Version Bump sci-chemistry/aria-2.3.2, 379153

Package-Manager: portage-2.2.0_alpha51/cvs/Linux x86_64

diff --git a/sci-chemistry/aria/ChangeLog b/sci-chemistry/aria/ChangeLog
index fb4a32b09d3cef15d5976f3997b787e897c79755..f1c3eadf41f3bec04557864fdb5e8d8f0f8d4492 100644 (file)
--- a/sci-chemistry/aria/ChangeLog
+++ b/sci-chemistry/aria/ChangeLog
@@ -1,6 +1,12 @@
 # ChangeLog for sci-chemistry/aria
-# Copyright 1999-2010 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/aria/ChangeLog,v 1.7 2010/11/18 17:10:04 jlec Exp $
+# Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/aria/ChangeLog,v 1.8 2011/08/29 15:28:43 jlec Exp $
+
+*aria-2.3.2 (29 Aug 2011)
+
+  29 Aug 2011; Justin Lecher <jlec@gentoo.org> aria-2.3.1.ebuild,
+  +aria-2.3.2.ebuild, metadata.xml:
+  Version Bump sci-chemistry/aria-2.3.2, 379153
 
   18 Nov 2010; Justin Lecher <jlec@gentoo.org> -files/2.2_p2-numpy.patch,
   -files/2.2_p2-test.patch, -files/sa_ls_cool2.patch, -aria-2.2_p2.ebuild:

diff --git a/sci-chemistry/aria/Manifest b/sci-chemistry/aria/Manifest
index c4432d1356085eb10b9ddb64a5ec83446c109202..e78710569f5a15db85986a11db77157aab144211 100644 (file)
--- a/sci-chemistry/aria/Manifest
+++ b/sci-chemistry/aria/Manifest
@@ -1,14 +1,16 @@
 -----BEGIN PGP SIGNED MESSAGE-----
-Hash: SHA1
+Hash: SHA512
 
 DIST aria2.3.1.tar.gz 1833973 RMD160 f2ee0bfc7e3164b5c34c81abb74256c5d76f53d7 SHA1 b257094bdaf6ba5b64645b8251d9243654e6d0fc SHA256 cc45ed2d66182cf0ee197a7cf3bc7edd8d5043d95cdcd19e1cec9aeb82c2fdbc
-EBUILD aria-2.3.1.ebuild 2037 RMD160 e1490118f42cc833f018a6e7653afd2ea7b057e2 SHA1 999e6749c399601b443cb60c914ae6ae06de7fbe SHA256 81e57e81e06114cca000563c40f4f25430fcd6d4e2ed98589dc1a99681fe326d
-MISC ChangeLog 1073 RMD160 50d0f1fad7bc86e686924331cfff2709b5ad2295 SHA1 61ee3fddca23c37bfd61e1204b4bce05c6d1360e SHA256 3a93b41575f8b2c235d10b3543559ffbb4e664ba1b415dfd90caa3944219c7e4
-MISC metadata.xml 216 RMD160 04a6fc4e2160b439296b52aa97d5b7d83af75508 SHA1 9561c9e6eada6aac9b503407917900529ce703e9 SHA256 24f5c205c2655ef27138c8aa087701626f5b4c666229c9ef7fe814e63ea2e776
+DIST aria2.3.2.tar.gz 1836270 RMD160 cd96f19c7a229694d561824dcca9ee22845c6a4f SHA1 74fc1cb6640b2a3f97851ac88042023f1a9c07ce SHA256 30727ea8bdc2e3b44e5970545008fcfa07fa59aa28b76824956a2aa71daa9615
+EBUILD aria-2.3.1.ebuild 2022 RMD160 e176a7b25c8d06287c91bb2c4d97f0d160dcc6d5 SHA1 28677a59f666d2ec9173ae86cfac37bc4a76f719 SHA256 0a83e234e39fbff3ffa65f21df768b7e0fea23ac13ad17008ab72e6103e3c96d
+EBUILD aria-2.3.2.ebuild 2022 RMD160 cd4b143087256e7e3f70f74f21d0638222bab866 SHA1 c3e2775845d0c1f869e5fb67cb0615585474c784 SHA256 696304d2e14b5f89924a4b14b1b015167ed6b73ae096a30b9aba38b9a7385efd
+MISC ChangeLog 1251 RMD160 56dec14841a19f9eb5a9556797f2bb1527d8d0c6 SHA1 cda64c5e01d4d6c9f8bf861dacb24dd006032bfa SHA256 a18d7bed660ba5775570608d9868bf4471754360c530e865ba9597c69056885d
+MISC metadata.xml 219 RMD160 e9da2d4271f89b9dbac478d145a519318f0f3314 SHA1 6d4a101013d6a40cd61cb2d8c6b517c443013bc7 SHA256 0be94b46df4c9a73494034f33b1371769951f52890e5c857ebe1dc9bc729d0a8
 -----BEGIN PGP SIGNATURE-----
-Version: GnuPG v2.0.16 (GNU/Linux)
+Version: GnuPG v2.0.18 (GNU/Linux)
 
-iEYEARECAAYFAkzlXfEACgkQgAnW8HDreRaFAwCgk1kctwtZnASz95sN6rUqASWw
-8HEAoMk9JGfUIBKGrXALL6QzYAh4Mwzw
-=pD3y
+iEYEAREKAAYFAk5bsDEACgkQgAnW8HDreRbXKgCeNhOaWp/VIi/NKevnDRAIGW3n
+DpkAn3JhQLEWfYmwF3/ZJEXJZNTx7UsA
+=0oFQ
 -----END PGP SIGNATURE-----

diff --git a/sci-chemistry/aria/aria-2.3.1.ebuild b/sci-chemistry/aria/aria-2.3.1.ebuild
index 8139857b752e072aa22ac71dd822a4247da04039..f7f9b9af39dcf2dc77a606d70354c2c646d45572 100644 (file)
--- a/sci-chemistry/aria/aria-2.3.1.ebuild
+++ b/sci-chemistry/aria/aria-2.3.1.ebuild
@@ -1,16 +1,17 @@
-# Copyright 1999-2010 Gentoo Foundation
+# Copyright 1999-2011 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/aria/aria-2.3.1.ebuild,v 1.4 2010/07/22 07:08:44 jlec Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/aria/aria-2.3.1.ebuild,v 1.5 2011/08/29 15:28:43 jlec Exp $
+
+EAPI=3
 
-EAPI="3"
 PYTHON_DEPEND="2"
 PYTHON_USE_WITH="tk"
 
-inherit base python eutils versionator
+inherit base eutils python versionator
 
 MY_P="${PN}$(get_version_component_range 1-2 ${PV})"
 
-DESCRIPTION="Software for automated NOE assignment and NMR structure calculation."
+DESCRIPTION="Automated NOE assignment and NMR structure calculation"
 HOMEPAGE="http://aria.pasteur.fr/"
 SRC_URI="http://aria.pasteur.fr/archives/${MY_P}.1.tar.gz"
 

diff --git a/sci-chemistry/aria/aria-2.3.2.ebuild b/sci-chemistry/aria/aria-2.3.2.ebuild
new file mode 100644 (file)
index 0000000..ab4ea1e
--- /dev/null
+++ b/sci-chemistry/aria/aria-2.3.2.ebuild
@@ -0,0 +1,88 @@
+# Copyright 1999-2011 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/aria/aria-2.3.2.ebuild,v 1.1 2011/08/29 15:28:43 jlec Exp $
+
+EAPI=3
+
+PYTHON_DEPEND="2"
+PYTHON_USE_WITH="tk"
+
+inherit base eutils python versionator
+
+MY_P="${PN}$(get_version_component_range 1-2 ${PV})"
+
+DESCRIPTION="Automated NOE assignment and NMR structure calculation"
+HOMEPAGE="http://aria.pasteur.fr/"
+SRC_URI="http://aria.pasteur.fr/archives/${MY_P}.2.tar.gz"
+
+SLOT="0"
+LICENSE="cns"
+KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
+IUSE="examples"
+
+RDEPEND="
+       sci-chemistry/clashlist
+       sci-chemistry/procheck
+       sci-libs/clashscore-db
+       dev-python/numpy
+       dev-python/matplotlib[tk]
+       >=sci-chemistry/cns-1.2.1-r3[aria,openmp]
+       >=dev-lang/tk-8.3
+       >=sci-chemistry/ccpn-2.0.5
+       >=dev-tcltk/tix-8.1.4"
+DEPEND="${RDEPEND}"
+
+RESTRICT="fetch"
+
+S="${WORKDIR}/${MY_P}"
+
+pkg_nofetch(){
+       einfo "Go to ${HOMEPAGE}, download ${A}"
+       einfo "and place it in ${DISTDIR}"
+}
+
+src_test(){
+       export CCPNMR_TOP_DIR="${EPREFIX}"/$(python_get_sitedir)
+       export PYTHONPATH=.:${CCPNMR_TOP_DIR}/ccpn/python
+       $(PYTHON) check.py || die
+}
+
+src_install(){
+       insinto "$(python_get_sitedir)/${PN}"
+       doins -r src aria2.py || die "failed to install ${PN}"
+       insinto "$(python_get_sitedir)/${PN}"/cns
+       doins -r cns/{protocols,toppar,src/helplib} || die "failed to install cns part"
+
+       if use examples; then
+               insinto /usr/share/${P}/
+               doins -r examples || die
+       fi
+
+       # ENV
+       cat >> "${T}"/20aria <<- EOF
+       ARIA2="${EPREFIX}/$(python_get_sitedir)/${PN}"
+       EOF
+
+       doenvd "${T}"/20aria
+
+       # Launch Wrapper
+       cat >> "${T}"/aria <<- EOF
+       #!/bin/sh
+       export CCPNMR_TOP_DIR="${EPREFIX}/$(python_get_sitedir)"
+       export PYTHONPATH="${EPREFIX}/$(python_get_sitedir)/ccpn/python"
+       exec "$(PYTHON)" -O "\${ARIA2}"/aria2.py \$@
+       EOF
+
+       dobin "${T}"/aria || die "failed to install wrapper"
+       dosym aria /usr/bin/aria2
+
+       dodoc README || die
+}
+
+pkg_postinst() {
+       python_mod_optimize ${PN}
+}
+
+pkg_postrm() {
+       python_mod_cleanup ${PN}
+}

diff --git a/sci-chemistry/aria/metadata.xml b/sci-chemistry/aria/metadata.xml
index c6856dc7f2cfbe27ea28e2fb6075708f8d85f136..210ad0db014cffd611ad3e2a915dac5ae225448a 100644 (file)
--- a/sci-chemistry/aria/metadata.xml
+++ b/sci-chemistry/aria/metadata.xml
@@ -1,8 +1,8 @@
 <?xml version="1.0" encoding="UTF-8"?>
 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
 <pkgmetadata>
-<herd>sci</herd>
-<maintainer>
-  <email>jlec@gentoo.org</email>
-</maintainer>
+       <herd>sci</herd>
+       <maintainer>
+               <email>jlec@gentoo.org</email>
+       </maintainer>
 </pkgmetadata>