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sci-biology/wgs-assembler: Drop old
authorPacho Ramos <pacho@gentoo.org>
Sun, 15 Jan 2017 11:00:17 +0000 (12:00 +0100)
committerPacho Ramos <pacho@gentoo.org>
Sun, 15 Jan 2017 11:19:45 +0000 (12:19 +0100)
Package-Manager: Portage-2.3.3, Repoman-2.3.1

sci-biology/wgs-assembler/Manifest patch | blob | history
sci-biology/wgs-assembler/wgs-assembler-5.4.ebuild [deleted file] patch | blob | history
sci-biology/wgs-assembler/wgs-assembler-6.1.ebuild [deleted file] patch | blob | history
sci-biology/wgs-assembler/wgs-assembler-7.0.ebuild [deleted file] patch | blob | history

diff --git a/sci-biology/wgs-assembler/Manifest b/sci-biology/wgs-assembler/Manifest
index e71b6d8fd36fd5df83ee43b403f7745ae66df454..dc9eb4bc93e15919fb15b4c2e9d454091901dee7 100644 (file)
--- a/sci-biology/wgs-assembler/Manifest
+++ b/sci-biology/wgs-assembler/Manifest
@@ -1,3 +1 @@
-DIST wgs-5.4.tar.bz2 1876180 SHA256 698b22bd63fa2bb4fe7f164a92c92f82474bc8fc64c37704258ebb3bdc86d7bf SHA512 f0a01453d8fe80e991d3dae530d9cc2d061e3abe8ca1363985ffd91dee86dc65aef56fc31d0cfefc80b97b23377a3786dd54f2f5bf80137e08ba95636f40d538 WHIRLPOOL 9babb299f5820fdf7891f8ea603a8017e1a09df342198ac4d796ed6a9c22721bcb588bcbc46833121ab6fd0b44f5adb0156f66571ca9783c31ab0389b2c34c68
-DIST wgs-6.1.tar.bz2 1900084 SHA256 e00c1b64e857ea01f7e9a9f115dd91e290a380ccda217dd6a386f57754a3cff8 SHA512 3a9cfff43967bf28f557c71b387b3ca8fd56dcdaf15fa0cd1d4b845b7b4d006e8f2692b2097d281925d59bbc41eaac1c789b6993877cffd0e233a5a9050af83c WHIRLPOOL 88e9a3f85ddee01a8a17e989248857bb6483fbde59ce211986f64d8729e82174b6fc04b2f771eb1fc131706a6adb9710c75fb90be3923db8bce6387764e3fa03
 DIST wgs-7.0.tar.bz2 1952253 SHA256 fee425cf2ec6aec6e98d580cc7e43b53eb37abd7ca14e3edc1f953d2c09b3a6c SHA512 e5ef1d4533e3dd17d13c6aca9631f5300768a258f8241f3f7f90de3785bf7a340b6896febe335682c282434c9983bc4a02fe2128a5b0e7ec415dd65e0fe400ba WHIRLPOOL a158b882e51e8ff80fa4e6bcbe4322125fce65fc64900407882a728de9465b778f59cc6d543142ca65a255295e66e89e5303774eeef7a66362c5f492ae99a92b
diff --git a/sci-biology/wgs-assembler/wgs-assembler-5.4.ebuild b/sci-biology/wgs-assembler/wgs-assembler-5.4.ebuild
deleted file mode 100644 (file)
index e0ed230..0000000
--- a/sci-biology/wgs-assembler/wgs-assembler-5.4.ebuild
+++ /dev/null
@@ -1,70 +0,0 @@
-# Copyright 1999-2012 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Id$
-
-EAPI="2"
-
-inherit eutils multilib toolchain-funcs
-
-DESCRIPTION="A de novo whole-genome shotgun DNA sequence assembler, also known as the Celera Assembler and CABOG"
-HOMEPAGE="https://sourceforge.net/projects/wgs-assembler/"
-SRC_URI="mirror://sourceforge/${PN}/wgs-${PV}.tar.bz2"
-
-LICENSE="GPL-2"
-SLOT="0"
-IUSE=""
-KEYWORDS="amd64 x86"
-
-DEPEND="x11-libs/libXt
-       !x11-terms/terminator"
-RDEPEND="${DEPEND}
-       app-shells/tcsh
-       dev-perl/Log-Log4perl"
-
-S="${WORKDIR}/wgs-${PV}"
-
-src_configure() {
-       sed -i -e "s/CC *= *gcc/CC = $(tc-getCC)/" \
-               -e "s/CXX *= *g++/CXX = $(tc-getCXX)/" \
-               "${S}"/src/c_make.as || die
-       sed -i -e "s/CC *:=.*/CC := $(tc-getCC)/" \
-               -e "s/CXX *:=.*/CXX := $(tc-getCXX)/" \
-               "${S}"/kmer/configure.sh || die
-       cd "${S}/kmer"
-       ./configure.sh || die
-}
-
-src_compile() {
-       # not really an install target
-       emake -C kmer -j1 install || die
-       emake -C src -j1 SITE_NAME=LOCAL || die
-}
-
-src_install() {
-       OSTYPE=$(uname)
-       MACHTYPE=$(uname -m)
-       MACHTYPE=${MACHTYPE/x86_64/amd64}
-       MY_S="${OSTYPE}-${MACHTYPE}"
-       sed -i 's|#!/usr/local/bin/|#!/usr/bin/env |' $(find $MY_S -type f) || die
-
-       sed -i '/sub getBinDirectory ()/ a return "/usr/bin";' ${MY_S}/bin/runCA* || die
-       sed -i '/sub getBinDirectoryShellCode ()/ a return "bin=/usr/bin\n";' ${MY_S}/bin/runCA* || die
-       sed -i '1 a use lib "/usr/share/'${PN}'/lib";' $(find $MY_S -name '*.p*') || die
-
-       dobin kmer/${MY_S}/bin/* || die
-       insinto /usr/$(get_libdir)/${PN}
-       doins kmer/${MY_S}/lib/* || die
-       # Collisions
-       # dolib.a kmer/${MY_S}/lib/* || die
-       insinto /usr/include/${PN}
-       doins kmer/${MY_S}/include/*
-
-       insinto /usr/share/${PN}
-       doins -r ${MY_S}/bin/spec
-       insinto /usr/share/${PN}/lib
-       doins -r ${MY_S}/bin/TIGR || die
-       rm -rf ${MY_S}/bin/{TIGR,spec}
-       dobin ${MY_S}/bin/* || die
-       dolib.a ${MY_S}/lib/* || die
-       dodoc README
-}
diff --git a/sci-biology/wgs-assembler/wgs-assembler-6.1.ebuild b/sci-biology/wgs-assembler/wgs-assembler-6.1.ebuild
deleted file mode 100644 (file)
index 0bdd8fc..0000000
--- a/sci-biology/wgs-assembler/wgs-assembler-6.1.ebuild
+++ /dev/null
@@ -1,70 +0,0 @@
-# Copyright 1999-2012 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Id$
-
-EAPI="2"
-
-inherit eutils multilib toolchain-funcs
-
-DESCRIPTION="A de novo whole-genome shotgun DNA sequence assembler, also known as the Celera Assembler and CABOG"
-HOMEPAGE="https://sourceforge.net/projects/wgs-assembler/"
-SRC_URI="mirror://sourceforge/${PN}/wgs-${PV}.tar.bz2"
-
-LICENSE="GPL-2"
-SLOT="0"
-IUSE=""
-KEYWORDS="~amd64 x86"
-
-DEPEND="x11-libs/libXt
-       !x11-terms/terminator"
-RDEPEND="${DEPEND}
-       app-shells/tcsh
-       dev-perl/Log-Log4perl"
-
-S="${WORKDIR}/wgs-${PV}"
-
-src_configure() {
-       sed -i -e "s/CC *= *gcc/CC = $(tc-getCC)/" \
-               -e "s/CXX *= *g++/CXX = $(tc-getCXX)/" \
-               "${S}"/src/c_make.as || die
-       sed -i -e "s/CC *:=.*/CC := $(tc-getCC)/" \
-               -e "s/CXX *:=.*/CXX := $(tc-getCXX)/" \
-               "${S}"/kmer/configure.sh || die
-       cd "${S}/kmer"
-       ./configure.sh || die
-}
-
-src_compile() {
-       # not really an install target
-       emake -C kmer -j1 install || die
-       emake -C src -j1 SITE_NAME=LOCAL || die
-}
-
-src_install() {
-       OSTYPE=$(uname)
-       MACHTYPE=$(uname -m)
-       MACHTYPE=${MACHTYPE/x86_64/amd64}
-       MY_S="${OSTYPE}-${MACHTYPE}"
-       sed -i 's|#!/usr/local/bin/|#!/usr/bin/env |' $(find $MY_S -type f) || die
-
-       sed -i '/sub getBinDirectory ()/ a return "/usr/bin";' ${MY_S}/bin/runCA* || die
-       sed -i '/sub getBinDirectoryShellCode ()/ a return "bin=/usr/bin\n";' ${MY_S}/bin/runCA* || die
-       sed -i '1 a use lib "/usr/share/'${PN}'/lib";' $(find $MY_S -name '*.p*') || die
-
-       dobin kmer/${MY_S}/bin/* || die
-       insinto /usr/$(get_libdir)/${PN}
-       doins kmer/${MY_S}/lib/* || die
-       # Collisions
-       # dolib.a kmer/${MY_S}/lib/* || die
-       insinto /usr/include/${PN}
-       doins kmer/${MY_S}/include/*
-
-       insinto /usr/share/${PN}
-       doins -r ${MY_S}/bin/spec
-       insinto /usr/share/${PN}/lib
-       doins -r ${MY_S}/bin/TIGR || die
-       rm -rf ${MY_S}/bin/{TIGR,spec}
-       dobin ${MY_S}/bin/* || die
-       dolib.a ${MY_S}/lib/* || die
-       dodoc README
-}
diff --git a/sci-biology/wgs-assembler/wgs-assembler-7.0.ebuild b/sci-biology/wgs-assembler/wgs-assembler-7.0.ebuild
deleted file mode 100644 (file)
index f368043..0000000
--- a/sci-biology/wgs-assembler/wgs-assembler-7.0.ebuild
+++ /dev/null
@@ -1,70 +0,0 @@
-# Copyright 1999-2012 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Id$
-
-EAPI="2"
-
-inherit eutils multilib toolchain-funcs
-
-DESCRIPTION="A de novo whole-genome shotgun DNA sequence assembler, also known as the Celera Assembler and CABOG"
-HOMEPAGE="https://sourceforge.net/projects/wgs-assembler/"
-SRC_URI="mirror://sourceforge/${PN}/wgs-${PV}.tar.bz2"
-
-LICENSE="GPL-2"
-SLOT="0"
-IUSE=""
-KEYWORDS="~amd64 ~x86"
-
-DEPEND="x11-libs/libXt
-       !x11-terms/terminator"
-RDEPEND="${DEPEND}
-       app-shells/tcsh
-       dev-perl/Log-Log4perl"
-
-S="${WORKDIR}/wgs-${PV}"
-
-src_configure() {
-       sed -i -e "s/CC *= *gcc/CC = $(tc-getCC)/" \
-               -e "s/CXX *= *g++/CXX = $(tc-getCXX)/" \
-               "${S}"/src/c_make.as || die
-       sed -i -e "s/CC *:=.*/CC := $(tc-getCC)/" \
-               -e "s/CXX *:=.*/CXX := $(tc-getCXX)/" \
-               "${S}"/kmer/configure.sh || die
-       cd "${S}/kmer"
-       ./configure.sh || die
-}
-
-src_compile() {
-       # not really an install target
-       emake -C kmer -j1 install || die
-       emake -C src -j1 SITE_NAME=LOCAL || die
-}
-
-src_install() {
-       OSTYPE=$(uname)
-       MACHTYPE=$(uname -m)
-       MACHTYPE=${MACHTYPE/x86_64/amd64}
-       MY_S="${OSTYPE}-${MACHTYPE}"
-       sed -i 's|#!/usr/local/bin/|#!/usr/bin/env |' $(find $MY_S -type f) || die
-
-       sed -i '/sub getBinDirectory ()/ a return "/usr/bin";' ${MY_S}/bin/runCA* || die
-       sed -i '/sub getBinDirectoryShellCode ()/ a return "bin=/usr/bin\n";' ${MY_S}/bin/runCA* || die
-       sed -i '1 a use lib "/usr/share/'${PN}'/lib";' $(find $MY_S -name '*.p*') || die
-
-       dobin kmer/${MY_S}/bin/* || die
-       insinto /usr/$(get_libdir)/${PN}
-       doins kmer/${MY_S}/lib/* || die
-       # Collisions
-       # dolib.a kmer/${MY_S}/lib/* || die
-       insinto /usr/include/${PN}
-       doins kmer/${MY_S}/include/*
-
-       insinto /usr/share/${PN}
-       doins -r ${MY_S}/bin/spec
-       insinto /usr/share/${PN}/lib
-       doins -r ${MY_S}/bin/TIGR || die
-       rm -rf ${MY_S}/bin/{TIGR,spec}
-       dobin ${MY_S}/bin/* || die
-       dolib.a ${MY_S}/lib/* || die
-       dodoc README
-}
Unnamed repository; edit this file 'description' to name the repository.