || die
- elisp-compile *.el
- fi
-}
-
-src_test() {
- # No parallel tests yet & Need to increase the time
- # limit for long running tests in Schubert2 to pass
- emake TLIMIT=750 -j1 check
-}
-
-src_install () {
- # Parallel install not supported yet
- emake IgnoreExampleErrors=true -j1 install
-
- # Remove emacs files and install them in the
- # correct place if use emacs
- rm -rf "${ED}"/usr/share/emacs/site-lisp || die
- if use emacs; then
- cd "${S}/Macaulay2/emacs" || die
- elisp-install ${PN} *.elc *.el
- elisp-site-file-install "${FILESDIR}/${SITEFILE}"
- fi
-}
-
-pkg_postinst() {
- if use emacs; then
- elisp-site-regen
- elog "If you want to set a hot key for Macaulay2 in Emacs add a line similar to"
- elog "(global-set-key [ f12 ] 'M2)"
- elog "in order to set it to F12 (or choose a different one)."
- fi
-}
-
-pkg_postrm() {
- use emacs && elisp-site-regen
-}
+++ /dev/null
-DIST Macaulay2-1.8.2.1-fat.tar.bz2 26102483 BLAKE2B 3841505051b544cc2bc2c302032120b0019e8cd7bf5573c958e0309bf40fbb89f5a57da81759f5880d2fb2c1bc586c3af4b5488500cad43699e7562da0f4f821 SHA512 64f7ea9b01cdb308023a55d8ab8bd6733540f25161dacf27052c071e143418c68c639d5115cf32540c11594b70eae14473f4ef6ce5bd12b6df0722da7c13dd2c
+++ /dev/null
-diff -U 3 -dHrN M2source/Macaulay2/packages/FourTiTwo.m2 M2source.patch/Macaulay2/packages/FourTiTwo.m2
---- M2source/Macaulay2/packages/FourTiTwo.m2 2011-09-22 14:36:51.000000000 +0100
-+++ M2source.patch/Macaulay2/packages/FourTiTwo.m2 2011-09-24 21:24:12.000000000 +0100
-@@ -47,7 +47,7 @@
-
- path'4ti2 = (options FourTiTwo).Configuration#"path"
- -- NOTE: the absolute path should be put into the .init file for 4ti2 inside the .Macaulay2 directory.
--if path'4ti2 == "" then path'4ti2 = prefixDirectory | currentLayout#"programs"
-+if path'4ti2 == "" then path'4ti2 = "/usr/bin/"
-
- getFilename = () -> (
- filename := temporaryFileName();
-diff -U 3 -dHrN M2source/Macaulay2/packages/gfanInterface.m2 M2source.patch/Macaulay2/packages/gfanInterface.m2
---- M2source/Macaulay2/packages/gfanInterface.m2 2011-05-14 12:00:59.000000000 +0100
-+++ M2source.patch/Macaulay2/packages/gfanInterface.m2 2011-09-24 21:24:12.000000000 +0100
-@@ -25,7 +25,7 @@
- }
-
- gfan'path = gfanInterface#Options#Configuration#"path"
--if gfan'path == "" then gfan'path = prefixDirectory | currentLayout#"programs"
-+if gfan'path == "" then gfan'path = "/usr/bin/"
- if instance(gfan'path, String) then gfan'path = {gfan'path}
- if not instance(gfan'path,List) then error "expected configuration option gfan'path to be a list of strings or a string"
- gfan'path = join(
-diff -U 3 -dHrN M2source/Macaulay2/packages/NautyGraphs.m2 M2source.patch/Macaulay2/packages/NautyGraphs.m2
---- M2source/Macaulay2/packages/NautyGraphs.m2 2011-08-26 11:05:30.000000000 +0100
-+++ M2source.patch/Macaulay2/packages/NautyGraphs.m2 2011-09-24 21:25:53.000000000 +0100
-@@ -32,7 +32,7 @@
- -- Check the ~/.Macaulay2/init-NautyGraphs.m2 file for the absolute path.
- -- If it's not there, then use the M2-Programs directory.
- nauty'path = (options NautyGraphs).Configuration#"path";
--if nauty'path == "" then nauty'path = prefixDirectory | currentLayout#"programs";
-+if nauty'path == "" then nauty'path = "/usr/bin/";
-
- -------------------
- -- Exports
-diff -U 3 -dHrN M2source/Macaulay2/packages/Nauty.m2 M2source.patch/Macaulay2/packages/Nauty.m2
---- M2source/Macaulay2/packages/Nauty.m2 2011-08-26 11:05:30.000000000 +0100
-+++ M2source.patch/Macaulay2/packages/Nauty.m2 2011-09-24 21:24:12.000000000 +0100
-@@ -48,7 +48,8 @@
- -- Check the ~/.Macaulay2/init-Nauty.m2 file for the absolute path.
- -- If it's not there, then use the M2-Programs directory.
- nauty'path = (options Nauty).Configuration#"path";
--if nauty'path == "" then nauty'path = prefixDirectory | currentLayout#"programs";
-+if nauty'path == "" then nauty'path = "/usr/bin/";
-+
-
- -------------------
- -- Exports
-diff -U 3 -dHrN M2source/Macaulay2/packages/Normaliz.m2 M2source.patch/Macaulay2/packages/Normaliz.m2
---- M2source/Macaulay2/packages/Normaliz.m2 2011-05-25 16:47:50.000000000 +0100
-+++ M2source.patch/Macaulay2/packages/Normaliz.m2 2011-09-24 21:24:12.000000000 +0100
-@@ -166,7 +166,7 @@
- nmzExec="normaliz";
- );
- -- return nmzExec;
-- return prefixDirectory | currentLayout#"programs" | nmzExec;
-+ return "/usr/bin/" | nmzExec;
- );
-
-
-diff -U 3 -dHrN M2source/Macaulay2/packages/StatePolytope.m2 M2source.patch/Macaulay2/packages/StatePolytope.m2
---- M2source/Macaulay2/packages/StatePolytope.m2 2010-09-10 16:47:20.000000000 +0100
-+++ M2source.patch/Macaulay2/packages/StatePolytope.m2 2011-09-24 21:24:12.000000000 +0100
-@@ -31,7 +31,7 @@
-
-
- gfanCommand = (options StatePolytope)#Configuration#"gfan command"
--if gfanCommand === "gfan" then gfanCommand = prefixDirectory | currentLayout#"programs" | gfanCommand
-+if gfanCommand === "gfan" then gfanCommand = "/usr/bin/" | gfanCommand
- gfanCommand = "!" | gfanCommand
-
- --The next two functions print out the ring and the ideal in the format required by gfan
+++ /dev/null
-;; sci-mathematics/Macaulay2 init file
-
-(add-to-list 'load-path "/usr/share/emacs/site-lisp/Macaulay2")
-
-(defvar M2-exe "/usr/bin/M2" "*The default Macaulay2 executable name.")
-(autoload 'M2 "M2.el" "Run Macaulay 2 in a buffer." t)
-(autoload 'Macaulay2 "M2" "Run Macaulay 2 in a buffer, non-interactive." t)
-(autoload 'M2-mode "M2" "Macaulay 2 editing mode" t)
-(autoload 'm2-mode "M2" "Macaulay 2 editing mode, name in lower case" t)
-(autoload 'm2-comint-mode "M2" "Macaulay 2 command interpreter mode, name in lower case" t)
-(setq auto-mode-alist (append auto-mode-alist '(("\\.m2$" . M2-mode))))
\ No newline at end of file
+++ /dev/null
---- configure.ac 2015-09-03 14:49:42.000000000 +0200
-+++ configure.ac.new 2016-01-27 12:50:07.812215547 +0100
-@@ -1301,46 +1301,7 @@
- BUILTLIBS="$SINGULARLIBS $BUILTLIBS"
- fi
-
--# we need to do the fortran library testing last, in case AC_SEARCH_LIBS adds
--# one of them to $LIBS, making it impossible to check for the presence of C or
--# C++ libraries. (I'm not sure why putting -llapack on the gcc command line
--# needlessly causes the library to be linked against.)
--FORTRANUSED=no
--if test "$LAPACK" = yes
--then AC_MSG_CHECKING([whether the Accelerate framework is available])
-- SAVELIBS=$LIBS LIBS="-framework Accelerate $LIBS"
-- AC_LANG(C)
-- AC_LINK_IFELSE(
-- [AC_LANG_PROGRAM(,[sgemv_();dgetrf_();])],
-- [
-- AC_MSG_RESULT(yes)
-- ],
-- [
-- AC_MSG_RESULT(no)
-- LIBS=$SAVELIBS
-- FORTRANUSED=yes
-- if test $BUILD_lapack = no
-- then AC_LANG(Fortran)
-- if test "$FC" = ""
-- then AC_MSG_ERROR(no fortran compiler found)
-- else AC_MSG_NOTICE(using fortran compiler $FC)
-- fi
-- AC_SEARCH_LIBS(sgemv,blas f77blas,,BUILD_lapack=yes)
-- AC_SEARCH_LIBS(dgetrf,lapack,,BUILD_lapack=yes)
-- fi
-- ])
--fi
--test $BUILD_lapack = yes && BUILTLIBS="-llapack -lrefblas $BUILTLIBS"
--
--if test $BUILD_lapack = yes
--then # test whether the fortran compiler can handle lapack, which, starting with
-- # version 3.2, requires fortran 90, not fortran 77
-- AC_LANG(Fortran)
-- AC_MSG_CHECKING([whether the fortran compiler is modern enough for lapack])
-- AC_COMPILE_IFELSE([instrinsic maxloc],
-- AC_MSG_ERROR(the fortran compiler ($FC) does not support the Fortran 90 language required for compiling lapack),
-- AC_MSG_RESULT(yes))
--fi
-+BUILTLIBS="$(${PKG_CONFIG} --libs lapack) $BUILTLIBS"
-
- test "$USE_FCLIBS" = no && FCLIBS=
- test "$FORTRANUSED" = no && FCLIBS=
+++ /dev/null
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
- <maintainer type="project">
- <email>sci-mathematics@gentoo.org</email>
- <name>Gentoo Mathematics Project</name>
- </maintainer>
- <use>
- <flag name="optimization">Accept upstream's choices for -O option, i.e. -O3 almost everywhere.</flag>
- </use>
- <longdescription lang="en">
- Macaulay2 is a research tool for algraic geometry and commutative
- algebra.
-</longdescription>
-</pkgmetadata>
projects / gentoo.git / commitdiff