# ChangeLog for sci-chemistry/namd
# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/namd/ChangeLog,v 1.21 2015/03/07 01:18:22 ottxor Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/namd/ChangeLog,v 1.22 2015/03/20 15:28:56 jlec Exp $
+
+ 20 Mar 2015; Justin Lecher <jlec@gentoo.org> -namd-2.7_beta2-r1.ebuild,
+ -namd-2.9.ebuild, metadata.xml, namd-2.10.ebuild, namd-2.9-r1.ebuild:
+ Fix tcl/tk slotting;drop old
*namd-2.10 (07 Mar 2015)
-----BEGIN PGP SIGNED MESSAGE-----
-Hash: SHA256
+Hash: SHA512
AUX namd-2.10-gentoo.patch 4636 SHA256 2bee11bb1bfa086c12acf84abf94e35c7bcba8dc269d80ce6aa20490b9ef6a0c SHA512 28ffbedb05d24a74e05a4f65424a25a4598e2172b7b4ab07fe84570e3162373e4e018f66077636bb097c6e0687666ac81dbb8b925a195f23c269829ebb9234c8 WHIRLPOOL 3616c28a38b92fe1d376fa413c6f565bd5727edfa821c98682c1cbc3834e95d1c1093c43ba99cb26904637d661c31a893c3f6e7a838b07c696c2bd3689795ab9
AUX namd-2.6-gentoo.patch 3650 SHA256 55fad22d757d83d786b279a50a724499fb915767ade827895d686df16fa829d9 SHA512 7a5e9274307784445808f84378f875a68821ef8db7c8ede76439ae4d74d00c618144dd520bc82c433b5c7e9a08d586363b028646a140db19036bfab060133abf WHIRLPOOL a72d7dd9776c4d1fd702a416107cd469268a9d31ab689ac4ef19f4ef8ef24081cdf86705ee9d3d4f5f21fa99d4c1ea4297d7707f40aacd44a6712db71bb9dd97
AUX namd-makefile-gentoo.patch 2804 SHA256 f3945ae8fff113286847d61a00d5a749b1c3a00b65394085e56ff47a0a209250 SHA512 fcf5f8880267a6738020f9cd5fea3739da8f87fac3a3030f383f883762cdd5e68b75c898d0ddcc6a23f791ddd35d6f60cc4ef6f7d2ce6dbd1709e2fce9a074de WHIRLPOOL 09cc03231626473059a36f33ed7a59688752680a798eebd6ee45990987e1ce8fcd913d4354e3b5ecc0ca63771764ea86c16d42af0118753e4618bc3b21087212
AUX namd-tcl-lib-gentoo.patch 576 SHA256 7a57497410f5791b1b9fa0535e66137bd1b4c5008e0253c7467bc40af7b6ac01 SHA512 c400437c475165f2e9aa22de3f44aaf21d226ba678cc021d3705b91239159ab702293b3212b5673fcd158e7e42248db1d1984be3bb95256bcca1962c632e9d27 WHIRLPOOL edcfd5dca373f6f040f3dcaab07abb8807989ef5db3cb97fc95307b842afb8af6f964879b7321689f02ad4b81dc087a655b4c2cf322570175ed4ef4878f12ab4
DIST NAMD_2.10_Source.tar.gz 9200234 SHA256 a5282c172524c2fbe6b9ba56f2de8c84f1093405c914ffbc70442dd0dd4e4289 SHA512 3712a03841fad76c502ac4e41469162ff78e6152560d0f6855d61d2b5583241a661e2a3e7446029b56a6f6f1100f25cb51b2c3df6571542397961d3bb625bc92 WHIRLPOOL b97e47c1d73d505620c26a2eca2e2e91807ebeff19e8820d9be7ea6ddd84c59cd5839846a18a2615ae993a1a6fc22b90e5080cf9d8a72aa412f6b81354e0f284
-DIST NAMD_2.7b2_Source.tar.gz 9094631 SHA256 5675eb08534a6e4ea7a59e52e949991b3ba42abd78b45a46976ac3d7ed3b8d67 SHA512 d6906ab8b6dcba42f1021acc59d52e7e3717cb3d236fc64d435f09ee929516fbca2656c8873535683f4a75d390943d67ec102e5192a0eee945f6a4e4bdfd9cf7 WHIRLPOOL 933e4eb50bcf6e9c4d7b06c941c350b33a1d00615fed6ae9c9b656d405ecd443b46cf926f0e9175a3feca6ee9f3e546f212b891fe895c126bcdf94e3e32436eb
DIST NAMD_2.9_Source.tar.gz 8814042 SHA256 9ba6a1f87d4600a62847728d7c223295be214f9a72b5bb62552f74d644108424 SHA512 0644814a2799b560d9dcf807ba0047325bc9f0a26e3831b0465d95180784f038d69595e036daac85d59cd919c92d11a0343031975d99deb1fa3052c8a649bdd6 WHIRLPOOL 5494ccb2ee2f2792fe52ad7dcfe6da9d11453f0a9b0859d30698dea56b00d92fae73465967f82bd708abee5cd4ff50b0a6ffde86451e859e2f515af203e09286
-EBUILD namd-2.10.ebuild 2639 SHA256 d3b8c7f4ecf03aa6fbcab7096908d908735b638002476f90d9763339d40498bf SHA512 cf1f2e5a753bccbb1b86d3eb6698667f395076ec00bd2ef4084e094ed3972f68b16cdafc66ff4b89b0d0027a45fda4406dd0aefcab219411f3389f65f6649d9f WHIRLPOOL d0ed062ab7c4c1882b518103709d271e4028e376a17b0c246768301c46a4eec0211d8613f96692f3156794376c4b858ab91b32d034b7b37d619c309424bb3df9
-EBUILD namd-2.7_beta2-r1.ebuild 2663 SHA256 5664e8d896f4eafa65e76860d283727997bf11c724f92c0d929cc1344fe2a1cc SHA512 edfb25ebe2565e7b1b5770f5fcb0ffd8a8cee00df09eaf4dfcddd440e9d370d866005b8b585129a8f804828986f4ba0aacf77a6f501afd5855596132bc6c52cb WHIRLPOOL d9f09d8146e051b1a5c0430c81d735a346889cef8cd710cbe2aaa16b829836cc200a7ed8d7b3116c4a92aea57dd3f9a11caad30fc607b78e8a68343d84b79667
-EBUILD namd-2.9-r1.ebuild 2632 SHA256 8f2b7bc3c42831d43f23ed2da57e4b24ab6d10fefa85f1f12495cc66ca761eb8 SHA512 d31c2911bb6c5e0ef06d91cc1a13a1f0f5e8a1fab42d4b9a17c1085e36448b420f6dd305221ab3fd34c4246f7f02a1086859564b16c251928a725b72d6cfa94f WHIRLPOOL c4ff792ea5cc118a7470e974a7ba1d6d7fea06f93d8a1f68f663342097234761fadb0b2beaa97d37cd8cef5795745e7ba233194ef29ee3c90fd0fb9cc112fbfc
-EBUILD namd-2.9.ebuild 2704 SHA256 f42b432b080cf538dc1c40387397b260ccddad04d1b569d844d7334de6d54dc2 SHA512 4960b2b26f1009711adadd29c10b5971cbe5a0e0c4861a28a0b14b52dc4704082c8c50f2f32538f7bcbc75cb7736700b0298a1287d21b7a5233707a1e70d17fd WHIRLPOOL 6758fa1ca6f0d707fc5e5a0571a6d9ca3c4bb5af8f32298765cdc05e176a2a0c6ed0e82bd0548ff2d32bdc4b8ac5595ca206c9ac6e5beb82f094254e0d29c6cc
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+EBUILD namd-2.9-r1.ebuild 2633 SHA256 2828b0a1a5bff4a99861de27ceb269590e91f086b8dbc1f421d233e80a17b7f2 SHA512 6778c73f1bee0096a7191df5c911410e940d33720e3f6578e11da47dbd2ff73a827d668058769bb41717168258b889d433277061086d74828e4535461a36151c WHIRLPOOL 4f91aaa609aa9fdcb1a2396bde11fa7f015dd77427f4bccddf53ab3e035222244fdedfedc83eb5c2fb0bcff1d4facfef2d8f48baaa69607ab4a9f8c8880a46a6
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<?xml version="1.0" encoding="UTF-8"?>
<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
- <herd>sci-chemistry</herd>
- <maintainer>
- <email>nicolasbock@gentoo.org</email>
- </maintainer>
+ <herd>sci-chemistry</herd>
+ <maintainer>
+ <email>nicolasbock@gentoo.org</email>
+ </maintainer>
</pkgmetadata>
# Copyright 1999-2015 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/namd/namd-2.10.ebuild,v 1.1 2015/03/07 01:18:22 ottxor Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/namd/namd-2.10.ebuild,v 1.2 2015/03/20 15:28:56 jlec Exp $
EAPI=5
RDEPEND="
>=sys-cluster/charm-6.5.1-r2
sci-libs/fftw:3.0
- dev-lang/tcl"
+ dev-lang/tcl:0="
DEPEND="${RDEPEND}
app-shells/tcsh"
+++ /dev/null
-# Copyright 1999-2012 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/namd/namd-2.7_beta2-r1.ebuild,v 1.2 2012/11/29 13:41:41 jlec Exp $
-
-EAPI=4
-
-inherit eutils multilib toolchain-funcs flag-o-matic
-
-DESCRIPTION="A powerful and highly parallelized molecular dynamics code"
-LICENSE="namd"
-HOMEPAGE="http://www.ks.uiuc.edu/Research/namd/"
-
-MY_PN="NAMD"
-MY_PV="2.7b2"
-
-SRC_URI="${MY_PN}_${MY_PV}_Source.tar.gz"
-
-SLOT="0"
-KEYWORDS="~amd64"
-IUSE=""
-
-RESTRICT="fetch"
-
-DEPEND="
- app-shells/tcsh
- sys-cluster/charm
- sci-libs/fftw:2.1
- dev-lang/tcl"
-
-RDEPEND=${DEPEND}
-
-NAMD_ARCH="Linux-x86_64-g++"
-
-NAMD_DOWNLOAD="http://www.ks.uiuc.edu/Development/Download/download.cgi?PackageName=NAMD"
-
-S="${WORKDIR}/${MY_PN}_${MY_PV}_Source"
-
-pkg_nofetch() {
- echo
- einfo "Please download ${MY_PN}_${MY_PV}_Source.tar.gz from"
- einfo "${NAMD_DOWNLOAD}"
- einfo "after agreeing to the license and then move it to"
- einfo "${DISTDIR}"
- einfo "Be sure to select the ${MY_PV} version!"
- echo
-}
-
-src_prepare() {
- CHARM_VERSION=$(best_version sys-cluster/charm | cut -d- -f3)
-
- # apply a few small fixes to make NAMD compile and
- # link to the proper libraries
- epatch \
- "${FILESDIR}"/namd-2.7_beta2-gentoo.patch \
- "${FILESDIR}"/namd-2.7-ldflags.patch \
- "${FILESDIR}"/namd-2.7-iml-dec.patch
- sed \
- -e "s:charm-6.1.3:charm-${CHARM_VERSION}:" \
- -i Make.charm || die
-
- rm -f charm-6.1.3.tar || die
-
- # proper compiler and cflags
- sed \
- -e "s/g++/$(tc-getCXX)/" \
- -e "s/gcc/$(tc-getCC)/" \
- -e "s/CXXOPTS = -O3 -m64 -fexpensive-optimizations -ffast-math/CXXOPTS = ${CXXFLAGS}/" \
- -e "s/COPTS = -O3 -m64 -fexpensive-optimizations -ffast-math/COPTS = ${CFLAGS}/" \
- -i arch/${NAMD_ARCH}.arch || die
-
- sed \
- -e "s/gentoo-libdir/$(get_libdir)/g" \
- -e "s/gentoo-charm/charm-${CHARM_VERSION}/g" \
- -i Makefile || die "Failed gentooizing Makefile."
- sed -e "s/gentoo-libdir/$(get_libdir)/g" -i arch/Linux-x86_64.fftw || die
- sed -e "s/gentoo-libdir/$(get_libdir)/g" -i arch/Linux-x86_64.tcl || die
-}
-
-src_configure() {
- # configure
- ./config ${NAMD_ARCH} || die
-}
-
-src_compile() {
- # build namd
- cd "${S}/${NAMD_ARCH}"
- emake
-}
-
-src_install() {
- dodoc announce.txt license.txt notes.txt
- cd "${S}/${NAMD_ARCH}"
-
- # the binaries
- dobin ${PN}2 psfgen flipbinpdb flipdcd
-}
-
-pkg_postinst() {
- echo
- einfo "For detailed instructions on how to run and configure"
- einfo "NAMD please consults the extensive documentation at"
- einfo "http://www.ks.uiuc.edu/Research/namd/"
- einfo "and the NAMD tutorials available at"
- einfo "http://www.ks.uiuc.edu/Training/Tutorials/"
- einfo "Have fun :)"
- echo
-}
-# Copyright 1999-2013 Gentoo Foundation
+# Copyright 1999-2015 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/namd/namd-2.9-r1.ebuild,v 1.2 2013/11/30 23:28:19 ottxor Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/namd/namd-2.9-r1.ebuild,v 1.3 2015/03/20 15:28:56 jlec Exp $
EAPI=5
RDEPEND="
>=sys-cluster/charm-6.5.1-r2
sci-libs/fftw:3.0
- dev-lang/tcl"
+ dev-lang/tcl:0="
DEPEND="${RDEPEND}
app-shells/tcsh"
+++ /dev/null
-# Copyright 1999-2013 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/namd/namd-2.9.ebuild,v 1.1 2013/10/18 16:25:04 ottxor Exp $
-
-EAPI=5
-
-inherit eutils multilib toolchain-funcs flag-o-matic
-
-DESCRIPTION="A powerful and highly parallelized molecular dynamics code"
-LICENSE="namd"
-HOMEPAGE="http://www.ks.uiuc.edu/Research/namd/"
-
-MY_PN="NAMD"
-
-SRC_URI="${MY_PN}_${PV}_Source.tar.gz"
-
-SLOT="0"
-KEYWORDS="~amd64"
-IUSE=""
-
-RESTRICT="fetch"
-
-DEPEND="
- app-shells/tcsh
- || ( >=sys-cluster/charm-6.5.1-r2 <=sys-cluster/charm-6.5.1-r1[static-libs] )
- sci-libs/fftw:2.1
- dev-lang/tcl"
-
-RDEPEND=${DEPEND}
-
-NAMD_ARCH="Linux-x86_64-g++"
-
-NAMD_DOWNLOAD="http://www.ks.uiuc.edu/Development/Download/download.cgi?PackageName=NAMD"
-
-S="${WORKDIR}/${MY_PN}_${PV}_Source"
-
-pkg_nofetch() {
- echo
- einfo "Please download ${MY_PN}_${PV}_Source.tar.gz from"
- einfo "${NAMD_DOWNLOAD}"
- einfo "after agreeing to the license and then move it to"
- einfo "${DISTDIR}"
- einfo "Be sure to select the ${PV} version!"
- echo
-}
-
-src_prepare() {
- CHARM_VERSION=$(best_version sys-cluster/charm | cut -d- -f3)
-
- # apply a few small fixes to make NAMD compile and
- # link to the proper libraries
- epatch "${FILESDIR}"/namd-2.9-gentoo.patch
- epatch "${FILESDIR}"/namd-2.7-iml-dec.patch
- sed \
- -e "s:charm-.\+:charm-${CHARM_VERSION}:" \
- -i Make.charm || die
-
- # Remove charm distribution. We don't need it.
- rm -f charm-6.4.0.tar || die
-
- # proper compiler and cflags
- sed \
- -e "s/g++/$(tc-getCXX)/" \
- -e "s/gcc/$(tc-getCC)/" \
- -e "s/CXXOPTS = -O3 -m64 -fexpensive-optimizations -ffast-math/CXXOPTS = ${CXXFLAGS}/" \
- -e "s/COPTS = -O3 -m64 -fexpensive-optimizations -ffast-math/COPTS = ${CFLAGS}/" \
- -i arch/${NAMD_ARCH}.arch || die
-
- sed \
- -e "s/gentoo-libdir/$(get_libdir)/g" \
- -e "s/gentoo-charm/charm-${CHARM_VERSION}/g" \
- -i Makefile || die "Failed gentooizing Makefile."
- sed -e "s/gentoo-libdir/$(get_libdir)/g" -i arch/Linux-x86_64.fftw || die
- sed -e "s/gentoo-libdir/$(get_libdir)/g" -i arch/Linux-x86_64.tcl || die
-}
-
-src_configure() {
- # configure
- ./config ${NAMD_ARCH} --charm-arch . || die
-}
-
-src_compile() {
- # build namd
- cd "${S}/${NAMD_ARCH}"
- emake
-}
-
-src_install() {
- dodoc announce.txt license.txt notes.txt
- cd "${S}/${NAMD_ARCH}"
-
- # the binaries
- dobin ${PN}2 psfgen flipbinpdb flipdcd
-}
-
-pkg_postinst() {
- echo
- einfo "For detailed instructions on how to run and configure"
- einfo "NAMD please consults the extensive documentation at"
- einfo "http://www.ks.uiuc.edu/Research/namd/"
- einfo "and the NAMD tutorials available at"
- einfo "http://www.ks.uiuc.edu/Training/Tutorials/"
- einfo "Have fun :)"
- echo
-}
projects / gentoo.git / commitdiff