Cleaned old

Package-Manager: portage-2.2.0_alpha81/cvs/Linux x86_64

diff --git a/sci-biology/velvet/ChangeLog b/sci-biology/velvet/ChangeLog
index 87b139a7cf8cb059d072a2d2d764c0879386d501..be83cb2ac02860e8806e0ea9e0c5b078b34b394e 100644 (file)
--- a/sci-biology/velvet/ChangeLog
+++ b/sci-biology/velvet/ChangeLog
@@ -1,6 +1,10 @@
 # ChangeLog for sci-biology/velvet
 # Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/velvet/ChangeLog,v 1.18 2011/12/21 09:02:55 phajdan.jr Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/velvet/ChangeLog,v 1.19 2011/12/21 09:14:57 jlec Exp $
+
+  21 Dec 2011; Justin Lecher <jlec@gentoo.org> -velvet-0.7.55.ebuild,
+  -velvet-0.7.62.ebuild:
+  Cleaned old
 
   21 Dec 2011; Pawel Hajdan jr <phajdan.jr@gentoo.org> velvet-1.0.18-r1.ebuild:
   x86 stable wrt bug #393981

diff --git a/sci-biology/velvet/Manifest b/sci-biology/velvet/Manifest
index b01d5d7e4d3cedaaa4cc6706dd761cd25abb4cbf..ae6daae718cfa28a658850bfa0887efd2d1a2626 100644 (file)
--- a/sci-biology/velvet/Manifest
+++ b/sci-biology/velvet/Manifest
@@ -3,18 +3,14 @@ Hash: SHA512
 
 AUX velvet-0.7.62-gentoo.diff 8934 RMD160 4fa5e7bf70c1a9adf5ad5086e856c742e72382d7 SHA1 5dccccb0f6049e0203d4008d5a00e500cf13ef74 SHA256 0c18060bc3283800d44de8895b3417782eca8fb2be4e2256c1a57f43ed628139
 AUX velvet-1.0.18-gentoo-r1.diff 7879 RMD160 03178853bdcccd2c91cd2978bb31d75d67e784ad SHA1 b936840ea0c4e4562c276c8d10edab63267d0ba8 SHA256 5a177e3d0b027069aa44ce97d964ab7f8ab97561f00aa9c4485f110dafb6fa89
-DIST velvet_0.7.55.tgz 3475289 RMD160 f27ee2f74342f09ae1da95cd011da493c3c288c1 SHA1 e4b458b70b1cf64fca09f629a95570bd09c37b0e SHA256 315331f418c2de89c6c871cea3759d947320c0adbc763fea290ec78ece69b614
-DIST velvet_0.7.62.tgz 3506366 RMD160 1e17ebc03dc135532a3eaeb6e68883116970a128 SHA1 9e5df8b4bca97d0989e06001ae93d9d5bda552b0 SHA256 fb5604dd69300fb833ad9227dce9cf38737b8d2f0a3125361eb5edebc6a4f740
 DIST velvet_1.0.18.tgz 7598196 RMD160 970e5c4222dc6a7b13a38db4c00ad300e126a516 SHA1 ce6b19d09924342c2685f8b49dcde205bb0f62a0 SHA256 e6e108ef16f6c5974617b195ce79c7d2860d335a5122418a883217b8cc48473e
-EBUILD velvet-0.7.55.ebuild 1720 RMD160 3fd31e44ffc0d03fbcaa4bcc347cadfb7c27f8ab SHA1 5f15b11e3954ddee5e3aff284cfd33ef84a5620a SHA256 df6d6959b07c3dab7b42756753effa4b85ca789bd6c8fd5d8a07b30700fb342b
-EBUILD velvet-0.7.62.ebuild 1504 RMD160 848be9f30b0ff82dc7b859656d54a0859e6f0690 SHA1 ddce982d92c6053bc97589dd00e0e95620e49613 SHA256 ffb3ae3c0fbd5267cf30d90b0122a1155c78e9b76543cc75d508d4d679c1f1d1
 EBUILD velvet-1.0.18-r1.ebuild 1617 RMD160 7f6595f800f5fb9f3023eed18d0893fd832cece4 SHA1 86387d95eac2bd63dcc8465c5164381c87da34c8 SHA256 4c21b5d9e8b7b87b5e31fc6c794b9e4a5976bdc708597f8754a96cc63f79da16
-MISC ChangeLog 2752 RMD160 7e9734de00e5a70314131e23bffff28e55a715d5 SHA1 1079dd969222e0f6f136581afd0ad9b495233ed0 SHA256 8fa6846d12431601f0c711f35e1e4e9e7f5fc067fed74ea67d05c6918c1b94b3
+MISC ChangeLog 2856 RMD160 49a37d30560e15422457e3c2c72271368c730975 SHA1 eee7216338e516fd997e867731cce076ddd7d2a3 SHA256 8a753a3f00ae026f1fd95281fc107fcf7ac488da66f3052a49bbedc35e71559d
 MISC metadata.xml 259 RMD160 d9d81b67d635fabd81aef8ae0edf971211ae9072 SHA1 8e32f751c67ff891fa35405a2cf6fb33752d6eb1 SHA256 541c3fbcf299d9a8ccf4132ee61f9e53a5d737cefdaa6fdc77764d8d4c7f3110
 -----BEGIN PGP SIGNATURE-----
-Version: GnuPG v2.0.17 (GNU/Linux)
+Version: GnuPG v2.0.18 (GNU/Linux)
 
-iEYEAREKAAYFAk7xoMUACgkQuUQtlDBCeQK41gCcCYVtu02wI1pnnkPw5Z+Ear0g
-Z+YAn1QPOpmw46m2pVlr+b6zASK2oRBY
-=Aif2
+iEYEAREKAAYFAk7xo5cACgkQgAnW8HDreRbGnQCfXSWj6s5H/B9v9Nh3ECN3lwHx
+2m8AoLYm6FU+HbBJtArMAMUy+FtJwzD3
+=fwbF
 -----END PGP SIGNATURE-----

diff --git a/sci-biology/velvet/velvet-0.7.55.ebuild b/sci-biology/velvet/velvet-0.7.55.ebuild
deleted file mode 100644 (file)
index c8db26a..0000000
--- a/sci-biology/velvet/velvet-0.7.55.ebuild
+++ /dev/null
@@ -1,53 +0,0 @@
-# Copyright 1999-2009 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/velvet/velvet-0.7.55.ebuild,v 1.4 2009/10/31 17:57:32 maekke Exp $
-
-EAPI="2"
-
-MY_P="${PN}_${PV}"
-
-DESCRIPTION="A sequence assembler for very short reads"
-HOMEPAGE="http://www.ebi.ac.uk/~zerbino/velvet/"
-SRC_URI="http://www.ebi.ac.uk/~zerbino/velvet/${MY_P}.tgz"
-
-LICENSE="GPL-2"
-SLOT="0"
-IUSE="-doc"
-KEYWORDS="amd64 x86"
-
-DEPEND="doc? ( virtual/latex-base )"
-RDEPEND=""
-
-S="${WORKDIR}/${MY_P}"
-
-src_prepare() {
-       rm -rf "${S}"/third-party/zlib*
-       sed -i -e '/\(CFLAGS\|LDFLAGS\|Z_LIB_DIR\|Z_LIB_FILES\) *= */d' \
-               -e '1 a CFLAGS+= -Wall' -e '1 a LDFLAGS+= -lm -lz' \
-               -e '/default :/ s/zlib//' -e '/color :/ s/zlib//' \
-               "${S}"/Makefile || die
-       use doc || sed -i -e '/default :/ s/doc//' "${S}"/Makefile || die
-       sed -i -e '/zlib.h/d' -e '1 i #include <zlib.h>' "${S}"/src/readSet.c || die
-}
-
-src_compile() {
-       MAKE_XOPTS=""
-       if [[ $VELVET_MAXKMERLENGTH != "" ]]; then MAKE_XOPTS="$MAKE_XOPTS MAXKMERLENGTH=$VELVET_MAXKMERLENGTH"; fi
-       if [[ $VELVET_CATEGORIES != "" ]]; then MAKE_XOPTS="$MAKE_XOPTS CATEGORIES=$VELVET_CATEGORIES"; fi
-       emake -j1 $MAKE_XOPTS || die
-       emake -j1 $MAKE_XOPTS color || die
-}
-
-src_install() {
-       dobin velvet{g,h,g_de,h_de} || die
-       insinto /usr/share/${PN}
-       doins -r contrib || die
-       dodoc Manual.pdf CREDITS.txt
-}
-
-pkg_postinst() {
-       elog "To adjust the MAXKMERLENGTH or CATEGORIES parameters as described in the manual,"
-       elog "please set the variables VELVET_MAXKMERLENGTH or VELVET_CATEGORIES in your"
-       elog "environment or /etc/make.conf, then re-emerge the package. For example:"
-       elog "  VELVET_MAXKMERLENGTH=NN emerge [options] velvet"
-}

diff --git a/sci-biology/velvet/velvet-0.7.62.ebuild b/sci-biology/velvet/velvet-0.7.62.ebuild
deleted file mode 100644 (file)
index e59dadf..0000000
--- a/sci-biology/velvet/velvet-0.7.62.ebuild
+++ /dev/null
@@ -1,51 +0,0 @@
-# Copyright 1999-2010 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/velvet/velvet-0.7.62.ebuild,v 1.2 2010/06/20 18:05:05 xarthisius Exp $
-
-EAPI="2"
-
-inherit eutils toolchain-funcs
-
-MY_P=${PN}_${PV}
-
-DESCRIPTION="A sequence assembler for very short reads"
-HOMEPAGE="http://www.ebi.ac.uk/~zerbino/velvet/"
-SRC_URI="http://www.ebi.ac.uk/~zerbino/velvet/${MY_P}.tgz"
-
-LICENSE="GPL-2"
-SLOT="0"
-IUSE="-doc"
-KEYWORDS="~amd64 ~x86"
-
-DEPEND="doc? ( virtual/latex-base )"
-RDEPEND=""
-
-S=${WORKDIR}/${MY_P}
-
-src_prepare() {
-       epatch "${FILESDIR}"/${P}-gentoo.diff
-       use doc || sed -i -e '/default :/ s/doc//' "${S}"/Makefile || die
-}
-
-src_compile() {
-       tc-export CC
-       MAKE_XOPTS=""
-       if [[ $VELVET_MAXKMERLENGTH != "" ]]; then MAKE_XOPTS="$MAKE_XOPTS MAXKMERLENGTH=$VELVET_MAXKMERLENGTH"; fi
-       if [[ $VELVET_CATEGORIES != "" ]]; then MAKE_XOPTS="$MAKE_XOPTS CATEGORIES=$VELVET_CATEGORIES"; fi
-       emake $MAKE_XOPTS || die
-       emake $MAKE_XOPTS color || die
-}
-
-src_install() {
-       dobin velvet{g,h,g_de,h_de} || die
-       insinto /usr/share/${PN}
-       doins -r contrib || die
-       dodoc Manual.pdf CREDITS.txt ChangeLog || die
-}
-
-pkg_postinst() {
-       elog "To adjust the MAXKMERLENGTH or CATEGORIES parameters as described in the manual,"
-       elog "please set the variables VELVET_MAXKMERLENGTH or VELVET_CATEGORIES in your"
-       elog "environment or /etc/make.conf, then re-emerge the package. For example:"
-       elog "  VELVET_MAXKMERLENGTH=NN emerge [options] velvet"
-}