Version bump

Package-Manager: portage-2.2.0_alpha74/cvs/Linux x86_64

diff --git a/sci-biology/GBrowse/ChangeLog b/sci-biology/GBrowse/ChangeLog
index 962c42fadde1d3a5ab1b9827c13d358dafa003ef..afd3e08877863ce694af27ad708db641ea769fe9 100644 (file)
--- a/sci-biology/GBrowse/ChangeLog
+++ b/sci-biology/GBrowse/ChangeLog
@@ -1,6 +1,11 @@
 # ChangeLog for sci-biology/GBrowse
 # Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/GBrowse/ChangeLog,v 1.1 2011/07/20 00:56:03 weaver Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/GBrowse/ChangeLog,v 1.2 2011/12/26 05:27:12 weaver Exp $
+
+*GBrowse-2.44 (26 Dec 2011)
+
+  26 Dec 2011; Andrey Kislyuk <weaver@gentoo.org> +GBrowse-2.44.ebuild:
+  Version bump
 
 *GBrowse-2.39 (20 Jul 2011)
 

diff --git a/sci-biology/GBrowse/GBrowse-2.44.ebuild b/sci-biology/GBrowse/GBrowse-2.44.ebuild
new file mode 100644 (file)
index 0000000..a8c3828
--- /dev/null
+++ b/sci-biology/GBrowse/GBrowse-2.44.ebuild
@@ -0,0 +1,68 @@
+# Copyright 1999-2011 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/GBrowse/GBrowse-2.44.ebuild,v 1.1 2011/12/26 05:27:12 weaver Exp $
+
+EAPI=4
+
+MODULE_AUTHOR=LDS
+inherit perl-module webapp
+
+DESCRIPTION="Generic Model Organism Database Project - The Generic Genome Browser"
+HOMEPAGE="http://gmod.org/wiki/GBrowse"
+KEYWORDS="~amd64 ~x86"
+IUSE="-minimal mysql postgres +sqlite"
+
+CDEPEND=">=sci-biology/bioperl-1.6.9
+       >=dev-perl/Bio-Graphics-2.09
+       >=dev-perl/GD-2.07
+       >=dev-perl/CGI-Session-4.02
+       dev-perl/IO-String
+       dev-perl/JSON
+       dev-perl/libwww-perl
+       dev-perl/Statistics-Descriptive
+       !minimal? (
+               dev-perl/Bio-Das
+               >=dev-perl/Bio-SamTools-1.20
+               dev-perl/Crypt-SSLeay
+               dev-perl/DB_File-Lock
+               dev-perl/DBI
+               mysql? ( dev-perl/DBD-mysql )
+               postgres? ( dev-perl/DBD-Pg )
+               sqlite? ( dev-perl/DBD-SQLite )
+               dev-perl/FCGI
+               dev-perl/File-NFSLock
+               dev-perl/GD-SVG
+               dev-perl/Net-OpenID-Consumer
+               dev-perl/Net-SMTP-SSL
+       )"
+#              >=dev-perl/Bio-DB-BigFile-1.00 - requires jklib to compile
+DEPEND="virtual/perl-Module-Build
+       dev-perl/Capture-Tiny
+       ${CDEPEND}"
+RDEPEND="${CDEPEND}"
+
+PATCHES=( "${FILESDIR}"/GBrowseInstall.pm-2.39.patch )
+
+src_configure() {
+       webapp_src_preinst
+
+#      myconf="--install_base=${D}/usr" or "--install_base=/opt/gbrowse"
+       myconf="--conf=/etc/gbrowse2"
+       myconf="${myconf} --htdocs=${MY_HTDOCSDIR}"
+       myconf="${myconf} --cgibin=${MY_CGIBINDIR}"
+       myconf="${myconf} --tmp=/var/tmp/gbrowse2"
+       myconf="${myconf} --persistent=/var/db/gbrowse2"
+       myconf="${myconf} --databases=/var/db/gbrowse2/databases"
+       myconf="${myconf} --installconf=no"
+       myconf="${myconf} --installetc=no"
+       perl-module_src_configure
+}
+
+src_install() {
+       dodir /var/tmp/gbrowse2
+       dodir /var/db/gbrowse2/sessions
+       dodir /var/db/gbrowse2/userdata
+       webapp_serverowned -R /var/tmp/gbrowse2 /var/db/gbrowse2
+       perl-module_src_install
+       webapp_src_install
+}

diff --git a/sci-biology/GBrowse/Manifest b/sci-biology/GBrowse/Manifest
index aa7cdeea3d67b14f855d4d8a614a5eb840e7ddfe..cda208289dbe84880f9fa04e79494652644e4bdb 100644 (file)
--- a/sci-biology/GBrowse/Manifest
+++ b/sci-biology/GBrowse/Manifest
@@ -3,13 +3,15 @@ Hash: SHA1
 
 AUX GBrowseInstall.pm-2.39.patch 2878 RMD160 24dc53700c23521fb0e892ed1d675142eefc2c65 SHA1 961c73f9a83c101932558cd28945cfe2e5cc4b7f SHA256 80a1aefac21c55c040e89028f736c058b35695cbb816e44f4465665cdd14f9ab
 DIST GBrowse-2.39.tar.gz 11969088 RMD160 47dd338a0b99632e77a532a3c27d0b9d9d514dca SHA1 2cc48cc1603aa3ae487c47259f9a896bec4eff8e SHA256 b4e76acfa1d8f64d5f227c3ba0258666928b4f357428549be85f05c944337d44
+DIST GBrowse-2.44.tar.gz 12009913 RMD160 96b644a8d7f665f6403db1e76648d9eaf5374b9c SHA1 b81220e4c45ee3dae7e40de43bd351037b3170f1 SHA256 c77d8e0311eab9d581b128ee16ba0921bc651a157b68c3aed2e5e86240f8f5dc
 EBUILD GBrowse-2.39.ebuild 1916 RMD160 83a3031201321d64d9f8f0f22956e9778a9b2b12 SHA1 a011f1d5e9b29676db6e41a5d5f6e28d70770e4b SHA256 be9a81871de7957a39407c31f9c5ef291b5d1e0a9698d2460a6b44ce2d68cc11
-MISC ChangeLog 507 RMD160 3b8bc809f1220a6384e2230374eaec6f60ad3d68 SHA1 99c8bb305dfe14a9981b397c7a0bc415692f32c1 SHA256 d414d7a8180d22107f48c760dfc9c4d7038d7e7fdaf94b52a077fa3f4653b599
+EBUILD GBrowse-2.44.ebuild 1915 RMD160 0ffe5507ba39218c2eee94aed049fdaabfc5ae60 SHA1 5492cd5c891e82e6d8f0debcb0a4783145c5b550 SHA256 c7a197c95bcf2ca51a53503e347879be496cab1a09252dd2cd6a4882e7d368ad
+MISC ChangeLog 624 RMD160 04aa002c91d094b79d67bba0c0dcd3dccd70b77b SHA1 98c848cfa513a19f0b645e5abe4c751ebd0c3812 SHA256 c062b92e248cd5be5405ed84bd5db37dd11a33649eee1541c32916085e952dc5
 MISC metadata.xml 352 RMD160 c409abbd5e93c39f874f62376148fa32b7b93dd2 SHA1 9c92894b7db29b6e74ac51e0acbe457bd6e523a5 SHA256 b4ac9f3ef6106473d6685685245180ff6191165751d8c83d033f7ef0e918e82f
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