sci-biology/lagan: Remove old ebuilds

Package-Manager: portage-2.3.0

diff --git a/sci-biology/lagan/lagan-2.0-r1.ebuild b/sci-biology/lagan/lagan-2.0-r1.ebuild
deleted file mode 100644 (file)
index 63b966e..0000000
--- a/sci-biology/lagan/lagan-2.0-r1.ebuild
+++ /dev/null
@@ -1,50 +0,0 @@
-# Copyright 1999-2009 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Id$
-
-EAPI="2"
-
-inherit eutils
-
-MY_P="lagan20"
-
-DESCRIPTION="LAGAN, Multi-LAGAN, Shuffle-LAGAN, Supermap: Whole-genome multiple alignment of genomic DNA"
-HOMEPAGE="http://lagan.stanford.edu/lagan_web/index.shtml"
-SRC_URI="http://lagan.stanford.edu/lagan_web/${MY_P}.tar.gz"
-
-LICENSE="GPL-2"
-SLOT="0"
-IUSE=""
-KEYWORDS="~amd64 ~x86"
-
-DEPEND=""
-RDEPEND=""
-
-S="${WORKDIR}/${MY_P}"
-
-src_prepare() {
-       sed -i "/use Getopt::Long;/ i use lib \"/usr/share/${PN}/lib\";" "${S}/supermap.pl" || die
-       # NB: Testing with glibc-2.10 has uncovered a bug in src/utils/Sequence.h where libc getline is erroneously used instead of own getline
-       sed -i 's/getline/my_getline/' "${S}"/src/{anchors.c,glocal/io.cpp} || die
-       epatch "${FILESDIR}"/${P}-*.patch
-}
-
-src_install() {
-       dobin lagan.pl slagan.pl mlagan
-       rm lagan.pl slagan.pl utils/Utils.pm
-       dodir /usr/share/${PN}/lib
-       insinto /usr/share/${PN}/lib
-       doins Utils.pm
-       exeinto /usr/share/${PN}/utils
-       doexe utils/*
-       exeinto /usr/share/${PN}
-       doexe *.pl anchors chaos glocal order prolagan
-       insinto /usr/share/${PN}
-       doins *.txt
-       dosym /usr/share/${PN}/supermap.pl /usr/bin/supermap
-       dosym /usr/bin/lagan.pl /usr/bin/lagan
-       dosym /usr/bin/slagan.pl /usr/bin/slagan
-       echo "LAGAN_DIR=\"/usr/share/${PN}\"" > ${S}/99${PN}
-       doenvd "${S}/99${PN}"
-       dodoc Readmes/README.*
-}

diff --git a/sci-biology/lagan/lagan-2.0-r2.ebuild b/sci-biology/lagan/lagan-2.0-r2.ebuild
deleted file mode 100644 (file)
index a37a373..0000000
--- a/sci-biology/lagan/lagan-2.0-r2.ebuild
+++ /dev/null
@@ -1,55 +0,0 @@
-# Copyright 1999-2010 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Id$
-
-EAPI="2"
-
-inherit eutils multilib toolchain-funcs
-
-MY_P="lagan20"
-
-DESCRIPTION="LAGAN, Multi-LAGAN, Shuffle-LAGAN, Supermap: Whole-genome multiple alignment of genomic DNA"
-HOMEPAGE="http://lagan.stanford.edu/lagan_web/index.shtml"
-SRC_URI="http://lagan.stanford.edu/lagan_web/${MY_P}.tar.gz"
-
-LICENSE="GPL-2"
-SLOT="0"
-IUSE=""
-KEYWORDS="~amd64 ~x86"
-
-S="${WORKDIR}/${MY_P}"
-
-src_prepare() {
-       sed -i "/use Getopt::Long;/ i use lib \"/usr/$(get_libdir)/${PN}/lib\";" "${S}/supermap.pl" || die
-       # NB: Testing with glibc-2.10 has uncovered a bug in src/utils/Sequence.h where libc getline is erroneously used instead of own getline
-       sed -i 's/getline/my_getline/' "${S}"/src/{anchors.c,glocal/io.cpp} || die
-       epatch "${FILESDIR}"/${P}-*.patch
-}
-
-src_compile() {
-       emake \
-               CC=$(tc-getCC) \
-               CXX=$(tc-getCXX) \
-               CXXFLAGS="${CXXFLAGS}" \
-               CFLAGS="${CFLAGS}"
-}
-
-src_install() {
-       newbin lagan.pl lagan || die
-       newbin slagan.pl slagan || die
-       dobin mlagan || die
-       rm lagan.pl slagan.pl utils/Utils.pm
-
-       insinto /usr/$(get_libdir)/${PN}/lib
-       doins Utils.pm || die
-       exeinto /usr/$(get_libdir)/${PN}/utils
-       doexe utils/* || die
-       exeinto /usr/$(get_libdir)/${PN}
-       doexe *.pl anchors chaos glocal order prolagan || die
-       insinto /usr/$(get_libdir)/${PN}
-       doins *.txt || die
-       dosym /usr/$(get_libdir)/${PN}/supermap.pl /usr/bin/supermap
-       echo "LAGAN_DIR=\"/usr/$(get_libdir)/${PN}\"" > ${S}/99${PN}
-       doenvd "${S}/99${PN}" || die
-       dodoc Readmes/README.* || die
-}