+++ /dev/null
-# Copyright 1999-2015 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Id$
-
-EAPI=5
-
-AUTOTOOLS_AUTORECONF=yes
-
-inherit autotools-utils
-
-DESCRIPTION="A variant ascertainment algorithm that can be used to detect SNPs, indels, and other polymorphisms"
-HOMEPAGE="http://www.broadinstitute.org/science/programs/genome-biology/crd/"
-SRC_URI="
- ftp://ftp.broad.mit.edu/pub/crd/VAAL/latest_source_code/${P}.tar.gz
- ftp://ftp.broad.mit.edu/pub/crd/VAAL/VAAL_manual.doc"
-
-LICENSE="Whitehead-MIT"
-SLOT="0"
-KEYWORDS="amd64"
-IUSE="openmp"
-
-DEPEND=">=dev-libs/boost-1.41.0-r3"
-RDEPEND="${DEPEND}"
-
-DOCS=( "${DISTDIR}/VAAL_manual.doc" )
-
-src_prepare() {
- sed \
- -e '/COPYING/d' \
- -i src/Makefile.am || die
-
- sed \
- -e 's:-ggdb::g' \
- -e '/AC_OPENMP_CEHCK/d' \
- -i configure.ac || die
- autotools-utils_src_prepare
-}
-
-src_configure(){
- local myeconfargs=( $(use_enable openmp) )
- autotools-utils_src_configure
-}