New package, ebuild written by me

Package-Manager: portage-2.2.0_alpha45/cvs/Linux x86_64

diff --git a/sci-biology/vcftools/ChangeLog b/sci-biology/vcftools/ChangeLog
new file mode 100644 (file)
index 0000000..6f16022
--- /dev/null
+++ b/sci-biology/vcftools/ChangeLog
@@ -0,0 +1,10 @@
+# ChangeLog for sci-biology/vcftools
+# Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/vcftools/ChangeLog,v 1.1 2011/10/02 20:04:57 weaver Exp $
+
+*vcftools-0.1.6 (02 Oct 2011)
+
+  02 Oct 2011; Andrey Kislyuk <weaver@gentoo.org> +vcftools-0.1.6.ebuild,
+  +metadata.xml:
+  New package, ebuild written by me
+

diff --git a/sci-biology/vcftools/Manifest b/sci-biology/vcftools/Manifest
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+++ b/sci-biology/vcftools/Manifest
@@ -0,0 +1,14 @@
+-----BEGIN PGP SIGNED MESSAGE-----
+Hash: SHA1
+
+DIST vcftools_0.1.6.tar.gz 465875 RMD160 bb45afcbfd8f5f95f4b579e0ccb874c1c8408c28 SHA1 1cdd18366e879205f194940a03d3984bb83ece8c SHA256 44a63d3ee089350f66abc3491ec0d18a959e815a816278ea93f2f424b3428077
+EBUILD vcftools-0.1.6.ebuild 774 RMD160 a186e9ec162b439c1f6c7b707eff8fc45638f75e SHA1 c9a120ae9ac3e0ac7bc6ffd22638437ecfab7ef0 SHA256 6fd12d91bc04c505f144d153397abe358f03c0abe1004923e9e4b21662981738
+MISC ChangeLog 372 RMD160 8db397f200b459e87813b5d8b78c67608ed708c2 SHA1 7be03106f3a62c633235fcad323f0af1a66cb19f SHA256 b7bb5aa0bb70a93aa2184943171dd78b4f20a6f3cc35b2a4ec124d7b1fdaa989
+MISC metadata.xml 259 RMD160 d9d81b67d635fabd81aef8ae0edf971211ae9072 SHA1 8e32f751c67ff891fa35405a2cf6fb33752d6eb1 SHA256 541c3fbcf299d9a8ccf4132ee61f9e53a5d737cefdaa6fdc77764d8d4c7f3110
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diff --git a/sci-biology/vcftools/metadata.xml b/sci-biology/vcftools/metadata.xml
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+++ b/sci-biology/vcftools/metadata.xml
@@ -0,0 +1,9 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+       <maintainer>
+               <email>weaver@gentoo.org</email>
+               <name>Andrey Kislyuk</name>
+       </maintainer>
+       <herd>sci-biology</herd>
+</pkgmetadata>

diff --git a/sci-biology/vcftools/vcftools-0.1.6.ebuild b/sci-biology/vcftools/vcftools-0.1.6.ebuild
new file mode 100644 (file)
index 0000000..e8caa0f
--- /dev/null
+++ b/sci-biology/vcftools/vcftools-0.1.6.ebuild
@@ -0,0 +1,32 @@
+# Copyright 1999-2011 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/vcftools/vcftools-0.1.6.ebuild,v 1.1 2011/10/02 20:04:57 weaver Exp $
+
+EAPI=4
+
+MY_P="${PN}_${PV}"
+
+DESCRIPTION="Tools for working with VCF (Variant Call Format) files"
+HOMEPAGE="http://vcftools.sourceforge.net/"
+SRC_URI="mirror://sourceforge/${PN}/${MY_P}.tar.gz"
+
+LICENSE="GPL-3"
+SLOT="0"
+KEYWORDS="~x86 ~amd64"
+IUSE=""
+
+S="${WORKDIR}/${MY_P}"
+
+src_prepare() {
+       sed -i -e "s/CPPFLAGS =/CPPFLAGS = $CXXFLAGS /" \
+               -e "s/LIB =/LIB = $LDFLAGS /" cpp/Makefile || die
+}
+
+src_install(){
+       dobin bin/*
+       insinto /usr/share/${PN}/perl
+       doins perl/*.pm
+       exeinto /usr/share/${PN}/perl
+       doexe perl/{fill,vcf}-*
+       dodoc README.txt
+}