sci-biology/qrna: DEPEND on sci-biology/hmmer:2

Closes: https://github.com/gentoo/gentoo/pull/7134

diff --git a/sci-biology/qrna/qrna-2.0.3c-r3.ebuild b/sci-biology/qrna/qrna-2.0.3c-r3.ebuild
new file mode 100644 (file)
index 0000000..5c580a2
--- /dev/null
+++ b/sci-biology/qrna/qrna-2.0.3c-r3.ebuild
@@ -0,0 +1,58 @@
+# Copyright 1999-2017 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=6
+
+inherit toolchain-funcs
+
+DESCRIPTION="Prototype ncRNA genefinder"
+HOMEPAGE="http://selab.janelia.org/software.html"
+SRC_URI="mirror://gentoo/${P}.tar.bz2"
+
+LICENSE="GPL-2"
+SLOT="0"
+KEYWORDS="~amd64 ~x86"
+IUSE=""
+
+RDEPEND="
+       dev-lang/perl
+       sci-biology/hmmer:2"
+DEPEND="${RDEPEND}"
+
+PATCHES=(
+       "${FILESDIR}"/${P}-glibc-2.10.patch
+       "${FILESDIR}"/${P}-ldflags.patch
+)
+
+src_prepare() {
+       default
+       sed \
+               -e "s:^CC.*:CC = $(tc-getCC):" \
+               -e "/^AR/s:ar:$(tc-getAR):g" \
+               -e "/^RANLIB/s:ranlib:$(tc-getRANLIB):g" \
+               -e "/CFLAGS/s:=.*$:= ${CFLAGS}:" \
+               -i {src,squid,squid02}/Makefile || die
+       rm -v squid*/*.a || die
+}
+
+src_compile() {
+       local d
+       for d in squid squid02 src; do
+               emake -C ${d}
+       done
+}
+
+src_install() {
+       dobin src/{cfgbuild,eqrna,eqrna_sample,rnamat_main} scripts/*
+
+       newdoc 00README README
+       dodoc -r documentation/.
+
+       insinto /usr/share/${PN}/data
+       doins -r lib/.
+       insinto /usr/share/${PN}/demos
+       doins -r Demos/.
+
+       # Sets the path to the QRNA data files
+       doenvd "${FILESDIR}"/26qrna
+}