+++ /dev/null
-# ChangeLog for sci-chemistry/webmo
-# Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/webmo/ChangeLog,v 1.19 2011/06/27 05:30:11 jlec Exp $
-
- 27 Jun 2011; Justin Lecher <jlec@gentoo.org> webmo-6.1.010.ebuild,
- webmo-7.0.003.ebuild, webmo-8.0.010.ebuild:
- Added fetch restriction and dropped keywords
-
- 25 Jun 2011; Justin Lecher <jlec@gentoo.org> webmo-6.1.010.ebuild,
- webmo-7.0.003.ebuild, webmo-8.0.010.ebuild, metadata.xml:
- define RDEPEND
-
- 29 May 2009; Donnie Berkholz <dberkholz@gentoo.org>; webmo-8.0.010.ebuild:
- Keyword ~amd64.
-
- 26 May 2009; Arfrever Frehtes Taifersar Arahesis <arfrever@gentoo.org>
- webmo-6.1.010.ebuild, webmo-7.0.003.ebuild, webmo-8.0.010.ebuild:
- Add pkg_setup().
-
-*webmo-8.0.010 (15 Feb 2008)
-
- 15 Feb 2008; Donnie Berkholz <dberkholz@gentoo.org>;
- +files/8.0.010-add-gamess-data-directory.patch,
- +files/8.0.010-gentoo-locations.patch, +webmo-8.0.010.ebuild:
- Bump.
-
- 05 Feb 2008; Benedikt Böhm <hollow@gentoo.org> webmo-6.1.010.ebuild,
- webmo-7.0.003.ebuild:
- merge from webapps overlay wrt #208584
-
- 03 Feb 2008; Jakub Moc <jakub@gentoo.org> webmo-6.1.010.ebuild,
- webmo-7.0.003.ebuild:
- Fix apache dependencies wrt Bug 208584; fix quoting, einfo -> elog
-
- 29 Jul 2007; Christian Heim <phreak@gentoo.org> webmo-6.1.010.ebuild,
- webmo-7.0.003.ebuild:
- Fixing the DEPEND/RDEPEND for the move of net-www/apache to
- www-servers/apache (#78622).
-
-*webmo-7.0.003 (08 May 2007)
-
- 08 May 2007; Donnie Berkholz <dberkholz@gentoo.org>;
- +files/7.0.003-gentoo-locations.patch, +webmo-7.0.003.ebuild:
- New features in WebMO version 7.0 include:
- * Improved molecular mechanics for generating initial geometries
- * Improved Editor clean-up for charged species and/or octet rule exceptions
- * Automatic diagnosis and reporting of common causes of job failure
- * JPEG image capture of molecular and spectral images
- * Database storage of jobs and users for improved performance and scalability
- * New administrative interface
- * Many user interface enhancements and bug fixes
-
- 20 Sep 2006; Donnie Berkholz <dberkholz@gentoo.org>; metadata.xml:
- (#148281) Change herd to sci-chemistry from sci.
-
- 05 Aug 2006; Donnie Berkholz <dberkholz@gentoo.org>; metadata.xml:
- Remove myself as maintainer, anyone feel free to work on this, although I'll
- continue to do so as well.
-
- 07 Jul 2006; Donnie Berkholz <dberkholz@gentoo.org>; metadata.xml:
- Update to my new email address.
-
- 20 Jun 2006; Donnie Berkholz <dberkholz@gentoo.org>; webmo-6.1.010.ebuild:
- Add a warning about overwriting info with etc-update.
-
- 20 Jun 2006; Donnie Berkholz <dberkholz@gentoo.org>;
- -webmo-6.0.003.ebuild:
- Pull old version.
-
-*webmo-6.1.010 (20 Jun 2006)
-
- 20 Jun 2006; Donnie Berkholz <dberkholz@gentoo.org>; files/reconfig,
- +webmo-6.1.010.ebuild:
- Bump. Significant enhancements to reconfig script to handle webapp-config
- upgrades properly via etc-update.
-
- 23 Feb 2006; Donnie Berkholz <dberkholz@gentoo.org>; webmo-6.0.003.ebuild:
- Remove redundant src_compile(), reported by ciaranm.
-
- 04 Dec 2005; Donnie Berkholz <dberkholz@gentoo.org>; files/reconfig:
- Don't overwrite the actual .int file, copy into ._cfg* for etc-update.
-
- 04 Dec 2005; Donnie Berkholz <dberkholz@gentoo.org>; +files/reconfig:
- Add hook script, to be run when installing to live host.
-
- 04 Dec 2005; Donnie Berkholz <dberkholz@gentoo.org>;
- -files/dont-be-interactive-if-root.patch,
- +files/dont-be-interactive-or-diagnose.patch,
- -files/dont-check-unneeded-things.patch, webmo-6.0.003.ebuild:
- Turn 2 patches into a single one with 4 lines of changes.
-
-*webmo-6.0.003 (04 Dec 2005)
-
- 04 Dec 2005; Donnie Berkholz <dberkholz@gentoo.org>;
- +files/add-gamess-data-directory.patch,
- +files/dont-be-interactive-if-root.patch,
- +files/dont-check-unneeded-things.patch, +files/gentoo-locations.patch,
- +metadata.xml, +webmo-6.0.003.ebuild:
- Add a Web interface to a number of computational chemistry programs. Ones in
- portage include mopac7, gamess and tinker. Also works for Gaussian, NWChem,
- QChem, Molpro, etc. What needs work: reinstallations without screwing the
- old configuration, and the reconfig script so editing globals.int isn't
- required.
-
+++ /dev/null
------BEGIN PGP SIGNED MESSAGE-----
-Hash: SHA1
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-DIST WebMO.7.0.003.tar.gz 1491250 RMD160 42a73223370ad5e6e5b0baca95c9b3a1b01a8a09 SHA1 63f125d118610a9e40cea8fa14200675d5be1c6a SHA256 41018522a78f752bf07ad4ae6798c9eac0d678aba7d1f71f7c6dd5c4f00b2435
-DIST WebMO.8.0.010.tar.gz 1350339 RMD160 8a266c3f718e8e67bac237703e0e53380f8c010c SHA1 e6987b67a9d5316cb92e4a712e8620a78eb349ad SHA256 e410bb63e07ecc34bd0ee3d0325055e730902dd09bb28c2e9469fafbfa2c0071
-EBUILD webmo-6.1.010.ebuild 3494 RMD160 326775e6ebe498756e4956d1e11b0085adac71fb SHA1 834b1f5dc3961d09ba31501878c2fe0944465a1c SHA256 72cefd565973544fef014185fee36ee29668a7f4e844bc0e19dade0debd9f909
-EBUILD webmo-7.0.003.ebuild 3500 RMD160 fda0e3291a517c7fbbbf3f8ff87f566befbf797f SHA1 cfc55629b9c9a82dd54269842b00c1d6ccda9c18 SHA256 813619040f015d2db1b08a89d7f8e0e7547e1e18824d94fd9627b8ff46036e38
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+++ /dev/null
-diff -urN WebMO.install.orig/cgi-bin/interfaces/gamess.int.disabled WebMO.install/cgi-bin/interfaces/gamess.int.disabled
---- WebMO.install.orig/cgi-bin/interfaces/gamess.int.disabled 2007-05-07 23:31:24.000000000 -0700
-+++ WebMO.install/cgi-bin/interfaces/gamess.int.disabled 2007-05-07 23:32:19.000000000 -0700
-@@ -2,7 +2,7 @@
- interfaceDescription{'gamess_admin'}="Edit preferences specific to Gamess"
- interfaceDescription{'gamess_name'}="Gamess"
- gamessVersion="2006"
--gamessGMSPATH="/usr/local/gamess"
-+gamessGMSPATH="/usr/bin"
- gamessBinary="gamess.00.x"
- gamessDdikick="ddikick.x"
- cpuMin="0"
-diff -urN WebMO.install.orig/cgi-bin/interfaces/mopac.int.disabled WebMO.install/cgi-bin/interfaces/mopac.int.disabled
---- WebMO.install.orig/cgi-bin/interfaces/mopac.int.disabled 2007-05-07 23:31:24.000000000 -0700
-+++ WebMO.install/cgi-bin/interfaces/mopac.int.disabled 2007-05-07 23:31:43.000000000 -0700
-@@ -2,8 +2,8 @@
- interfaceDescription{'mopac_admin'}="Edit preferences specific to Mopac"
- interfaceDescription{'mopac_name'}="Mopac"
- mopacVersion="7"
--mopacPath="/usr/local/mopac7/mopac.exe"
--mopacScratch="/scratch"
-+mopacPath="/usr/bin/mopac7"
-+mopacScratch="/tmp"
- mopacExternal="/usr/local/mopac7"
- cpuMin="0"
- cpuMax="100"
-diff -urN WebMO.install.orig/cgi-bin/interfaces/tinker.int.disabled WebMO.install/cgi-bin/interfaces/tinker.int.disabled
---- WebMO.install.orig/cgi-bin/interfaces/tinker.int.disabled 2007-05-07 23:31:24.000000000 -0700
-+++ WebMO.install/cgi-bin/interfaces/tinker.int.disabled 2007-05-07 23:31:43.000000000 -0700
-@@ -2,9 +2,9 @@
- interfaceDescription{'tinker_admin'}="Edit preferences specific to Tinker"
- interfaceDescription{'tinker_name'}="Tinker"
- tinkerVersion="4.2"
--tinkerBinDir="/usr/local/tinker/bin"
--tinkerBinExt="x"
--tinkerParamDir="/usr/local/tinker/params"
-+tinkerBinDir="/usr/bin"
-+tinkerBinExt=""
-+tinkerParamDir="/usr/share/tinker/params"
- cpuMin="0"
- cpuMax="100"
- cpuDefault="100"
+++ /dev/null
-diff -ur WebMO.install.orig/cgi-bin/interfaces/gamess.int.disabled WebMO.install/cgi-bin/interfaces/gamess.int.disabled
---- WebMO.install.orig/cgi-bin/interfaces/gamess.int.disabled 2008-02-15 00:37:31.000000000 -0800
-+++ WebMO.install/cgi-bin/interfaces/gamess.int.disabled 2008-02-15 00:37:56.000000000 -0800
-@@ -3,6 +3,7 @@
- interfaceDescription{'gamess_name'}="Gamess"
- gamessVersion="2007"
- gamessGMSPATH="/usr/bin"
-+gamessDATAPATH="/usr/share/gamess/ericfmt"
- gamessBinary="gamess.00.x"
- gamessDdikick="ddikick.x"
- cpuMin="0"
-diff -ur WebMO.install.orig/cgi-bin/run_gamess.cgi WebMO.install/cgi-bin/run_gamess.cgi
---- WebMO.install.orig/cgi-bin/run_gamess.cgi 2008-02-15 00:37:31.000000000 -0800
-+++ WebMO.install/cgi-bin/run_gamess.cgi 2008-02-15 00:38:12.000000000 -0800
-@@ -30,7 +30,7 @@
- $ENV{'IRCDATA'} = $output_file.".irc";
- $ENV{'PUNCH'} = $output_file.".dat";
- $ENV{'INPUT'} = "$input_file.inp";
--$ENV{'ERICFMT'} = "$gamessGMSPATH/ericfmt.dat";
-+$ENV{'ERICFMT'} = "$gamessDATAPATH/ericfmt.dat";
- $ENV{'PATH'} = $ENV{'PATH'}.":".$gamessGMSPATH;
- $ENV{'DDI_RSH'}=$serverShell;
-
-diff -ur WebMO.install.orig/source/gamessmgr_admin.html WebMO.install/source/gamessmgr_admin.html
---- WebMO.install.orig/source/gamessmgr_admin.html 2008-02-15 00:37:31.000000000 -0800
-+++ WebMO.install/source/gamessmgr_admin.html 2008-02-15 00:38:57.000000000 -0800
-@@ -30,10 +30,14 @@
- <TD><INPUT TYPE="text" NAME="gamessVersion" VALUE="<PERL>$gamessVersion</PERL>" SIZE=50></TD>
- </TR>
- <TR>
-- <TD><B>GAMESS directory</B></TD>
-+ <TD><B>GAMESS binary directory</B></TD>
- <TD><INPUT TYPE="text" NAME="gamessGMSPATH" VALUE="<PERL>$gamessGMSPATH</PERL>" SIZE=50></TD>
- </TR>
- <TR>
-+ <TD><B>GAMESS data directory</B></TD>
-+ <TD><INPUT TYPE="text" NAME="gamessDATAPATH" VALUE="<PERL>$gamessDATAPATH</PERL>" SIZE=50></TD>
-+ </TR>
-+ <TR>
- <TD><B>GAMESS binary (name, not path)</B></TD>
- <TD><INPUT TYPE="text" NAME="gamessBinary" VALUE="<PERL>$gamessBinary</PERL>" SIZE=50></TD>
- </TR>
+++ /dev/null
-diff -ur WebMO.install.orig/cgi-bin/interfaces/gamess.int.disabled WebMO.install/cgi-bin/interfaces/gamess.int.disabled
---- WebMO.install.orig/cgi-bin/interfaces/gamess.int.disabled 2008-02-15 00:35:02.000000000 -0800
-+++ WebMO.install/cgi-bin/interfaces/gamess.int.disabled 2008-02-15 00:35:28.000000000 -0800
-@@ -2,7 +2,7 @@
- interfaceDescription{'gamess_admin'}="Edit preferences specific to Gamess"
- interfaceDescription{'gamess_name'}="Gamess"
- gamessVersion="2007"
--gamessGMSPATH="/usr/local/gamess"
-+gamessGMSPATH="/usr/bin"
- gamessBinary="gamess.00.x"
- gamessDdikick="ddikick.x"
- cpuMin="0"
-diff -ur WebMO.install.orig/cgi-bin/interfaces/mopac.int.disabled WebMO.install/cgi-bin/interfaces/mopac.int.disabled
---- WebMO.install.orig/cgi-bin/interfaces/mopac.int.disabled 2008-02-15 00:35:02.000000000 -0800
-+++ WebMO.install/cgi-bin/interfaces/mopac.int.disabled 2008-02-15 00:35:42.000000000 -0800
-@@ -2,7 +2,7 @@
- interfaceDescription{'mopac_admin'}="Edit preferences specific to Mopac"
- interfaceDescription{'mopac_name'}="Mopac"
- mopacVersion="7"
--mopacPath="/usr/local/mopac7/mopac.exe"
-+mopacPath="/usr/bin/mopac7"
- mopacExternal="/usr/local/mopac7"
- cpuMin="0"
- cpuMax="100"
-diff -ur WebMO.install.orig/cgi-bin/interfaces/tinker.int.disabled WebMO.install/cgi-bin/interfaces/tinker.int.disabled
---- WebMO.install.orig/cgi-bin/interfaces/tinker.int.disabled 2008-02-15 00:35:02.000000000 -0800
-+++ WebMO.install/cgi-bin/interfaces/tinker.int.disabled 2008-02-15 00:36:02.000000000 -0800
-@@ -2,9 +2,9 @@
- interfaceDescription{'tinker_admin'}="Edit preferences specific to Tinker"
- interfaceDescription{'tinker_name'}="Tinker"
- tinkerVersion="4.2"
--tinkerBinDir="/usr/local/tinker/bin"
--tinkerBinExt="x"
--tinkerParamDir="/usr/local/tinker/params"
-+tinkerBinDir="/usr/bin"
-+tinkerBinExt=""
-+tinkerParamDir="/usr/share/tinker/params"
- cpuMin="0"
- cpuMax="100"
- cpuDefault="100"
+++ /dev/null
-diff -urN WebMO.install.orig/cgi-bin/interfaces/gamess.int.disabled WebMO.install/cgi-bin/interfaces/gamess.int.disabled
---- WebMO.install.orig/cgi-bin/interfaces/gamess.int.disabled 2005-12-03 14:58:39.000000000 -0800
-+++ WebMO.install/cgi-bin/interfaces/gamess.int.disabled 2005-12-03 14:58:59.000000000 -0800
-@@ -3,6 +3,7 @@
- interfaceDescription{'gamess_name'}="Gamess"
- gamessVersion="Unknown"
- gamessGMSPATH="/usr/bin"
-+gamessDATAPATH="/usr/share/gamess/ericfmt"
- gamessBinary="gamess.00.x"
- gamessDdikick="ddikick.x"
- cpuMin="0"
-diff -urN WebMO.install.orig/cgi-bin/run_gamess.cgi WebMO.install/cgi-bin/run_gamess.cgi
---- WebMO.install.orig/cgi-bin/run_gamess.cgi 2005-11-21 07:40:28.000000000 -0800
-+++ WebMO.install/cgi-bin/run_gamess.cgi 2005-12-03 14:54:54.000000000 -0800
-@@ -30,7 +30,7 @@
- $ENV{'IRCDATA'} = $output_file.".irc";
- $ENV{'PUNCH'} = $output_file.".dat";
- $ENV{'INPUT'} = "$input_file.inp";
--$ENV{'ERICFMT'} = "$gamessGMSPATH/ericfmt.dat";
-+$ENV{'ERICFMT'} = "$gamessDATAPATH/ericfmt.dat";
- $ENV{'PATH'} = $ENV{'PATH'}.":".$gamessGMSPATH;
-
- # if we are using PBS, find out which host we are running on
-diff -urN WebMO.install.orig/source/gamessmgr_admin.html WebMO.install/source/gamessmgr_admin.html
---- WebMO.install.orig/source/gamessmgr_admin.html 2005-11-21 07:40:28.000000000 -0800
-+++ WebMO.install/source/gamessmgr_admin.html 2005-12-03 14:55:00.000000000 -0800
-@@ -30,10 +30,14 @@
- <TD><INPUT TYPE="text" NAME="gamessVersion" VALUE="<PERL>$gamessVersion</PERL>" SIZE=50></TD>
- </TR>
- <TR>
-- <TD><B>Gamess directory</B></TD>
-+ <TD><B>Gamess binary directory</B></TD>
- <TD><INPUT TYPE="text" NAME="gamessGMSPATH" VALUE="<PERL>$gamessGMSPATH</PERL>" SIZE=50></TD>
- </TR>
- <TR>
-+ <TD><B>Gamess data directory (ericfmt)</B></TD>
-+ <TD><INPUT TYPE="text" NAME="gamessDATAPATH" VALUE="<PERL>$gamessDATAPATH</PERL>" SIZE=50></TD>
-+ </TR>
-+ <TR>
- <TD><B>Gamess binary (name, not path)</B></TD>
- <TD><INPUT TYPE="text" NAME="gamessBinary" VALUE="<PERL>$gamessBinary</PERL>" SIZE=50></TD>
- </TR>
+++ /dev/null
-diff -urN WebMO.install.orig/setup.pl WebMO.install/setup.pl
---- WebMO.install.orig/setup.pl 2005-11-21 07:40:28.000000000 -0800
-+++ WebMO.install/setup.pl 2005-12-04 00:39:41.000000000 -0800
-@@ -82,7 +82,7 @@
- #get a username
- my $username = `whoami`; chomp $username;
- my $homedir = $ENV{'HOME'} ne "" ? $ENV{'HOME'} : `echo ~`; chomp $homedir;
--if ($username eq "root")
-+if ($username eq "root" && !$unattended_setup)
- {
- print <<END;
-
-@@ -693,6 +693,7 @@
- print "finished\n";
-
- #run DIAGNOSE
-+if (!$unattended_setup) {
- print "Running diagnostic tests...";
- system("$perlPath scripts/diagnose.pl $cgiBase/interfaces/globals.int");
- print "finished\n";
-@@ -714,6 +715,7 @@
- system("$browsers[0] file:$cwd/diagnose.html");
- }
- }
-+}
-
- #setup computational servers
- mkdir "$cgiBase/servers", 0777;
+++ /dev/null
-diff -urN WebMO.install.orig/cgi-bin/interfaces/gamess.int.disabled WebMO.install/cgi-bin/interfaces/gamess.int.disabled
---- WebMO.install.orig/cgi-bin/interfaces/gamess.int.disabled 2005-11-21 07:40:28.000000000 -0800
-+++ WebMO.install/cgi-bin/interfaces/gamess.int.disabled 2005-12-03 14:56:09.000000000 -0800
-@@ -2,7 +2,7 @@
- interfaceDescription{'gamess_admin'}="Edit preferences specific to Gamess"
- interfaceDescription{'gamess_name'}="Gamess"
- gamessVersion="Unknown"
--gamessGMSPATH="/usr/local/gamess"
-+gamessGMSPATH="/usr/bin"
- gamessBinary="gamess.00.x"
- gamessDdikick="ddikick.x"
- cpuMin="0"
-diff -urN WebMO.install.orig/cgi-bin/interfaces/mopac.int.disabled WebMO.install/cgi-bin/interfaces/mopac.int.disabled
---- WebMO.install.orig/cgi-bin/interfaces/mopac.int.disabled 2005-11-21 07:40:28.000000000 -0800
-+++ WebMO.install/cgi-bin/interfaces/mopac.int.disabled 2005-12-03 14:57:07.000000000 -0800
-@@ -2,8 +2,8 @@
- interfaceDescription{'mopac_admin'}="Edit preferences specific to Mopac"
- interfaceDescription{'mopac_name'}="Mopac"
- mopacVersion="7"
--mopacPath="/usr/local/mopac7/mopac.exe"
--mopacScratch="/scratch"
-+mopacPath="/usr/bin/mopac7"
-+mopacScratch="/tmp"
- mopacExternal="/usr/local/mopac7"
- cpuMin="0"
- cpuMax="100"
-diff -urN WebMO.install.orig/cgi-bin/interfaces/tinker.int.disabled WebMO.install/cgi-bin/interfaces/tinker.int.disabled
---- WebMO.install.orig/cgi-bin/interfaces/tinker.int.disabled 2005-11-21 07:40:28.000000000 -0800
-+++ WebMO.install/cgi-bin/interfaces/tinker.int.disabled 2005-12-03 14:57:31.000000000 -0800
-@@ -2,9 +2,9 @@
- interfaceDescription{'tinker_admin'}="Edit preferences specific to Tinker"
- interfaceDescription{'tinker_name'}="Tinker"
- tinkerVersion="4.2"
--tinkerBinDir="/usr/local/tinker/bin"
--tinkerBinExt="x"
--tinkerParamDir="/usr/local/tinker/params"
-+tinkerBinDir="/usr/bin"
-+tinkerBinExt=""
-+tinkerParamDir="/usr/share/tinker/params"
- cpuMin="0"
- cpuMax="100"
- cpuDefault="100"
+++ /dev/null
-#!/bin/bash
-
-declare -i cfgnum
-
-if [ $1 = "install" ]; then
- FILE="${VHOST_CGIBINDIR}/webmo/interfaces/._cfg*_globals.int"
-
- sed -i \
- -e "s:^htmlBase.*:htmlBase=\"${VHOST_HTDOCSDIR}/webmo\":g" \
- -e "s:^cgiBase.*:cgiBase=\"${VHOST_CGIBINDIR}/webmo\" :g" \
- -e "s:userBase.*:userBase=\"${VHOST_ROOT}/webmo\":g" \
- ${FILE}
-
- pushd ${VHOST_CGIBINDIR}/webmo/interfaces > /dev/null
-
- # If a program is enabled, install .int.disabled changes to .int
- for file in *.disabled; do
- enabled_file=${file%.disabled}
- echo -n "Checking for enabled interface '${enabled_file}' ... "
- if [[ -e ${enabled_file} ]]; then
- echo "yes"
- for (( cfgnum=10#0000; cfgnum < 10#9999; cfgnum++ )); do
- # A number can't be padded with zero's, but a string can
- cfgstr=$(printf "%.4d" ${cfgnum})
- enabled_cfgfile=._cfg${cfgstr}_${enabled_file}
- if [[ ! -e ${enabled_cfgfile} ]]; then
- mv ${file} ${enabled_cfgfile}
- break
- fi
- done
- else
- echo "no"
- fi
- done
-
- # Handle ._cfg* files properly, whether interfaces are enabled or not
- for file in ._cfg*disabled; do
- realfile=${file#._cfg*_}
- enabled_file=${realfile%.disabled}
- # If interface is enabled, then rename the config file
- # But be considerate of other unmerged config files
- if [[ -e ${enabled_file} ]]; then
- cfgnum=${file%.disabled}
- cfgnum=${cfgnum#._cfg}
- cfgnum=10#${cfgnum%%_*}
- for (( ; cfgnum < 10#9999; cfgnum++ )); do
- # A number can't be padded with zero's, but a string can
- cfgstr=$(printf "%.4d" ${cfgnum})
- enabled_cfgfile=._cfg${cfgstr}_${enabled_file}
- if [[ ! -e ${enabled_cfgfile} ]]; then
- mv ${file} ${enabled_cfgfile}
- break
- fi
- done
- fi
- done
- popd > /dev/null
-else
- echo "done."
-fi
-
-if [ $1 = "clean" ]; then
- echo "Please examine the contents of the following directories"
- echo "and delete anything that is no longer necessary"
- echo
- echo ${VHOST_HTDOCSDIR}
- echo ${VHOST_CGIBINDIR}/webmo
- echo ${VHOST_ROOT}/webmo
-fi
+++ /dev/null
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
- <herd>sci-chemistry</herd>
-</pkgmetadata>
+++ /dev/null
-# Copyright 1999-2011 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/webmo/webmo-6.1.010.ebuild,v 1.7 2011/06/27 05:30:11 jlec Exp $
-
-inherit eutils webapp depend.apache
-
-MY_SRC_PN="WebMO"
-MY_SRC_P="${MY_SRC_PN}.${PV}"
-DESCRIPTION="Web-based interface to computational chemistry packages"
-HOMEPAGE="http://webmo.net/"
-SRC_URI="${MY_SRC_P}.tar.gz"
-
-LICENSE="WebMO"
-SLOT="${PVR}"
-KEYWORDS=""
-IUSE=""
-
-DEPEND="dev-lang/perl"
-RDEPEND="${DEPEND}"
-need_apache2
-
-RESTRICT="fetch"
-
-S="${WORKDIR}/${MY_SRC_PN}.install"
-
-pkg_setup() {
- webapp_pkg_setup
-}
-
-pkg_nofetch() {
- einfo "Go to http://webmo.net/ and register for a free license."
- einfo "Download ${SRC_URI} and place it in ${DISTDIR}."
-}
-
-src_unpack() {
- # We need a license number to proceed
- if [[ -z ${WEBMO_LICENSE} ]]; then
- msg="You must set WEBMO_LICENSE to your license number in make.conf."
- ewarn "$msg"
- die "$msg"
- fi
-
- # Check for invalid license values. Valid are dddd-dddd-dddd
- if [[ ${WEBMO_LICENSE} != [0-9][0-9][0-9][0-9]-[0-9][0-9][0-9][0-9]-[0-9][0-9][0-9][0-9] ]]; then
- msg="Invalid license format. Licenses should be DDDD-DDDD-DDDD (D is a digit)."
- ewarn "$msg"
- die "$msg"
- fi
-
- unpack ${A}
-
- # Set up program locations to match where portage installs them
- epatch "${FILESDIR}"/gentoo-locations.patch
-
- # Add a data directory for gamess, because WebMO expects everything
- # in one directory instead of FHS
- # (Depends on gentoo-locations.patch)
- epatch "${FILESDIR}"/add-gamess-data-directory.patch
-
- # Don't run diagnose.pl or ask about being root user
- epatch "${FILESDIR}"/dont-be-interactive-or-diagnose.patch
-
- # Make setup.conf
- create_setup_conf
-}
-
-src_install() {
- webapp_src_preinst
-
- # Install everything
- perl setup.pl || die "Check '${S}'/diagnose.html for errors"
-
- # Get ${D} out of main config file
- dosed "${MY_CGIBINDIR}/webmo/interfaces/globals.int"
-
- webapp_hook_script "${FILESDIR}"/reconfig
-
- local files=$(find "${D}"${MY_HOSTROOTDIR}/webmo "${D}"${MY_CGIBINDIR}/webmo/interfaces)
- # Add the directories themselves
- files="${files} ${MY_HOSTROOTDIR}/webmo ${MY_CGIBINDIR}/webmo/interfaces"
- files=${files//${D}/}
- for file in ${files}; do
- webapp_configfile "${file}"
- webapp_serverowned "${file}"
- done
-
- ebegin "Fixing permissions"
- pushd "${D}" > /dev/null
- find . -perm /o+w -type f | xargs fperms 664
- find . -perm /o+w -type d | xargs fperms 775
- popd > /dev/null
- eend 0
-
- webapp_src_install
-}
-
-pkg_postinst() {
- elog
- elog "Be sure that this line is uncommented in httpd.conf:"
- elog "AddHandle cgi-scripts .cgi"
- elog
- elog "The diagnose.pl script can be run if WebMO doesn't work properly."
- elog
- ewarn "Be careful never to overwrite your user, group or job databases"
- ewarn "when using etc-update after an upgrade."
-
- webapp_pkg_postinst
-}
-
-create_setup_conf() {
- local SETUP_CONF="${S}/setup.conf"
-
- echo_setup perlPath /usr/bin/perl "${SETUP_CONF}"
- echo_setup htmlBase "${D}${MY_HTDOCSDIR}" "${SETUP_CONF}"
- echo_setup url_htmlBase /webmo "${SETUP_CONF}"
- echo_setup cgiBase "${D}${MY_CGIBINDIR}/webmo" "${SETUP_CONF}"
- echo_setup url_cgiBase /cgi-bin/webmo "${SETUP_CONF}"
- echo_setup userBase "${D}${MY_HOSTROOTDIR}/webmo" "${SETUP_CONF}"
- echo_setup license "${WEBMO_LICENSE}" "${SETUP_CONF}"
-}
-
-# Takes three arguments:
-# 1: variable, 2: value, 3: file to echo them to
-echo_setup() {
- # All values must be double-quoted, so escape the inner quotes.
- echo "${1}=\"${2}\"" >> ${3}
-}
+++ /dev/null
-# Copyright 1999-2011 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/webmo/webmo-7.0.003.ebuild,v 1.6 2011/06/27 05:30:11 jlec Exp $
-
-inherit eutils webapp depend.apache
-
-MY_SRC_PN="WebMO"
-MY_SRC_P="${MY_SRC_PN}.${PV}"
-DESCRIPTION="Web-based interface to computational chemistry packages"
-HOMEPAGE="http://webmo.net/"
-SRC_URI="${MY_SRC_P}.tar.gz"
-
-LICENSE="WebMO"
-SLOT="${PVR}"
-KEYWORDS=""
-IUSE=""
-
-DEPEND="dev-lang/perl"
-RDEPEND="${DEPEND}"
-need_apache2
-
-RESTRICT="fetch"
-
-S="${WORKDIR}/${MY_SRC_PN}.install"
-
-pkg_setup() {
- webapp_pkg_setup
-}
-
-pkg_nofetch() {
- einfo "Go to http://webmo.net/ and register for a free license."
- einfo "Download ${SRC_URI} and place it in ${DISTDIR}."
-}
-
-src_unpack() {
- # We need a license number to proceed
- if [[ -z ${WEBMO_LICENSE} ]]; then
- msg="You must set WEBMO_LICENSE to your license number in make.conf."
- ewarn "$msg"
- die "$msg"
- fi
-
- # Check for invalid license values. Valid are dddd-dddd-dddd
- if [[ ${WEBMO_LICENSE} != [0-9][0-9][0-9][0-9]-[0-9][0-9][0-9][0-9]-[0-9][0-9][0-9][0-9] ]]; then
- msg="Invalid license format. Licenses should be DDDD-DDDD-DDDD (D is a digit)."
- ewarn "$msg"
- die "$msg"
- fi
-
- unpack ${A}
-
- # Set up program locations to match where portage installs them
- epatch "${FILESDIR}"/${PV}-gentoo-locations.patch
-
- # Add a data directory for gamess, because WebMO expects everything
- # in one directory instead of FHS
- # (Depends on gentoo-locations.patch)
- epatch "${FILESDIR}"/add-gamess-data-directory.patch
-
- # Don't run diagnose.pl or ask about being root user
- epatch "${FILESDIR}"/dont-be-interactive-or-diagnose.patch
-
- # Make setup.conf
- create_setup_conf
-}
-
-src_install() {
- webapp_src_preinst
-
- # Install everything
- perl setup.pl || die "Check '${S}'/diagnose.html for errors"
-
- # Get ${D} out of main config file
- dosed "${MY_CGIBINDIR}/webmo/interfaces/globals.int"
-
- webapp_hook_script "${FILESDIR}"/reconfig
-
- local files=$(find "${D}"${MY_HOSTROOTDIR}/webmo "${D}"${MY_CGIBINDIR}/webmo/interfaces)
- # Add the directories themselves
- files="${files} ${MY_HOSTROOTDIR}/webmo ${MY_CGIBINDIR}/webmo/interfaces"
- files=${files//${D}/}
- for file in ${files}; do
- webapp_configfile "${file}"
- webapp_serverowned "${file}"
- done
-
- ebegin "Fixing permissions"
- pushd "${D}" > /dev/null
- find . -perm /o+w -type f | xargs fperms 664
- find . -perm /o+w -type d | xargs fperms 775
- popd > /dev/null
- eend 0
-
- webapp_src_install
-}
-
-pkg_postinst() {
- elog
- elog "Be sure that this line is uncommented in httpd.conf:"
- elog "AddHandle cgi-scripts .cgi"
- elog
- elog "The diagnose.pl script can be run if WebMO doesn't work properly."
- elog
- ewarn "Be careful never to overwrite your user, group or job databases"
- ewarn "when using etc-update after an upgrade."
-
- webapp_pkg_postinst
-}
-
-create_setup_conf() {
- local SETUP_CONF="${S}/setup.conf"
-
- echo_setup perlPath /usr/bin/perl "${SETUP_CONF}"
- echo_setup htmlBase "${D}${MY_HTDOCSDIR}" "${SETUP_CONF}"
- echo_setup url_htmlBase /webmo "${SETUP_CONF}"
- echo_setup cgiBase "${D}${MY_CGIBINDIR}/webmo" "${SETUP_CONF}"
- echo_setup url_cgiBase /cgi-bin/webmo "${SETUP_CONF}"
- echo_setup userBase "${D}${MY_HOSTROOTDIR}/webmo" "${SETUP_CONF}"
- echo_setup license "${WEBMO_LICENSE}" "${SETUP_CONF}"
-}
-
-# Takes three arguments:
-# 1: variable, 2: value, 3: file to echo them to
-echo_setup() {
- # All values must be double-quoted, so escape the inner quotes.
- echo "${1}=\"${2}\"" >> ${3}
-}
+++ /dev/null
-# Copyright 1999-2011 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/webmo/webmo-8.0.010.ebuild,v 1.5 2011/06/27 05:30:11 jlec Exp $
-
-inherit eutils webapp depend.apache
-
-MY_SRC_PN="WebMO"
-MY_SRC_P="${MY_SRC_PN}.${PV}"
-DESCRIPTION="Web-based interface to computational chemistry packages"
-HOMEPAGE="http://webmo.net/"
-SRC_URI="${MY_SRC_P}.tar.gz"
-
-LICENSE="WebMO"
-SLOT="${PVR}"
-KEYWORDS=""
-IUSE=""
-
-DEPEND="dev-lang/perl"
-RDEPEND="${DEPEND}"
-need_apache2
-
-RESTRICT="fetch"
-
-S="${WORKDIR}/${MY_SRC_PN}.install"
-
-pkg_setup() {
- webapp_pkg_setup
-}
-
-pkg_nofetch() {
- einfo "Go to http://webmo.net/ and register for a free license."
- einfo "Download ${SRC_URI} and place it in ${DISTDIR}."
-}
-
-src_unpack() {
- # We need a license number to proceed
- if [[ -z ${WEBMO_LICENSE} ]]; then
- msg="You must set WEBMO_LICENSE to your license number in make.conf."
- ewarn "$msg"
- die "$msg"
- fi
-
- # Check for invalid license values. Valid are dddd-dddd-dddd
- if [[ ${WEBMO_LICENSE} != [0-9][0-9][0-9][0-9]-[0-9][0-9][0-9][0-9]-[0-9][0-9][0-9][0-9] ]]; then
- msg="Invalid license format. Licenses should be DDDD-DDDD-DDDD (D is a digit)."
- ewarn "$msg"
- die "$msg"
- fi
-
- unpack ${A}
-
- # Set up program locations to match where portage installs them
- epatch "${FILESDIR}"/8.0.010-gentoo-locations.patch
-
- # Add a data directory for gamess, because WebMO expects everything
- # in one directory instead of FHS
- # (Depends on gentoo-locations.patch)
- epatch "${FILESDIR}"/8.0.010-add-gamess-data-directory.patch
-
- # Don't run diagnose.pl or ask about being root user
- epatch "${FILESDIR}"/dont-be-interactive-or-diagnose.patch
-
- # Make setup.conf
- create_setup_conf
-}
-
-src_install() {
- webapp_src_preinst
-
- # Install everything
- perl setup.pl || die "Check '${S}'/diagnose.html for errors"
-
- # Get ${D} out of main config file
- dosed "${MY_CGIBINDIR}/webmo/interfaces/globals.int"
-
- webapp_hook_script "${FILESDIR}"/reconfig
-
- local files=$(find "${D}"${MY_HOSTROOTDIR}/webmo "${D}"${MY_CGIBINDIR}/webmo/interfaces)
- # Add the directories themselves
- files="${files} ${MY_HOSTROOTDIR}/webmo ${MY_CGIBINDIR}/webmo/interfaces"
- files=${files//${D}/}
- for file in ${files}; do
- webapp_configfile "${file}"
- webapp_serverowned "${file}"
- done
-
- ebegin "Fixing permissions"
- pushd "${D}" > /dev/null
- find . -perm /o+w -type f | xargs fperms 664
- find . -perm /o+w -type d | xargs fperms 775
- popd > /dev/null
- eend 0
-
- webapp_src_install
-}
-
-pkg_postinst() {
- elog
- elog "Be sure that this line is uncommented in httpd.conf:"
- elog "AddHandle cgi-scripts .cgi"
- elog
- elog "The diagnose.pl script can be run if WebMO doesn't work properly."
- elog
- ewarn "Be careful never to overwrite your user, group or job databases"
- ewarn "when using etc-update after an upgrade."
-
- webapp_pkg_postinst
-}
-
-create_setup_conf() {
- local SETUP_CONF="${S}/setup.conf"
-
- echo_setup perlPath /usr/bin/perl "${SETUP_CONF}"
- echo_setup htmlBase "${D}${MY_HTDOCSDIR}" "${SETUP_CONF}"
- echo_setup url_htmlBase /webmo "${SETUP_CONF}"
- echo_setup cgiBase "${D}${MY_CGIBINDIR}/webmo" "${SETUP_CONF}"
- echo_setup url_cgiBase /cgi-bin/webmo "${SETUP_CONF}"
- echo_setup userBase "${D}${MY_HOSTROOTDIR}/webmo" "${SETUP_CONF}"
- echo_setup license "${WEBMO_LICENSE}" "${SETUP_CONF}"
-}
-
-# Takes three arguments:
-# 1: variable, 2: value, 3: file to echo them to
-echo_setup() {
- # All values must be double-quoted, so escape the inner quotes.
- echo "${1}=\"${2}\"" >> ${3}
-}
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