Version bump

Package-Manager: portage-2.2.0_alpha45/cvs/Linux x86_64

diff --git a/sci-biology/amos/ChangeLog b/sci-biology/amos/ChangeLog
index af74e34b8945e36c0ae4e5b5f9dd127d2612c725..b91321d046aa9253312a452665f16837bf327931 100644 (file)
--- a/sci-biology/amos/ChangeLog
+++ b/sci-biology/amos/ChangeLog
@@ -1,6 +1,13 @@
 # ChangeLog for sci-biology/amos
 # Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/amos/ChangeLog,v 1.10 2011/05/28 19:26:40 phajdan.jr Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/amos/ChangeLog,v 1.11 2011/08/12 15:48:20 weaver Exp $
+
+*amos-3.1.0 (12 Aug 2011)
+*amos-3.0.1 (12 Aug 2011)
+
+  12 Aug 2011; Andrey Kislyuk <weaver@gentoo.org> +amos-3.0.1.ebuild,
+  +amos-3.1.0.ebuild:
+  Version bump
 
   28 May 2011; Pawel Hajdan jr <phajdan.jr@gentoo.org> amos-3.0.0.ebuild:
   x86 stable wrt bug #368287

diff --git a/sci-biology/amos/Manifest b/sci-biology/amos/Manifest
index 87c990bac737a48cf416a75a4110f74637499d1d..5145685ecc1371823f29028bb5403d52691454a9 100644 (file)
--- a/sci-biology/amos/Manifest
+++ b/sci-biology/amos/Manifest
@@ -4,14 +4,18 @@ Hash: SHA1
 AUX amos-2.0.8-gcc44.patch 3555 RMD160 8bf9d9f6290b573b373542d180f8f788d8042334 SHA1 0d5b92c9203ce4a0ba4681b301ee419984d9b3ba SHA256 e07bd2b40ee21db39d096db5367ef7c12baa78ba776101919945f60b8507d5b1
 DIST amos-2.0.8.tar.gz 1757124 RMD160 98cfa30081e849a36285e159010ab85b3a116eeb SHA1 3b59c07325b108df9683a57dc168cdf60714cedc SHA256 5c8adf33816278411ead7ad2f6509ebfee2388f9cb89d2196d8e5ad9b0c8ffd1
 DIST amos-3.0.0.tar.gz 1940705 RMD160 3c2f2819696b01a5e7fc293e0f76f5ee591c7b57 SHA1 7ffc685ae9bb354b163916609189d3cb3c6775b5 SHA256 6426ca20dd98b7f9329c016a8b61b98f7d71bf1527e32441efca8beaf55792af
+DIST amos-3.0.1.tar.gz 1876671 RMD160 857c9703ba11391a1fbe1bea1b950c8bf81dc21e SHA1 977b66f24565d29e01b6c30c1b44636f4d6527f8 SHA256 3c6638c8c012b2a8457d1d1f15ac207e42db662a68da9d90f6d08a81462a6b63
+DIST amos-3.1.0.tar.gz 2094268 RMD160 2ee8cb46c18d2807878feed5a9df94230db180e2 SHA1 28e799e37713594ba7147d300ecae6574beb14a4 SHA256 2d9f50e39186ad3dde3d3b28cc265e8d632430657f40fc3978ce34ab1b3db43b
 EBUILD amos-2.0.8-r1.ebuild 843 RMD160 56cb133c15ee3edb74eab731990465e9a5d38ad4 SHA1 b7880ccf266a5779a22acd80c436c8953d01540a SHA256 f40d1a766830bddc1dca3ab715e7a85270acd5871343815b304ab4f55a053475
 EBUILD amos-3.0.0.ebuild 680 RMD160 6edbbf991063fc2230718a01110d1bfe37399cbf SHA1 f9b95020529356574772849409ed9f3740889723 SHA256 d6da11cfbf41cedc32ace765ab4cfacd0b7c246c94452412e273d4fed21452a9
-MISC ChangeLog 1436 RMD160 cdf28bd01ce015200d73b4e59711da8cadfa489f SHA1 9dcee061f6bffd6a116fe5f283c07bc475ddc637 SHA256 8916fe13a4a7f935802301147d339d23d19d9b46a78d84d1ad6c02ab4c6c9720
-MISC metadata.xml 259 RMD160 d9d81b67d635fabd81aef8ae0edf971211ae9072 SHA1 8e32f751c67ff891fa35405a2cf6fb33752d6eb1 SHA256 541c3fbcf299d9a8ccf4132ee61f9e53a5d737cefdaa6fdc77764d8d4c7f3110
+EBUILD amos-3.0.1.ebuild 678 RMD160 634708e69761a33376cd058b77b79885eeb50105 SHA1 0c2b430fb94351b46d6f58a435bc5b5563a06abf SHA256 b0b9319e52b6cdac7fbeacf6170242941686d928892afd0347432621d99f1594
+EBUILD amos-3.1.0.ebuild 707 RMD160 6f82db38eeb800a1832064111aadde59a7efdd70 SHA1 17234a61c145990259ec1f6d30aa60b2b7c404c7 SHA256 7e19c1af679fce960889468f955045fe61ecd9f766010eac9e7214163d025ed5
+MISC ChangeLog 1593 RMD160 8312613dd7dd640a34817ba668ea0f5c5c1a85f6 SHA1 b025e3608975cb2bbfdbccab8e1b1bef0872a25f SHA256 4eaf5c42527a5eff2fdfc76666f1b95a4af923d5b47474a7170cba5ce9ad2a74
+MISC metadata.xml 335 RMD160 39a05672490ffcb50781544bfb0e35d962e39cd2 SHA1 956b476760d63aba00a5a39715a5af9bc8af5418 SHA256 e45d9aed28673c90154e31ef8f1d043dfe302b65a2545160e716e0b227c035b0
 -----BEGIN PGP SIGNATURE-----
-Version: GnuPG v2.0.17 (GNU/Linux)
+Version: GnuPG v1.4.11 (GNU/Linux)
 
-iEYEARECAAYFAk3hTHMACgkQuUQtlDBCeQInxwCeNPZbtJqKRlj1yCiXsaw7FsUD
-lTQAn0yuR1Bdt6tmnmDNEYjfz8XrHbnA
-=nSbk
+iEYEARECAAYFAk5FS0oACgkQ8xSwyhbn2ObhqQCaA3AkaPlmRJHtTJ2bdYT3LY+g
+m6QAnRaKV1VLmIHaIKvnRgSX2XzkHs62
+=PJOe
 -----END PGP SIGNATURE-----

diff --git a/sci-biology/amos/amos-3.0.1.ebuild b/sci-biology/amos/amos-3.0.1.ebuild
new file mode 100644 (file)
index 0000000..fe8bd7b
--- /dev/null
+++ b/sci-biology/amos/amos-3.0.1.ebuild
@@ -0,0 +1,30 @@
+# Copyright 1999-2011 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/amos/amos-3.0.1.ebuild,v 1.1 2011/08/12 15:48:21 weaver Exp $
+
+EAPI="3"
+
+inherit eutils
+
+DESCRIPTION="A Modular, Open-Source whole genome assembler"
+HOMEPAGE="http://amos.sourceforge.net/"
+SRC_URI="mirror://sourceforge/${PN}/${P}.tar.gz"
+
+LICENSE="Artistic"
+SLOT="0"
+IUSE=""
+KEYWORDS="~amd64 ~x86"
+
+#DEPEND=">=x11-libs/qt-3.3:3"
+DEPEND=""
+RDEPEND="${DEPEND}
+       dev-perl/DBI
+       sci-biology/mummer"
+
+src_compile() {
+       emake -j1 || die "emake failed"
+}
+
+src_install() {
+       emake DESTDIR="${D}" install || die "emake install failed"
+}

diff --git a/sci-biology/amos/amos-3.1.0.ebuild b/sci-biology/amos/amos-3.1.0.ebuild
new file mode 100644 (file)
index 0000000..d169bb5
--- /dev/null
+++ b/sci-biology/amos/amos-3.1.0.ebuild
@@ -0,0 +1,30 @@
+# Copyright 1999-2011 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/amos/amos-3.1.0.ebuild,v 1.1 2011/08/12 15:48:21 weaver Exp $
+
+EAPI=4
+
+inherit eutils
+
+DESCRIPTION="A Modular, Open-Source whole genome assembler"
+HOMEPAGE="http://amos.sourceforge.net/"
+SRC_URI="mirror://sourceforge/${PN}/${P}.tar.gz"
+
+LICENSE="Artistic"
+SLOT="0"
+IUSE="qt"
+KEYWORDS="~amd64 ~x86"
+
+DEPEND="qt? ( x11-libs/qt-core:4 )"
+RDEPEND="${DEPEND}
+       dev-perl/DBI
+       dev-perl/Statistics-Descriptive
+       sci-biology/mummer"
+
+src_compile() {
+       emake -j1 || die "emake failed"
+}
+
+src_install() {
+       emake DESTDIR="${D}" install || die "emake install failed"
+}

diff --git a/sci-biology/amos/metadata.xml b/sci-biology/amos/metadata.xml
index 3302123e5718863b3d43510ff6025ae25c0f3ae1..f9defa6e6fcdaedf2c7846734f28df2ce7acc640 100644 (file)
--- a/sci-biology/amos/metadata.xml
+++ b/sci-biology/amos/metadata.xml
@@ -6,4 +6,7 @@
                <name>Andrey Kislyuk</name>
        </maintainer>
        <herd>sci-biology</herd>
+       <use>
+               <flag name='qt'>Compile the hawkeye assembly viewer</flag>
+       </use>
 </pkgmetadata>