dev-perl/Bio-SamTools: Version bump; remove old

Package-Manager: portage-2.2.26

diff --git a/dev-perl/Bio-SamTools/Bio-SamTools-1.390.0-r1.ebuild b/dev-perl/Bio-SamTools/Bio-SamTools-1.420.0.ebuild
similarity index 77%
rename from dev-perl/Bio-SamTools/Bio-SamTools-1.390.0-r1.ebuild
rename to dev-perl/Bio-SamTools/Bio-SamTools-1.420.0.ebuild
index 1ad7fbe64dcbdcf3c9098fd9081033055ffe6cd0..68d73836cb3db0b6577c95d84c170a61aaf40572 100644 (file)
--- a/dev-perl/Bio-SamTools/Bio-SamTools-1.390.0-r1.ebuild
+++ b/dev-perl/Bio-SamTools/Bio-SamTools-1.420.0.ebuild
@@ -2,11 +2,10 @@
 # Distributed under the terms of the GNU General Public License v2
 # $Id$
 
-EAPI=5
-
-MODULE_AUTHOR=LDS
-MODULE_VERSION=1.39
+EAPI=6
 
+DIST_AUTHOR=LDS
+DIST_VERSION=1.42
 inherit perl-module toolchain-funcs
 
 DESCRIPTION="Read SAM/BAM database files"
@@ -14,20 +13,22 @@ DESCRIPTION="Read SAM/BAM database files"
 SLOT="0"
 KEYWORDS="~amd64 ~x86"
 IUSE=""
+LICENSE="|| ( Apache-2.0 Artistic-2 GPL-1+ )"
 
 RDEPEND="
-       sci-biology/bioperl
+       >=sci-biology/bioperl-1.6.9
        >=sci-biology/samtools-1
 "
 DEPEND="${RDEPEND}
        virtual/perl-ExtUtils-CBuilder
-       dev-perl/Module-Build
+       >=dev-perl/Module-Build-0.420.0
 "
 
-SRC_TEST=do
+DIST_TEST=skip
+# cannot load its own library, fundamentally b0rken
 
 PATCHES=(
-       "${FILESDIR}"/${P}-samtools-1.patch
+       "${FILESDIR}"/${PN}-1.390.0-samtools-1.patch
 )
 
 src_prepare() {

diff --git a/dev-perl/Bio-SamTools/Manifest b/dev-perl/Bio-SamTools/Manifest
index bf52deb794541462c59069e1d72162cd1e537024..9143d805af788d33baddeeb7bc7a3b5bf85e329e 100644 (file)
--- a/dev-perl/Bio-SamTools/Manifest
+++ b/dev-perl/Bio-SamTools/Manifest
@@ -1,2 +1,2 @@
-DIST Bio-SamTools-1.39.tar.gz 331515 SHA256 a2baaa0f569c2b49e988978a121fb210fcb35200dcb2f183aa58bb03d711ef4f SHA512 aff502af24239cd64dec3a5a9cb6ab7280661f277cef066f79c87f608112d5870f46ffcc81f3bc2382f48d5247c7ab5de35e4afaa7ca4e286b0323978368d668 WHIRLPOOL db069d76fe386354b8cec60527de6612fc501428e9775e02574955cead3eba55db169697aaacc22c3b4df6475c6ecb72486b94c9b577da1deb42dc5c3791b04f
 DIST Bio-SamTools-1.41.tar.gz 338745 SHA256 b5d7ca16c96cc9fbee5daceb3268f36011740fe4de92074c17a729bac57c3077 SHA512 6f822cd219ecf86e95bc3a6bde1aebbe5eb8284b21b07ca919618c1422c37e6d182285d1a5e77848c6d5cea0dc74a51705f6bc1a27d44aeeaaa69f1cea58f147 WHIRLPOOL b651ea5059ea46ab5e31d237d3e52d7936921470bbd04133be70f935a47b913dc7f3b154c14d1af52f0ba2f5afc6878a27d88e4bbf9d39023cf786bca70f6696
+DIST Bio-SamTools-1.42.tar.gz 337821 SHA256 ef4b736e86442ce61f56ddd94befc302ccc4646cae3c45407e107400c703584c SHA512 6a1f95104ce91a800a314c304915af9d6e1cc477c7d5f42b640d0a27b18cd32c4ad9e261cac5556f4863652570a3c573d34245963fc4b9ade067981b2a329271 WHIRLPOOL 5a216e51173ee5a9a930013718452bcbfbcffe1aa1663f50d567daf17378a50135b1b0b6d750c9aece05de268e730faf6c54963823c037559fb50ed95dda32c7