Drop old

Package-Manager: portage-2.2.18/cvs/Linux x86_64
Manifest-Sign-Key: 0xB9D4F231BD1558AB!

diff --git a/sci-biology/vaal/ChangeLog b/sci-biology/vaal/ChangeLog
index ebcb0591d01335e73a6b23beaa184b2f90f214bf..17ab58d7ca1fbdee45c15999662ce55f2b2407dd 100644 (file)
--- a/sci-biology/vaal/ChangeLog
+++ b/sci-biology/vaal/ChangeLog
@@ -1,6 +1,9 @@
 # ChangeLog for sci-biology/vaal
 # Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/vaal/ChangeLog,v 1.16 2015/03/24 17:23:36 ago Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/vaal/ChangeLog,v 1.17 2015/03/24 20:21:45 jlec Exp $
+
+  24 Mar 2015; Justin Lecher <jlec@gentoo.org> -vaal-1.6.ebuild:
+  Drop old
 
   24 Mar 2015; Agostino Sarubbo <ago@gentoo.org> vaal-46233.ebuild:
   Stable for amd64, wrt bug #543404

diff --git a/sci-biology/vaal/Manifest b/sci-biology/vaal/Manifest
index 2a33bb5bb615c1d0832aa0f5685710cbe1902d0f..bb3015913d582b6dafde9cba774776860053ae6d 100644 (file)
--- a/sci-biology/vaal/Manifest
+++ b/sci-biology/vaal/Manifest
@@ -1,32 +1,32 @@
 -----BEGIN PGP SIGNED MESSAGE-----
-Hash: SHA256
+Hash: SHA512
 
 AUX vaal-1.2-as-needed.patch 905 SHA256 6d097b3b72d394753e194974acf98a347e7e7046aaf865949aa551f0ee08a1f2 SHA512 efbe4aade5e415b689aa6cdddcf2ec23a64c46be6c4876c5ebacd3a820c95f46f12a2d4f5d3a210c55cefc0521f7070c0a37d975be882e022d06fe2276d93003 WHIRLPOOL 9ab2cced694387b835889c16a02eecfb3a3def995aa86f3d5c699299399c0a64ea9256bc1042a85ab1c5bcdc6df6e9701bee6ea69aadc316ba84299a6948c550
 AUX vaal-1.2-gcc-x86-no-autocast.patch 1877 SHA256 a365d038dffdf6ea1ece2a0e55426c436f457b3cb0e640345decb00f2849a285 SHA512 03ee1e8c4f891ef881d6d636383a62a95db22c8f3248b7dad152584332552a1f55a8754893060665c0710b687a1d07d9da6366a9350205fe2bbf8ba36fe9025e WHIRLPOOL 6a520a96877a919ea71b8c587b68c0290228a3ca80dd16fa1ed4cb7d105f979a2b02e8106fb66d7055e17b0f97b3795cab58c812e0241c9f6008b772061d804b
 AUX vaal-1.2-respect-flags.patch 1838 SHA256 42a1435657533c39ef9011be722ee217d0823c0f5802aaf2365136fddae49866 SHA512 d261b6e28b0fab6831bc3e24251f0672d9a8a7ccc1b5fafa83094c713965d0a4ea68a6854335f0d305b3eae91e0cdfef0cb8eff298ca72a2551180881307f1cd WHIRLPOOL 813dc25001bb82bd15b024e37c1e63be3a0baa7ad990918c41ef2a439e2393971f6ea98d682a9454fb9d1d80701a2ab38df931a6c80c7409bd7428e1bc741281
 AUX vaal-1.6-gcc47.patch 5516 SHA256 cbd9e5c1904a1392c1195258ebabb60a75ee6645bf3e25a45b4ebe2d4c42a6d9 SHA512 e05bd7906c197620ecf5300bcfc849b7bf9d25c8b3f4d0134f5a9e71f0f30f318a24769f81a835895752d1b0f2f98e96eef2cc4c6406a71720ac707748492c86 WHIRLPOOL 302fde231f5a38a94a543667cbd1abf8fb59f0624f2d5878a2aa2431a660cf9eb9de6b4e92751b545750f0c1fe52e614f06c7c6cfe0104ba6bca137ca73db6d0
 AUX vaal-1.6-respect-flags.patch 767 SHA256 f23b40e845727cdc5241cc909ebcd89c2b6d612cebe4f21ac7211c53246c6131 SHA512 f0638e8f8eac229c2ff9dbbbbf69dfa677841e306da978e2baca4bc3503f9b0e3e15e4b2187bc41c3be6b584fbd6ed4126786c2fb4f5924d849c3331196c909f WHIRLPOOL bd06f76c4a530aac4a1334572401d845be31ee3ba29dcfcd9b5521bd219d45234f380cc4f5e4df39a701fa5ae8c7e0d1fa133882a52abba9091632e1b1371090
-DIST VAAL.1.6.tgz 1096114 SHA256 4bfcd0825b14438ad72b9dbacc1e324d960bd25fc56b0d492bad59c9ff4205e6 SHA512 b6d4f446ef119906ecb5f947ba9a54b30cacef15cef9e5b795125fb37fd69494d901e5ce30ca0aadd7c15785013923733c9a7a9b4dd83850d9c3ae04d3c09df3 WHIRLPOOL 439f2cc001893bedd242fbcbc045f30c5db1b44bbcf4358895f4f25ddf109b8c66f3af7c42e6dc2fd6279b4955594aed6ea73d46c4d3f80a80a7a5c48e91f5f9
 DIST VAAL_manual.doc 48128 SHA256 08b662105e8db41b33ea5d6626b58d5a5d793b1dd40fdc663a7068d9abacdc83 SHA512 4da21b6559659764e108c118773bd8ed365b67e3a22de52c7c13429979bb765e7f5d05955ce746a7a55e8d3a6baa752ad575289e71dfd7fb5b8b7207f5cff171 WHIRLPOOL 3a7432974921946e28cd037e47b79fd31631f7a7915a96589a8485b84a3296e1e7d8768e84f4f9086b2648e270f9f84f1e73261bb0b492b3fa7a6cc6fe36f175
 DIST vaal-46233.tar.gz 1148052 SHA256 a1c27ae25583c1333c5169bb33a37cf461bc93b1c18c7e49f585c1cdc9e5a131 SHA512 7a6927d06e1788411063d38e446b7e3c93192e4322a33ea652855f72e550f35debcdb970b895f1fb8504411a54d9096f3dcf506faebd33d50eb033937e15a321 WHIRLPOOL e848bcd6b2dd0c0c52142a3d55acef6a98b816e37355d22386bf3a2fac21e1318a821a394ebd5851cd530aa9afb0d178debc3f74638ee0d0820209a0f432f59f
-EBUILD vaal-1.6.ebuild 1113 SHA256 92063d4645a5558f5733a74cfca0adb3464e2773f65a8de0da12530994d06e11 SHA512 cb1131f1f6c0ab0a9a1b9251022a12d06666213fed990447e741330c0a66667e4746ef88b1ef7506156f2f224676cdf0ffd38204e5830086bcd0668b5d9e1210 WHIRLPOOL b661d5211e2dae427847a2f37ef3435022b43775553a4b577eb789be6efa5a6b7fc550d3019cbc9b3ccefd8d5335eb34f743b9324bf7869d932b00168ae9c0ce
 EBUILD vaal-46233.ebuild 1038 SHA256 bd5e8a817b0d8ecbbaf4534826c940fb33f2d23cf9696cf0783ad925af5ff839 SHA512 0681b7aa10e6986226610993b99aaab0fcf6b0e5e2c0f955dfd7b6a6313f8d8149866419c4c0d16fae87a986896e60f438aee5ab35de81209e8b037fc0f8e03b WHIRLPOOL 85363e8dd7f2b8f233873b6917f3f719dd91989e2957a852fbf49946a8c5d0f1ad9e76b32ca939bb74890b039386be65769c4ab78f650d2cf19bee98983c81f8
-MISC ChangeLog 2603 SHA256 a21386bd411508f5baabb50824ec8fe1d2b3d117c26c44f7610465d3bf117eea SHA512 aeb3685309e93e7376a22f7a1cf74016c3447daf152a4f8843fca1ed7ab04ea7cef7fca44dd24e82a2b59b37c2d672465e0c75c90cad90d89a8bdfbedd44c032 WHIRLPOOL 50deb77790401927b7ce1d4518a87b87253c9b16ed15bd7b1bee055ed02790556d170a0b6c45da5b0c67a9cc81e2be55feffbbdb42515785953ece2dcb8db81b
+MISC ChangeLog 2681 SHA256 81c55ecaeb377f4fbdea4ec240493ff053b816f7494c5cec38796e35b491ed4b SHA512 6a74b5ccf8737743ea015583e343457025b6af240aec86279ac560faca236b78ec1da81cbdfdbdf752fc5aedc8eafa3727c4ea32144c364494f02b84fc32fc46 WHIRLPOOL a3ff51240d43bbcd781ddd66a98040fcf117e9ce4a359f1943da0cb667af87da1dfb825af8e36118a6771e0389ce683c4cffaac0d725ba8d3a93351f40ba139a
 MISC metadata.xml 166 SHA256 29b228f683c71345323d841414e410c929a320f34536eb30910498728260c8ac SHA512 51c5345bb1c4466b73e2feac8895c64fc119365e7f2c156702f4c93664d3aba028b3da9daaabf24f61a88220345fca7806771a252e8ae906cac5dec97862c7e0 WHIRLPOOL 211bf955d94fc1d93b12388a2c597a8d440fb5d78f84d59b2549569537098c3525b1fbab707441d62fabe20edcac2fd9ebe09c5d9870f1c9558d7ee90d5db5b3
 -----BEGIN PGP SIGNATURE-----
-Version: GnuPG v2
+Version: GnuPG v2.0
 
-iQIcBAEBCAAGBQJVEZ2ZAAoJELp701BxlEWfAMIP/joc6rNYN6zeRh+hRuVK0bbt
-nxLzNFsuecCyBDstr5esiNAW0Kef8nf68tJYRKbwHN2gUjDr8jCDRCJNbplGU4bG
-dBpT407B1VRT2OIQLFfW6HOLhrJbmnlHGzuTY0aERuHUa7yAoTG/oq20N7wd5XaO
-EFNgc0uQOR4QvUU5d4XmlGgRDqx+/I2FAsZXtgnvVh7MxoF4Wi+ow6muAtx8VUfu
-35dbcxM5mIB9Obr9ERslVjVratf6qwe0Pfw/8P4ngXgUJ4yefGzs851TWUYtsdz2
-Hng9d6L44puSG4+nEWBD1prtw58q5vZQfUzh5nIOFeAWO8YGSbiURknuvEI77li2
-/DzVyio2rRhHNEFeX7zP73pLpUF6Y6qNlKVr23eRiSwiXdeAHGgLuX5bUDqfLqxU
-2hSIE6IjZJ9/R5cNYddzr8S4B/QiRATczxPsanXBU+higiOdp4v1pH1VgsvlAzmL
-rR6Eu0Aa2SNsS9RhX+6LqE/i7bEsFF1WSi3Nk+VJXPVSwlJiCxk4f4P1rGx9fOZd
-0iFpOSGzxTj1ZdGt0FDrzAy/eeC0kEJUA6PHKrOQCNAw8EN9AD0pGFAu1+xXaItP
-Be9r5gZ9KO4J1rOP/5gpQ/Heu6b6MVqN8jNHfAV2W9CfLedcsA0bL5jA0TRt3qFN
-GnnomvUpZ5SkMCnx090k
-=APMe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+=qRjq
 -----END PGP SIGNATURE-----

diff --git a/sci-biology/vaal/vaal-1.6.ebuild b/sci-biology/vaal/vaal-1.6.ebuild
deleted file mode 100644 (file)
index 8620f63..0000000
--- a/sci-biology/vaal/vaal-1.6.ebuild
+++ /dev/null
@@ -1,48 +0,0 @@
-# Copyright 1999-2013 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/vaal/vaal-1.6.ebuild,v 1.6 2013/11/12 17:44:27 jlec Exp $
-
-EAPI=4
-
-AUTOTOOLS_AUTORECONF=yes
-
-inherit autotools-utils
-
-DESCRIPTION="A variant ascertainment algorithm that can be used to detect SNPs, indels, and other polymorphisms"
-HOMEPAGE="http://www.broadinstitute.org/science/programs/genome-biology/crd/"
-SRC_URI="
-       ftp://ftp.broad.mit.edu/pub/crd/VAAL/VAAL.${PV}.tgz
-       ftp://ftp.broad.mit.edu/pub/crd/VAAL/VAAL_manual.doc"
-
-LICENSE="Whitehead-MIT"
-SLOT="0"
-KEYWORDS="amd64"
-IUSE="openmp"
-
-DEPEND=">=dev-libs/boost-1.41.0-r3"
-RDEPEND="${DEPEND}"
-
-PATCHES=(
-       "${FILESDIR}"/${P}-respect-flags.patch
-       "${FILESDIR}"/${P}-gcc47.patch
-)
-
-DOCS=( "${DISTDIR}/VAAL_manual.doc" )
-
-S="${WORKDIR}/vaal-33805"
-
-src_prepare() {
-       sed \
-               -e '/COPYING/d' \
-               -i src/Makefile.am || die
-
-       sed \
-               -e '/AC_OPENMP_CEHCK/d' \
-               -i configure.ac || die
-       autotools-utils_src_prepare
-}
-
-src_configure(){
-       local myeconfargs=( $(use_enable openmp) )
-       autotools-utils_src_configure
-}