README.md: Remove nesting shell/exercises/
[swc-modular-shell-genotype.git] / 1000gp.vcf
1 ##fileformat=VCFv4.0
2 ##INFO=<ID=AA,Number=1,Type=String,Description="Ancestral Allele, ftp://ftp.1000genomes.ebi.ac.uk/vol1/ftp/pilot_data/technical/reference/ancestral_alignments/README">
3 ##INFO=<ID=DP,Number=1,Type=Integer,Description="Total Depth">
4 ##INFO=<ID=HM2,Number=0,Type=Flag,Description="HapMap2 membership">
5 ##INFO=<ID=HM3,Number=0,Type=Flag,Description="HapMap3 membership">
6 ##reference=human_b36_both.fasta
7 ##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
8 ##FORMAT=<ID=GQ,Number=1,Type=Integer,Description="Genotype Quality">
9 ##FORMAT=<ID=DP,Number=1,Type=Integer,Description="Read Depth">
10 #CHROM  POS     ID      REF     ALT     QUAL    FILTER  INFO    FORMAT  NA19239 NA19238 NA19240
11 4       21394356        rs4267723       C       T       .       PASS    AA=t;DP=75      GT:GQ:DP        0/1:100:12      0/1:87:17       0/1:100:46
12 6       133067633       rs58462224      A       T       .       PASS    AA=A;DP=69      GT:GQ:DP        0/1:100:14      0/1:41:14       0/1:72:41
13 1       99349778        rs11810975      C       T       .       PASS    AA=T;DP=89;HM2  GT:GQ:DP        0/1:100:14      0/1:50:21       0/1:100:53
14 5       161201745       rs4632839       A       G       .       PASS    AA=A;DP=75      GT:GQ:DP        0/1:100:15      0/1:100:19      0/1:100:42
15 17      43709672        rs12948128      A       G       .       PASS    AA=A;DP=82      GT:GQ:DP        0/1:100:15      0/1:81:21       0/1:100:45
16 21      39726807        rs61342945      A       C       .       PASS    AA=A;DP=93      GT:GQ:DP        0/1:100:16      0/1:31:15       0/1:100:60
17 2       107696624       rs1473289       C       T       .       PASS    AA=C;DP=71      GT:GQ:DP        0/1:100:16      0/1:41:12       0/1:100:29
18 9       88276110        rs1360502       C       T       .       PASS    AA=T;DP=70      GT:GQ:DP        0/1:100:16      0/1:65:12       0/1:100:30
19 14      25996425        rs1113319       C       T       .       PASS    AA=T;DP=81      GT:GQ:DP        0/1:100:16      0/1:77:16       0/1:100:48
20 13      77923788        rs9318552       C       T       .       PASS    AA=c;DP=104     GT:GQ:DP        0/1:100:16      0/1:82:22       0/1:100:66
21 1       73330688        rs10890006      A       T       .       PASS    AA=T;DP=73      GT:GQ:DP        0/1:100:16      0/1:86:14       0/1:100:42
22 5       79997091        rs6151614       C       T       .       PASS    AA=t;DP=104     GT:GQ:DP        0/1:100:16      0/1:90:24       0/1:100:57
23 13      77605002        rs9600974       G       T       .       PASS    AA=G;DP=79      GT:GQ:DP        0/1:100:16      0/1:99:26       0/1:100:28
24 5       28740816        rs11948165      A       T       .       PASS    AA=A;DP=92      GT:GQ:DP        0/1:100:17      0/1:100:24      0/1:100:50
25 3       107675598       rs1955156       C       T       .       PASS    AA=C;DP=83      GT:GQ:DP        0/1:100:17      0/1:100:25      0/1:100:42
26 10      82801531        rs2152630       C       T       .       PASS    AA=C;DP=91      GT:GQ:DP        0/1:100:17      0/1:100:27      0/1:100:47
27 4       84357589        rs28573091      C       T       .       PASS    AA=T;DP=110     GT:GQ:DP        0/1:100:17      0/1:45:18       0/1:100:74
28 1       194922230       rs514756        A       T       .       PASS    AA=A;DP=74      GT:GQ:DP        0/1:100:17      0/1:50:15       0/1:100:41
29 13      100831944       rs61973726      C       T       .       PASS    AA=C;DP=107     GT:GQ:DP        0/1:100:17      0/1:60:16       0/1:100:73
30 6       129407992       rs7771364       A       T       .       PASS    AA=A;DP=78      GT:GQ:DP        0/1:100:17      0/1:67:19       0/1:100:33
31 7       145449767       rs2692362       C       T       .       PASS    AA=T;DP=79      GT:GQ:DP        0/1:100:17      0/1:69:15       0/1:100:45
32 21      27702253        rs239667        C       T       .       PASS    AA=T;DP=97      GT:GQ:DP        0/1:100:17      0/1:86:23       0/1:100:52
33 19      47879681        rs11881844      C       T       .       PASS    AA=c;DP=94      GT:GQ:DP        0/1:100:17      0/1:95:21       0/1:100:56
34 10      52406531        rs7100341       A       G       .       PASS    AA=A;DP=102     GT:GQ:DP        0/1:100:18      0/1:100:16      0/1:100:56
35 6       122612821       rs1456691       A       G       .       PASS    AA=A;DP=97      GT:GQ:DP        0/1:100:18      0/1:100:19      0/1:100:61
36 12      110385211       .       C       G       .       PASS    AA=C;DP=85      GT:GQ:DP        0/1:100:18      0/1:100:22      0/1:100:46
37 7       147567496       rs1534701       A       G       .       PASS    AA=G;DP=111     GT:GQ:DP        0/1:100:18      0/1:100:22      0/1:100:71
38 6       67674067        rs9363666       G       T       .       PASS    AA=T;DP=97      GT:GQ:DP        0/1:100:18      0/1:100:25      0/1:100:53
39 10      19776928        rs3908736       G       T       .       PASS    AA=G;DP=96      GT:GQ:DP        0/1:100:18      0/1:100:26      0/1:100:53
40 7       83613099        rs4461845       A       G       .       PASS    AA=A;DP=104     GT:GQ:DP        0/1:100:18      0/1:100:29      0/1:100:57
41 2       13403782        rs13428666      C       T       .       PASS    AA=T;DP=80      GT:GQ:DP        0/1:100:18      0/1:37:17       0/1:100:35
42 1       85120537        rs4907009       C       G       .       PASS    AA=G;DP=68      GT:GQ:DP        0/1:100:18      0/1:46:14       0/1:100:34
43 14      41926726        rs12432940      G       T       .       PASS    AA=g;DP=93      GT:GQ:DP        0/1:100:18      0/1:63:27       0/1:100:47
44 3       112109163       rs7634941       C       T       .       PASS    AA=C;DP=93      GT:GQ:DP        0/1:100:18      0/1:70:15       0/1:100:57
45 6       32778956        rs9275428       A       G       .       PASS    AA=N;DP=103     GT:GQ:DP        0/1:100:18      0/1:73:16       0/1:100:30
46 11      102407028       rs10895379      C       T       .       PASS    AA=T;DP=70      GT:GQ:DP        0/1:100:18      0/1:75:13       0/1:100:41
47 1       73624340        rs6671002       A       G       .       PASS    AA=A;DP=107;HM2;HM3     GT:GQ:DP        0/1:100:18      0/1:77:21       0/1:100:68
48 5       29445071        rs56051937      C       T       .       PASS    AA=c;DP=87      GT:GQ:DP        0/1:100:18      0/1:84:22       0/1:100:48
49 6       116024647       .       C       T       .       PASS    AA=C;DP=77      GT:GQ:DP        0/1:100:18      0/1:85:20       0/1:100:39
50 11      21632349        rs10766844      A       G       .       PASS    AA=A;DP=87      GT:GQ:DP        0/1:100:18      0/1:96:16       0/1:100:53
51 12      82870032        .       G       T       .       PASS    AA=T;DP=73      GT:GQ:DP        0/1:100:19      0/1:100:18      0/1:100:32
52 10      55562408        rs7914232       C       T       .       PASS    AA=C;DP=124     GT:GQ:DP        0/1:100:19      0/1:100:22      0/1:100:82
53 12      22195163        rs36064966      A       G       .       PASS    AA=A;DP=105     GT:GQ:DP        0/1:100:19      0/1:100:30      0/1:100:53
54 6       31637313        rs2516392       C       G       .       PASS    AA=G;DP=98      GT:GQ:DP        0/1:100:19      0/1:23:22       0/1:100:46
55 12      69895805        rs1705253       A       G       .       PASS    AA=A;DP=109     GT:GQ:DP        0/1:100:19      0/1:33:22       0/1:100:68
56 16      56014199        .       A       G       .       PASS    AA=A;DP=119     GT:GQ:DP        0/1:100:19      0/1:37:24       0/1:100:76
57 21      27022679        .       C       T       .       PASS    AA=T;DP=92      GT:GQ:DP        0/1:100:19      0/1:49:18       0/1:100:56
58 20      53854403        rs6014536       C       T       .       PASS    AA=C;DP=99      GT:GQ:DP        0/1:100:19      0/1:51:16       0/1:100:68
59 2       51864066        rs11563140      A       G       .       PASS    AA=A;DP=113     GT:GQ:DP        0/1:100:19      0/1:57:26       0/1:100:67
60 9       12306502        rs7047049       C       T       .       PASS    AA=T;DP=84      GT:GQ:DP        0/1:100:19      0/1:61:10       0/1:100:54
61 11      27423014        .       A       G       .       PASS    AA=A;DP=94      GT:GQ:DP        0/1:100:19      0/1:64:13       0/1:100:62
62 6       146084962       .       A       T       .       PASS    AA=A;DP=90      GT:GQ:DP        0/1:100:19      0/1:69:15       0/1:100:54
63 8       116089470       .       C       T       .       PASS    AA=C;DP=112     GT:GQ:DP        0/1:100:19      0/1:6:22        0/1:100:72
64 1       196310141       rs16842297      A       G       .       PASS    AA=G;DP=118;HM2;HM3     GT:GQ:DP        0/1:100:19      0/1:73:25       0/1:100:75
65 1       80541067        rs9425219       C       T       .       PASS    AA=T;DP=78      GT:GQ:DP        0/1:100:19      0/1:83:18       0/1:100:40
66 2       227486001       rs10193404      A       G       .       PASS    AA=A;DP=85      GT:GQ:DP        0/1:100:19      0/1:86:21       0/1:100:43
67 5       60674637        rs4484384       A       G       .       PASS    AA=G;DP=83      GT:GQ:DP        0/1:100:19      0/1:87:22       0/1:100:42
68 6       2653428 rs9969099       G       T       .       PASS    AA=G;DP=87      GT:GQ:DP        0/1:100:19      0/1:89:17       0/1:100:51
69 19      20800551        rs669804        A       G       .       PASS    AA=A;DP=84      GT:GQ:DP        0/1:100:19      0/1:91:23       0/1:100:31
70 6       114734411       .       A       G       .       PASS    AA=A;DP=83      GT:GQ:DP        0/1:100:19      0/1:94:16       0/1:100:42
71 11      78273817        rs6592810       C       T       .       PASS    AA=T;DP=109     GT:GQ:DP        0/1:100:19      0/1:98:16       0/1:100:73
72 16      54014247        rs9302666       A       C       .       PASS    AA=C;DP=123     GT:GQ:DP        0/1:100:20      0/1:100:20      0/1:100:39
73 1       148295886       rs6587748       A       G       .       PASS    AA=G;DP=98;HM2  GT:GQ:DP        0/1:100:20      0/1:100:23      0/1:100:54
74 10      85130933        .       A       G       .       PASS    AA=A;DP=95      GT:GQ:DP        0/1:100:20      0/1:100:24      0/1:100:50
75 3       108443371       rs9821094       A       G       .       PASS    AA=A;DP=111     GT:GQ:DP        0/1:100:20      0/1:100:25      0/1:100:60
76 12      80705122        rs2178709       A       T       .       PASS    AA=T;DP=94      GT:GQ:DP        0/1:100:20      0/1:100:26      0/1:100:48
77 6       66131288        rs4394197       C       T       .       PASS    AA=T;DP=108     GT:GQ:DP        0/1:100:20      0/1:100:26      0/1:100:64
78 1       98631113        rs1526297       C       T       .       PASS    AA=T;DP=113;HM2;HM3     GT:GQ:DP        0/1:100:20      0/1:100:27      0/1:100:66
79 5       163549279       rs6871284       C       T       .       PASS    AA=C;DP=123     GT:GQ:DP        0/1:100:20      0/1:100:28      0/1:100:74
80 3       67654730        rs2362880       A       T       .       PASS    AA=T;DP=89      GT:GQ:DP        0/1:100:20      0/1:10:21       0/1:100:39
81 13      20321681        rs59178106      C       T       .       PASS    AA=C;DP=89      GT:GQ:DP        0/1:100:20      0/1:15:8        0/1:100:65
82 7       108137997       rs60694691      A       G       .       PASS    AA=A;DP=88      GT:GQ:DP        0/1:100:20      0/1:28:14       0/1:100:55
83 11      16936364        rs11024091      C       T       .       PASS    AA=C;DP=71      GT:GQ:DP        0/1:100:20      0/1:34:11       0/1:100:42
84 4       56092242        rs7692737       A       T       .       PASS    AA=A;DP=111     GT:GQ:DP        0/1:100:20      0/1:34:20       0/1:100:73
85 10      133258543       rs7099190       C       T       .       PASS    AA=C;DP=103     GT:GQ:DP        0/1:100:20      0/1:36:17       0/1:100:61
86 13      48573699        rs9568151       C       T       .       PASS    AA=C;DP=97      GT:GQ:DP        0/1:100:20      0/1:42:22       0/1:100:54
87 11      28848132        rs7938868       C       T       .       PASS    AA=C;DP=101     GT:GQ:DP        0/1:100:20      0/1:50:18       0/1:100:61
88 13      91681840        rs16947150      C       T       .       PASS    AA=C;DP=66      GT:GQ:DP        0/1:100:20      0/1:52:9        0/1:100:37
89 12      10773616        rs797168        A       G       .       PASS    AA=A;DP=104     GT:GQ:DP        0/1:100:20      0/1:60:15       0/1:100:69
90 18      48211253        rs2339345       A       C       .       PASS    AA=A;DP=96      GT:GQ:DP        0/1:100:20      0/1:62:14       0/1:100:63
91 13      92712064        rs16948547      A       G       .       PASS    AA=a;DP=87      GT:GQ:DP        0/1:100:20      0/1:62:15       0/1:100:54
92 4       82927964        rs12331435      C       T       .       PASS    AA=C;DP=81      GT:GQ:DP        0/1:100:20      0/1:69:10       0/1:100:50
93 2       29572861        rs4666230       A       G       .       PASS    AA=A;DP=129     GT:GQ:DP        0/1:100:20      0/1:72:18       0/1:100:92
94 18      31200883        rs9964790       C       T       .       PASS    AA=c;DP=94      GT:GQ:DP        0/1:100:20      0/1:73:13       0/1:100:61
95 5       114641946       rs267297        A       G       .       PASS    AA=A;DP=94      GT:GQ:DP        0/1:100:20      0/1:76:22       0/1:100:52
96 3       163230157       rs7632987       A       G       .       PASS    AA=A;DP=89      GT:GQ:DP        0/1:100:20      0/1:79:20       0/1:100:50
97 20      59855625        rs6142875       C       T       .       PASS    AA=C;DP=111     GT:GQ:DP        0/1:100:20      0/1:82:16       0/1:100:73
98 10      2371544 rs7100862       C       T       .       PASS    AA=T;DP=86      GT:GQ:DP        0/1:100:20      0/1:86:22       0/1:100:45
99 4       139657603       rs299122        A       G       .       PASS    AA=A;DP=108     GT:GQ:DP        0/1:100:20      0/1:92:21       0/1:100:68
100 19      34204167        rs3960958       C       T       .       PASS    AA=C;DP=82      GT:GQ:DP        0/1:100:20      0/1:94:15       0/1:100:33
101 13      69953980        rs1930888       A       G       .       PASS    AA=a;DP=122     GT:GQ:DP        0/1:100:20      0/1:97:22       0/1:100:77
102 10      8912791 .       A       G       .       PASS    AA=A;DP=92      GT:GQ:DP        0/1:100:21      0/1:100:17      0/1:100:52
103 17      35230125        rs9904277       C       T       .       PASS    AA=T;DP=89      GT:GQ:DP        0/1:100:21      0/1:100:18      0/1:100:40
104 5       86919892        rs1596091       A       G       .       PASS    AA=A;DP=94      GT:GQ:DP        0/1:100:21      0/1:100:18      0/1:100:53
105 7       79535684        rs4727999       A       G       .       PASS    AA=A;DP=85      GT:GQ:DP        0/1:100:21      0/1:100:19      0/1:100:44
106 15      84954786        rs2447265       A       G       .       PASS    AA=A;DP=114     GT:GQ:DP        0/1:100:21      0/1:100:20      0/1:100:74
107 16      79455168        rs9938773       A       C       .       PASS    AA=A;DP=93      GT:GQ:DP        0/1:100:21      0/1:100:21      0/1:100:50
108 6       159908738       rs9456423       G       T       .       PASS    AA=g;DP=99      GT:GQ:DP        0/1:100:21      0/1:100:24      0/1:100:53
109 10      121270209       rs10886506      A       G       .       PASS    AA=G;DP=100     GT:GQ:DP        0/1:100:21      0/1:100:24      0/1:100:57
110 9       103716687       rs12379524      A       T       .       PASS    AA=A;DP=87      GT:GQ:DP        0/1:100:21      0/1:100:25      0/1:100:31
111 2       166604007       rs1019723       A       G       .       PASS    AA=G;DP=94      GT:GQ:DP        0/1:100:21      0/1:100:25      0/1:100:48
112 13      63107766        rs17088637      G       T       .       PASS    AA=G;DP=99      GT:GQ:DP        0/1:100:21      0/1:100:25      0/1:100:54
113 7       77817064        rs6976483       C       T       .       PASS    AA=C;DP=116     GT:GQ:DP        0/1:100:21      0/1:100:25      0/1:100:71
114 1       80484236        rs1832964       A       G       .       PASS    AA=G;DP=120;HM2;HM3     GT:GQ:DP        0/1:100:21      0/1:100:26      0/1:100:32
115 8       82580767        rs11988392      A       G       .       PASS    AA=G;DP=118     GT:GQ:DP        0/1:100:21      0/1:100:26      0/1:100:71
116 14      54416123        rs61702394      A       G       .       PASS    AA=G;DP=110     GT:GQ:DP        0/1:100:21      0/1:100:28      0/1:100:61
117 12      96738707        rs11109232      A       G       .       PASS    AA=G;DP=105     GT:GQ:DP        0/1:100:21      0/1:100:34      0/1:100:49
118 2       117966732       rs6748732       A       G       .       PASS    AA=G;DP=143     GT:GQ:DP        0/1:100:21      0/1:100:42      0/1:100:32
119 14      26418127        rs8014093       C       T       .       PASS    AA=C;DP=97      GT:GQ:DP        0/1:100:21      0/1:18:19       0/1:100:60
120 15      85966008        rs4887315       A       G       .       PASS    AA=A;DP=94      GT:GQ:DP        0/1:100:21      0/1:28:19       0/1:100:56
121 4       99639067        rs6532739       C       G       .       PASS    AA=G;DP=100     GT:GQ:DP        0/1:100:21      0/1:44:18       0/1:100:60
122 21      26264863        rs128648        C       T       .       PASS    AA=T;DP=126     GT:GQ:DP        0/1:100:21      0/1:48:23       0/1:100:43
123 4       91958001        rs17017683      C       T       .       PASS    AA=T;DP=97      GT:GQ:DP        0/1:100:21      0/1:60:22       0/1:100:54
124 1       79812456        rs12142797      G       T       .       PASS    AA=T;DP=80      GT:GQ:DP        0/1:100:21      0/1:64:13       0/1:100:46
125 3       75683915        .       G       T       .       PASS    AA=.;DP=99      GT:GQ:DP        0/1:100:21      0/1:65:21       0/1:100:58
126 3       107514720       rs9847622       C       T       .       PASS    AA=T;DP=92      GT:GQ:DP        0/1:100:21      0/1:70:12       0/1:100:59
127 13      60730184        .       C       T       .       PASS    AA=C;DP=81      GT:GQ:DP        0/1:100:21      0/1:77:22       0/1:100:38
128 2       109305856       rs10198683      C       T       .       PASS    AA=C;DP=116     GT:GQ:DP        0/1:100:21      0/1:79:23       0/1:100:74
129 4       20251562        rs1457913       A       T       .       PASS    AA=A;DP=105     GT:GQ:DP        0/1:100:21      0/1:7:16        0/1:100:63
130 9       2821149 rs2292000       A       C       .       PASS    AA=C;DP=98      GT:GQ:DP        0/1:100:21      0/1:85:27       0/1:100:52
131 14      91316377        rs17127555      A       T       .       PASS    AA=A;DP=91      GT:GQ:DP        0/1:100:21      0/1:90:21       0/1:100:47
132 1       218801372       rs12057177      A       G       .       PASS    AA=A;DP=118     GT:GQ:DP        0/1:100:21      0/1:90:24       0/1:100:75
133 14      105943519       rs10145675      C       T       .       PASS    AA=c;DP=126     GT:GQ:DP        0/1:100:21      0/1:91:16       0/1:100:46
134 4       96946320        rs4699462       C       T       .       PASS    AA=T;DP=81      GT:GQ:DP        0/1:100:21      0/1:92:22       0/1:100:26
135 1       119474616       rs2498500       C       T       .       PASS    AA=C;DP=110;HM2;HM3     GT:GQ:DP        0/1:100:21      0/1:94:23       0/1:100:65
136 2       149239319       rs16829245      G       T       .       PASS    AA=T;DP=104     GT:GQ:DP        0/1:100:21      0/1:9:15        0/1:100:66
137 8       140786504       rs61490943      A       G       .       PASS    AA=G;DP=66      GT:GQ:DP        0/1:100:21      0/1:9:7 0/1:47:26
138 6       76443194        rs17792285      A       G       .       PASS    AA=A;DP=102     GT:GQ:DP        0/1:100:22      0/1:100:16      0/1:100:64
139 2       154729953       .       A       G       .       PASS    AA=A;DP=78      GT:GQ:DP        0/1:100:22      0/1:100:18      0/1:100:38
140 2       46891870        rs2121320       A       G       .       PASS    AA=A;DP=100     GT:GQ:DP        0/1:100:22      0/1:100:18      0/1:100:62
141 9       136876550       rs4428739       C       T       .       PASS    AA=C;DP=98      GT:GQ:DP        0/1:100:22      0/1:100:20      0/1:100:55
142 10      93212003        rs9664423       A       G       .       PASS    AA=A;DP=99      GT:GQ:DP        0/1:100:22      0/1:100:21      0/1:100:43
143 8       24891498        rs7000122       A       G       .       PASS    AA=A;DP=92      GT:GQ:DP        0/1:100:22      0/1:100:21      0/1:100:49
144 5       24648167        rs1468020       A       T       .       PASS    AA=A;DP=100     GT:GQ:DP        0/1:100:22      0/1:100:23      0/1:100:57
145 7       120418598       rs2721359       C       T       .       PASS    AA=C;DP=99      GT:GQ:DP        0/1:100:22      0/1:100:24      0/1:100:51
146 11      132295158       rs7937764       A       T       .       PASS    AA=T;DP=102     GT:GQ:DP        0/1:100:22      0/1:100:24      0/1:100:57
147 2       39849412        rs13400213      A       G       .       PASS    AA=A;DP=108     GT:GQ:DP        0/1:100:22      0/1:100:24      0/1:100:60
148 3       12503583        rs1699362       A       G       .       PASS    AA=A;DP=119     GT:GQ:DP        0/1:100:22      0/1:100:24      0/1:100:73
149 18      51803985        rs2646947       A       T       .       PASS    AA=T;DP=111     GT:GQ:DP        0/1:100:22      0/1:100:25      0/1:100:65
150 14      33470694        rs1680702       A       G       .       PASS    AA=A;DP=133     GT:GQ:DP        0/1:100:22      0/1:100:27      0/1:100:84
151 13      23997626        rs7325412       A       G       .       PASS    AA=N;DP=95      GT:GQ:DP        0/1:100:22      0/1:100:29      0/1:100:44
152 2       66408350        rs2971827       C       T       .       PASS    AA=T;DP=93      GT:GQ:DP        0/1:100:22      0/1:18:10       0/1:100:62
153 12      129180649       rs6486522       C       G       .       PASS    AA=G;DP=114     GT:GQ:DP        0/1:100:22      0/1:23:24       0/1:100:69
154 2       67383937        rs10199961      A       C       .       PASS    AA=A;DP=98      GT:GQ:DP        0/1:100:22      0/1:25:16       0/1:100:59
155 10      126284470       rs12777136      C       T       .       PASS    AA=C;DP=85      GT:GQ:DP        0/1:100:22      0/1:35:10       0/1:100:41
156 16      79531035        rs9933697       A       G       .       PASS    AA=G;DP=101     GT:GQ:DP        0/1:100:22      0/1:50:15       0/1:100:64
157 8       559870  rs7818044       A       G       .       PASS    AA=A;DP=79      GT:GQ:DP        0/1:100:22      0/1:55:17       0/1:100:40
158 6       163669363       .       G       T       .       PASS    AA=G;DP=105     GT:GQ:DP        0/1:100:22      0/1:59:20       0/1:100:61
159 21      30317126        rs396485        C       T       .       PASS    AA=T;DP=90      GT:GQ:DP        0/1:100:22      0/1:67:17       0/1:100:52
160 4       117743129       .       G       T       .       PASS    AA=G;DP=116     GT:GQ:DP        0/1:100:22      0/1:71:22       0/1:100:63
161 5       65533309        rs253212        C       T       .       PASS    AA=T;DP=117     GT:GQ:DP        0/1:100:22      0/1:71:25       0/1:100:68
162 3       166880687       .       A       G       .       PASS    AA=A;DP=107     GT:GQ:DP        0/1:100:22      0/1:71:27       0/1:100:57
163 4       78443882        rs28507973      C       T       .       PASS    AA=t;DP=82      GT:GQ:DP        0/1:100:22      0/1:72:18       0/1:100:43
164 1       118699449       rs58937007      C       T       .       PASS    AA=C;DP=92      GT:GQ:DP        0/1:100:22      0/1:77:24       0/1:100:43
165 9       89048217        rs10123032      A       T       .       PASS    AA=T;DP=96      GT:GQ:DP        0/1:100:22      0/1:79:20       0/1:100:52
166 13      87907804        rs432394        C       T       .       PASS    AA=C;DP=95      GT:GQ:DP        0/1:100:22      0/1:83:17       0/1:100:37
167 21      36972413        rs2835434       A       C       .       PASS    AA=A;DP=122     GT:GQ:DP        0/1:100:22      0/1:86:19       0/1:100:79
168 4       97941603        rs12649421      A       G       .       PASS    AA=A;DP=121     GT:GQ:DP        0/1:100:22      0/1:8:20        0/1:100:79
169 4       136430633       rs28406493      A       G       .       PASS    AA=A;DP=85      GT:GQ:DP        0/1:100:22      0/1:90:18       0/1:100:46
170 7       90321339        rs57870103      C       G       .       PASS    AA=C;DP=138     GT:GQ:DP        0/1:100:22      0/1:90:25       0/1:100:92
171 6       102855549       rs9322645       A       G       .       PASS    AA=G;DP=116     GT:GQ:DP        0/1:100:22      0/1:98:25       0/1:100:69
172 7       5729445 .       C       T       .       PASS    AA=C;DP=113     GT:GQ:DP        0/1:100:23      0/1:100:16      0/1:100:73
173 17      56997961        .       A       T       .       PASS    AA=a;DP=63      GT:GQ:DP        0/1:100:23      0/1:100:17      0/1:100:22
174 13      66745642        rs1033941       C       T       .       PASS    AA=T;DP=86      GT:GQ:DP        0/1:100:23      0/1:100:17      0/1:100:44
175 7       136857464       rs2293548       A       G       .       PASS    AA=G;DP=89      GT:GQ:DP        0/1:100:23      0/1:100:17      0/1:100:48
176 2       49301937        rs4396759       A       G       .       PASS    AA=A;DP=81      GT:GQ:DP        0/1:100:23      0/1:100:19      0/1:100:38
177 4       113010003       rs10025409      A       G       .       PASS    AA=G;DP=126     GT:GQ:DP        0/1:100:23      0/1:100:21      0/1:100:78
178 1       208747653       rs12122881      C       G       .       PASS    AA=G;DP=117;HM2 GT:GQ:DP        0/1:100:23      0/1:100:23      0/1:100:74
179 2       233846979       rs2289472       C       T       .       PASS    AA=C;DP=136     GT:GQ:DP        0/1:100:23      0/1:100:25      0/1:100:46
180 9       29604347        .       A       G       .       PASS    AA=A;DP=113     GT:GQ:DP        0/1:100:23      0/1:100:25      0/1:100:62
181 11      92212588        rs7104420       A       G       .       PASS    AA=G;DP=130     GT:GQ:DP        0/1:100:23      0/1:100:25      0/1:100:83
182 8       57975972        rs12676415      A       G       .       PASS    AA=A;DP=101     GT:GQ:DP        0/1:100:23      0/1:100:26      0/1:100:53
183 17      47003844        rs16950104      A       T       .       PASS    AA=A;DP=144     GT:GQ:DP        0/1:100:23      0/1:100:29      0/1:100:48
184 14      84934104        rs7158945       C       G       .       PASS    AA=C;DP=121     GT:GQ:DP        0/1:100:23      0/1:100:31      0/1:100:69
185 8       76383074        rs2048445       A       T       .       PASS    AA=A;DP=144     GT:GQ:DP        0/1:100:23      0/1:100:34      0/1:100:92
186 12      53879339        rs61956000      A       C       .       PASS    AA=a;DP=140     GT:GQ:DP        0/1:100:23      0/1:100:35      0/1:100:39
187 8       91924065        rs1463920       C       T       .       PASS    AA=C;DP=152     GT:GQ:DP        0/1:100:23      0/1:100:39      0/1:100:90
188 4       3570401 .       C       T       .       PASS    AA=-;DP=110     GT:GQ:DP        0/1:100:23      0/1:31:21       0/1:100:56
189 14      47964731        .       C       T       .       PASS    AA=C;DP=99      GT:GQ:DP        0/1:100:23      0/1:36:22       0/1:100:53
190 9       117651259       rs10116601      C       T       .       PASS    AA=C;DP=110     GT:GQ:DP        0/1:100:23      0/1:37:16       0/1:100:75
191 1       64795883        rs10749747      C       T       .       PASS    AA=T;DP=113;HM2 GT:GQ:DP        0/1:100:23      0/1:46:15       0/1:100:35
192 2       233515405       .       C       G       .       PASS    AA=C;DP=92      GT:GQ:DP        0/1:100:23      0/1:55:16       0/1:100:46
193 2       34854176        rs10207883      C       T       .       PASS    AA=C;DP=93      GT:GQ:DP        0/1:100:23      0/1:59:19       0/1:100:50
194 10      99767249        rs7082433       C       T       .       PASS    AA=C;DP=132     GT:GQ:DP        0/1:100:23      0/1:61:13       0/1:100:45
195 6       75032898        rs9341459       A       G       .       PASS    AA=G;DP=101     GT:GQ:DP        0/1:100:23      0/1:63:19       0/1:100:56
196 5       88784524        rs1528589       C       T       .       PASS    AA=c;DP=90      GT:GQ:DP        0/1:100:23      0/1:65:18       0/1:100:50
197 19      33780434        .       C       T       .       PASS    AA=C;DP=89      GT:GQ:DP        0/1:100:23      0/1:66:16       0/1:100:50
198 18      13000238        rs58871601      C       G       .       PASS    AA=C;DP=81      GT:GQ:DP        0/1:100:23      0/1:70:11       0/1:100:46
199 11      99091924        rs610132        A       T       .       PASS    AA=T;DP=75      GT:GQ:DP        0/1:100:23      0/1:71:18       0/1:100:24
200 12      27298842        rs744469        A       T       .       PASS    AA=A;DP=123     GT:GQ:DP        0/1:100:23      0/1:72:16       0/1:100:83
201 10      64041798        .       C       T       .       PASS    AA=C;DP=126     GT:GQ:DP        0/1:100:23      0/1:72:22       0/1:100:83
202 4       138824178       rs2462871       A       C       .       PASS    AA=A;DP=103     GT:GQ:DP        0/1:100:23      0/1:73:21       0/1:100:55
203 10      62410756        rs11594559      C       T       .       PASS    AA=C;DP=100     GT:GQ:DP        0/1:100:23      0/1:76:19       0/1:100:55
204 4       24291332        rs12640646      A       G       .       PASS    AA=A;DP=125     GT:GQ:DP        0/1:100:23      0/1:79:21       0/1:100:84
205 6       112561920       rs13191507      A       G       .       PASS    AA=A;DP=104     GT:GQ:DP        0/1:100:23      0/1:79:22       0/1:100:58
206 2       4923567 rs13024694      A       T       .       PASS    AA=T;DP=102     GT:GQ:DP        0/1:100:23      0/1:81:20       0/1:100:62
207 11      20470864        rs10833336      C       G       .       PASS    AA=C;DP=107     GT:GQ:DP        0/1:100:23      0/1:81:28       0/1:100:56
208 11      35657812        rs7928794       A       C       .       PASS    AA=A;DP=124     GT:GQ:DP        0/1:100:23      0/1:82:18       0/1:100:65
209 8       34834353        rs7000035       A       T       .       PASS    AA=T;DP=118     GT:GQ:DP        0/1:100:23      0/1:83:27       0/1:100:69
210 1       216796762       rs12022512      C       T       .       PASS    AA=c;DP=112;HM2 GT:GQ:DP        0/1:100:23      0/1:86:15       0/1:100:37
211 7       150917485       rs4726057       C       T       .       PASS    AA=c;DP=106     GT:GQ:DP        0/1:100:23      0/1:90:21       0/1:100:63
212 2       70430501        rs1478644       A       G       .       PASS    AA=A;DP=74      GT:GQ:DP        0/1:100:23      0/1:91:15       0/1:100:29
213 13      65279006        rs17070530      G       T       .       PASS    AA=G;DP=98      GT:GQ:DP        0/1:100:23      0/1:91:20       0/1:100:59
214 5       15124664        .       C       T       .       PASS    AA=C;DP=112     GT:GQ:DP        0/1:100:23      0/1:92:23       0/1:100:64
215 6       76737141        rs6910325       A       G       .       PASS    AA=G;DP=96      GT:GQ:DP        0/1:100:23      0/1:94:17       0/1:100:57
216 21      46759700        .       A       G       .       PASS    AA=G;DP=136     GT:GQ:DP        0/1:100:23      0/1:97:20       0/1:100:98
217 4       117250893       rs28863548      C       T       .       PASS    AA=C;DP=96      GT:GQ:DP        0/1:100:23      0/1:98:21       0/1:100:52
218 6       127938760       rs59033084      C       T       .       PASS    AA=C;DP=78      GT:GQ:DP        0/1:100:24      0/1:100:17      0/1:100:37
219 16      82254401        .       C       G       .       PASS    AA=C;DP=99      GT:GQ:DP        0/1:100:24      0/1:100:19      0/1:100:59
220 4       21165604        rs11943551      G       T       .       PASS    AA=G;DP=110     GT:GQ:DP        0/1:100:24      0/1:100:20      0/1:100:65
221 11      32823976        rs11820154      A       T       .       PASS    AA=T;DP=75      GT:GQ:DP        0/1:100:24      0/1:100:21      0/1:100:29
222 7       95466280        .       C       T       .       PASS    AA=C;DP=104     GT:GQ:DP        0/1:100:24      0/1:100:21      0/1:100:54
223 14      92687255        rs8005924       A       G       .       PASS    AA=a;DP=104     GT:GQ:DP        0/1:100:24      0/1:100:21      0/1:100:57
224 18      36929989        rs17689207      G       T       .       PASS    AA=G;DP=124     GT:GQ:DP        0/1:100:24      0/1:100:21      0/1:100:75
225 14      53476138        rs2181735       A       T       .       PASS    AA=A;DP=109     GT:GQ:DP        0/1:100:24      0/1:100:22      0/1:100:66
226 12      47202410        rs12579169      A       G       .       PASS    AA=a;DP=101     GT:GQ:DP        0/1:100:24      0/1:100:23      0/1:100:54
227 15      94075474        rs12324270      A       C       .       PASS    AA=A;DP=100     GT:GQ:DP        0/1:100:24      0/1:100:23      0/1:100:55
228 1       246180180       rs10788739      G       T       .       PASS    AA=g;DP=124     GT:GQ:DP        0/1:100:24      0/1:100:23      0/1:100:76
229 6       114880600       rs1008682       C       T       .       PASS    AA=C;DP=142     GT:GQ:DP        0/1:100:24      0/1:100:25      0/1:100:48
230 12      57051773        rs61922288      A       G       .       PASS    AA=A;DP=122     GT:GQ:DP        0/1:100:24      0/1:100:25      0/1:100:76
231 8       34053291        rs10216404      A       T       .       PASS    AA=T;DP=125     GT:GQ:DP        0/1:100:24      0/1:100:28      0/1:100:32
232 4       89056729        rs4693909       C       T       .       PASS    AA=C;DP=101     GT:GQ:DP        0/1:100:24      0/1:100:28      0/1:100:48
233 3       173254448       rs11718418      A       G       .       PASS    AA=G;DP=116     GT:GQ:DP        0/1:100:24      0/1:100:28      0/1:100:64
234 4       124848265       rs17810799      A       G       .       PASS    AA=A;DP=129     GT:GQ:DP        0/1:100:24      0/1:100:28      0/1:100:77
235 3       65778348        rs12629744      A       C       .       PASS    AA=A;DP=119     GT:GQ:DP        0/1:100:24      0/1:100:32      0/1:100:62
236 8       1948150 rs34515943      A       C       .       PASS    AA=A;DP=140     GT:GQ:DP        0/1:100:24      0/1:100:33      0/1:100:81
237 5       4586554 rs7734974       C       T       .       PASS    AA=C;DP=143     GT:GQ:DP        0/1:100:24      0/1:100:34      0/1:100:83
238 10      96057937        rs10509670      A       G       .       PASS    AA=a;DP=129     GT:GQ:DP        0/1:100:24      0/1:100:36      0/1:100:73
239 1       190243273       .       A       C       .       PASS    AA=a;DP=122     GT:GQ:DP        0/1:100:24      0/1:100:40      0/1:100:60
240 15      84558024        rs7171491       A       C       .       PASS    AA=C;DP=87      GT:GQ:DP        0/1:100:24      0/1:10:17       0/1:100:46
241 21      36243857        .       A       G       .       PASS    AA=A;DP=93      GT:GQ:DP        0/1:100:24      0/1:11:29       0/1:91:29
242 7       75184080        rs2868138       A       G       .       PASS    AA=T;DP=78      GT:GQ:DP        0/1:100:24      0/1:14:9        0/1:100:44
243 4       161694629       rs1542045       G       T       .       PASS    AA=G;DP=92      GT:GQ:DP        0/1:100:24      0/1:38:13       0/1:100:43
244 22      36358888        rs11913963      C       T       .       PASS    AA=c;DP=107     GT:GQ:DP        0/1:100:24      0/1:39:16       0/1:100:59
245 4       104781208       rs6831831       C       T       .       PASS    AA=C;DP=90      GT:GQ:DP        0/1:100:24      0/1:39:17       0/1:100:51
246 5       109880405       .       A       T       .       PASS    AA=A;DP=82      GT:GQ:DP        0/1:100:24      0/1:43:12       0/1:100:29
247 6       70101744        .       A       T       .       PASS    AA=A;DP=80      GT:GQ:DP        0/1:100:24      0/1:45:26       0/1:100:23
248 15      85646812        rs11638190      A       G       .       PASS    AA=G;DP=119     GT:GQ:DP        0/1:100:24      0/1:49:19       0/1:100:76
249 11      132491388       rs7119176       C       T       .       PASS    AA=T;DP=116     GT:GQ:DP        0/1:100:24      0/1:50:17       0/1:100:73
250 11      71834974        .       A       G       .       PASS    AA=A;DP=80      GT:GQ:DP        0/1:100:24      0/1:50:19       0/1:100:38
251 6       38486059        rs60405483      C       T       .       PASS    AA=C;DP=94      GT:GQ:DP        0/1:100:24      0/1:51:15       0/1:100:55
252 2       67900190        .       A       T       .       PASS    AA=A;DP=95      GT:GQ:DP        0/1:100:24      0/1:55:13       0/1:100:61
253 1       61946128        rs17122688      C       T       .       PASS    AA=C;DP=95;HM2  GT:GQ:DP        0/1:100:24      0/1:58:17       0/1:100:55
254 15      94993737        .       G       T       .       PASS    AA=G;DP=115     GT:GQ:DP        0/1:100:24      0/1:58:27       0/1:100:66
255 7       152340373       rs10952384      A       G       .       PASS    AA=A;DP=85      GT:GQ:DP        0/1:100:24      0/1:59:20       0/1:100:31
256 10      71276482        rs12146341      C       G       .       PASS    AA=G;DP=108     GT:GQ:DP        0/1:100:24      0/1:61:22       0/1:100:58
257 6       145906869       rs110289        C       G       .       PASS    AA=G;DP=105     GT:GQ:DP        0/1:100:24      0/1:61:26       0/1:100:55
258 6       92897095        rs3924791       A       G       .       PASS    AA=A;DP=111     GT:GQ:DP        0/1:100:24      0/1:62:26       0/1:100:61
259 20      59443243        rs6089615       C       T       .       PASS    AA=c;DP=80      GT:GQ:DP        0/1:100:24      0/1:66:12       0/1:100:32
260 5       19195043        rs7731105       C       T       .       PASS    AA=T;DP=80      GT:GQ:DP        0/1:100:24      0/1:69:17       0/1:100:30
261 4       91808618        rs17182666      C       T       .       PASS    AA=T;DP=109     GT:GQ:DP        0/1:100:24      0/1:71:22       0/1:100:50
262 2       115986151       rs969255        A       C       .       PASS    AA=C;DP=124     GT:GQ:DP        0/1:100:24      0/1:73:23       0/1:100:78
263 4       116090480       rs998359        C       T       .       PASS    AA=T;DP=118     GT:GQ:DP        0/1:100:24      0/1:78:22       0/1:100:74
264 2       13154706        rs16859760      A       G       .       PASS    AA=A;DP=112     GT:GQ:DP        0/1:100:24      0/1:80:19       0/1:100:71
265 5       59774943        rs446883        C       T       .       PASS    AA=T;DP=95      GT:GQ:DP        0/1:100:24      0/1:81:23       0/1:100:45
266 4       178378609       rs1371230       G       T       .       PASS    AA=G;DP=102     GT:GQ:DP        0/1:100:24      0/1:88:18       0/1:100:60
267 2       17409583        rs12710643      A       G       .       PASS    AA=A;DP=112     GT:GQ:DP        0/1:100:24      0/1:89:15       0/1:100:75
268 3       133122941       rs16838093      C       T       .       PASS    AA=C;DP=140     GT:GQ:DP        0/1:100:24      0/1:90:24       0/1:100:92
269 7       148149944       rs6464926       C       T       .       PASS    AA=C;DP=106     GT:GQ:DP        0/1:100:24      0/1:95:21       0/1:100:63
270 2       52565216        rs35848226      C       T       .       PASS    AA=C;DP=130     GT:GQ:DP        0/1:100:25      0/1:100:20      0/1:100:34
271 1       191951277       rs7541925       A       G       .       PASS    AA=A;DP=93;HM2;HM3      GT:GQ:DP        0/1:100:25      0/1:100:20      0/1:100:35
272 13      69628948        rs584093        G       T       .       PASS    AA=G;DP=88      GT:GQ:DP        0/1:100:25      0/1:100:20      0/1:100:44
273 18      56365268        rs530676        A       C       .       PASS    AA=t;DP=118     GT:GQ:DP        0/1:100:25      0/1:100:21      0/1:100:70
274 1       238407742       rs3765590       A       G       .       PASS    AA=A;DP=100     GT:GQ:DP        0/1:100:25      0/1:100:22      0/1:100:52
275 3       157645261       rs6772280       A       G       .       PASS    AA=A;DP=144     GT:GQ:DP        0/1:100:25      0/1:100:24      0/1:100:50
276 6       53788656        rs7763147       C       T       .       PASS    AA=C;DP=98      GT:GQ:DP        0/1:100:25      0/1:100:24      0/1:100:51
277 7       66922568        rs11763855      A       T       .       PASS    AA=T;DP=119     GT:GQ:DP        0/1:100:25      0/1:100:25      0/1:100:71
278 18      69032545        rs4606821       A       C       .       PASS    AA=C;DP=118     GT:GQ:DP        0/1:100:25      0/1:100:26      0/1:100:61
279 6       109806052       rs1407620       C       T       .       PASS    AA=T;DP=133     GT:GQ:DP        0/1:100:25      0/1:100:27      0/1:100:41
280 1       50260433        rs7551576       A       C       .       PASS    AA=C;DP=109     GT:GQ:DP        0/1:100:25      0/1:100:27      0/1:100:59
281 8       137143328       rs7815902       A       G       .       PASS    AA=A;DP=118     GT:GQ:DP        0/1:100:25      0/1:100:27      0/1:100:64
282 16      61803251        rs35298720      C       T       .       PASS    AA=T;DP=120     GT:GQ:DP        0/1:100:25      0/1:100:27      0/1:100:69
283 6       7322095 rs9392151       A       G       .       PASS    AA=A;DP=135     GT:GQ:DP        0/1:100:25      0/1:100:28      0/1:100:81
284 8       56511888        rs7819696       C       T       .       PASS    AA=C;DP=105     GT:GQ:DP        0/1:100:25      0/1:100:29      0/1:100:51
285 2       205337424       rs2018532       C       T       .       PASS    AA=C;DP=115     GT:GQ:DP        0/1:100:25      0/1:100:30      0/1:100:61
286 9       113847462       rs7854368       A       G       .       PASS    AA=G;DP=130     GT:GQ:DP        0/1:100:25      0/1:100:32      0/1:100:75
287 6       31445851        rs5006725       A       G       .       PASS    AA=a;DP=128     GT:GQ:DP        0/1:100:25      0/1:100:32      0/1:100:76
288 18      26036059        .       A       G       .       PASS    AA=A;DP=126     GT:GQ:DP        0/1:100:25      0/1:10:20       0/1:100:75
289 4       6375147 rs7697730       A       G       .       PASS    AA=G;DP=98      GT:GQ:DP        0/1:100:25      0/1:11:5        0/1:100:66
290 15      96516375        rs55869720      C       T       .       PASS    AA=C;DP=129     GT:GQ:DP        0/1:100:25      0/1:19:19       0/1:100:42
291 16      87258531        rs4782398       G       T       .       PASS    AA=t;DP=118     GT:GQ:DP        0/1:100:25      0/1:20:23       0/1:100:69
292 9       76103714        rs7033695       A       G       .       PASS    AA=A;DP=89      GT:GQ:DP        0/1:100:25      0/1:26:19       0/1:100:43
293 4       34035254        rs28460576      C       G       .       PASS    AA=G;DP=128     GT:GQ:DP        0/1:100:25      0/1:27:36       0/1:100:69
294 9       116080553       .       C       G       .       PASS    AA=N;DP=112     GT:GQ:DP        0/1:100:25      0/1:28:12       0/1:100:77
295 2       234617058       rs596463        G       T       .       PASS    AA=T;DP=94      GT:GQ:DP        0/1:100:25      0/1:33:17       0/1:100:51
296 19      21126743        .       A       G       .       PASS    AA=A;DP=115     GT:GQ:DP        0/1:100:25      0/1:38:19       0/1:100:73
297 3       126736616       .       G       T       .       PASS    AA=G;DP=76      GT:GQ:DP        0/1:100:25      0/1:40:15       0/1:100:39
298 2       71460412        rs10175747      C       T       .       PASS    AA=C;DP=104     GT:GQ:DP        0/1:100:25      0/1:43:18       0/1:100:64
299 11      93011324        rs58172303      C       T       .       PASS    AA=C;DP=115     GT:GQ:DP        0/1:100:25      0/1:45:15       0/1:100:74
300 12      82816046        .       C       T       .       PASS    AA=C;DP=89      GT:GQ:DP        0/1:100:25      0/1:48:18       0/1:100:46
301 3       160994340       rs35176855      C       G       .       PASS    AA=C;DP=104     GT:GQ:DP        0/1:100:25      0/1:51:23       0/1:100:56
302 1       103175856       rs2616012       A       T       .       PASS    AA=T;DP=104     GT:GQ:DP        0/1:100:25      0/1:54:18       0/1:100:49
303 17      30298370        rs8072191       G       T       .       PASS    AA=G;DP=88      GT:GQ:DP        0/1:100:25      0/1:59:12       0/1:100:52
304 4       42426595        rs1993676       C       T       .       PASS    AA=C;DP=120     GT:GQ:DP        0/1:100:25      0/1:60:17       0/1:100:74
305 16      77626307        rs8055815       A       G       .       PASS    AA=A;DP=93      GT:GQ:DP        0/1:100:25      0/1:63:14       0/1:100:51
306 9       17521750        rs57258552      A       G       .       PASS    AA=A;DP=104     GT:GQ:DP        0/1:100:25      0/1:70:17       0/1:100:62
307 14      41581597        rs1632694       C       T       .       PASS    AA=t;DP=100     GT:GQ:DP        0/1:100:25      0/1:72:20       0/1:100:52
308 1       232431187       .       G       T       .       PASS    AA=G;DP=117     GT:GQ:DP        0/1:100:25      0/1:74:18       0/1:100:76
309 4       21574581        rs10516405      G       T       .       PASS    AA=T;DP=109     GT:GQ:DP        0/1:100:25      0/1:75:22       0/1:100:62
310 8       117685440       .       A       G       .       PASS    AA=A;DP=119     GT:GQ:DP        0/1:100:25      0/1:75:23       0/1:100:71
311 4       28432331        rs12651660      C       T       .       PASS    AA=T;DP=108     GT:GQ:DP        0/1:100:25      0/1:83:15       0/1:100:68
312 5       113489144       rs2954362       C       G       .       PASS    AA=C;DP=113     GT:GQ:DP        0/1:100:25      0/1:83:20       0/1:100:65
313 20      9339743 rs56772399      A       G       .       PASS    AA=A;DP=111     GT:GQ:DP        0/1:100:25      0/1:83:21       0/1:100:67
314 12      131060171       rs61944570      C       T       .       PASS    AA=C;DP=123     GT:GQ:DP        0/1:100:25      0/1:85:21       0/1:100:79
315 3       168053993       rs9290299       A       G       .       PASS    AA=a;DP=92      GT:GQ:DP        0/1:100:25      0/1:87:17       0/1:100:49
316 17      72403205        rs35331801      A       G       .       PASS    AA=G;DP=94      GT:GQ:DP        0/1:100:25      0/1:88:16       0/1:100:43
317 7       43172698        rs6945704       A       G       .       PASS    AA=A;DP=95      GT:GQ:DP        0/1:100:25      0/1:90:21       0/1:100:48
318 10      132571669       rs10741231      C       T       .       PASS    AA=t;DP=114     GT:GQ:DP        0/1:100:25      0/1:92:23       0/1:100:67
319 1       222327005       rs2896918       A       G       .       PASS    AA=G;DP=97;HM2  GT:GQ:DP        0/1:100:25      0/1:93:14       0/1:100:57
320 2       70768855        rs7340146       C       T       .       PASS    AA=C;DP=104     GT:GQ:DP        0/1:100:25      0/1:96:21       0/1:100:58
321 1       156985940       rs432682        A       G       .       PASS    AA=A;DP=114;HM2 GT:GQ:DP        0/1:100:25      0/1:96:25       0/1:100:50
322 14      21801724        rs9944066       G       T       .       PASS    AA=G;DP=115     GT:GQ:DP        0/1:100:25      0/1:98:23       0/1:100:65
323 18      28294224        rs9948201       A       G       .       PASS    AA=A;DP=130     GT:GQ:DP        0/1:100:25      0/1:98:26       0/1:100:81
324 8       127000783       rs2054999       C       G       .       PASS    AA=g;DP=107     GT:GQ:DP        0/1:100:25      0/1:98:27       0/1:100:56
325 1       15301392        rs494916        A       G       .       PASS    AA=A;DP=104     GT:GQ:DP        0/1:100:25      0/1:9:13        0/1:100:65
326 3       78822449        .       A       G       .       PASS    AA=G;DP=86      GT:GQ:DP        0/1:100:26      0/1:100:14      0/1:100:47
327 7       29016019        rs547203        G       T       .       PASS    AA=T;DP=100     GT:GQ:DP        0/1:100:26      0/1:100:15      0/1:100:57
328 7       42529103        rs28482312      C       T       .       PASS    AA=T;DP=132     GT:GQ:DP        0/1:100:26      0/1:100:17      0/1:100:86
329 6       3933451 rs6597021       A       G       .       PASS    AA=A;DP=106     GT:GQ:DP        0/1:100:26      0/1:100:19      0/1:100:64
330 1       193769657       rs7526468       A       C       .       PASS    AA=A;DP=105     GT:GQ:DP        0/1:100:26      0/1:100:20      0/1:100:62
331 14      62436745        rs58900215      A       G       .       PASS    AA=A;DP=112     GT:GQ:DP        0/1:100:26      0/1:100:20      0/1:100:66
332 7       88123464        rs17163211      C       G       .       PASS    AA=C;DP=118     GT:GQ:DP        0/1:100:26      0/1:100:20      0/1:100:74
333 10      131487103       .       A       C       .       PASS    AA=A;DP=131     GT:GQ:DP        0/1:100:26      0/1:100:20      0/1:100:85
334 17      12886217        .       G       T       .       PASS    AA=G;DP=101     GT:GQ:DP        0/1:100:26      0/1:100:21      0/1:100:52
335 13      60225815        rs3106554       A       T       .       PASS    AA=T;DP=93      GT:GQ:DP        0/1:100:26      0/1:100:23      0/1:100:36
336 5       27917551        rs10073792      A       G       .       PASS    AA=A;DP=107     GT:GQ:DP        0/1:100:26      0/1:100:23      0/1:100:58
337 1       40311045        rs12061777      C       T       .       PASS    AA=C;DP=99;HM2;HM3      GT:GQ:DP        0/1:100:26      0/1:100:24      0/1:100:49
338 15      86972981        rs16942113      A       C       .       PASS    AA=a;DP=116     GT:GQ:DP        0/1:100:26      0/1:100:24      0/1:100:64
339 6       56849735        rs1870638       A       C       .       PASS    AA=C;DP=115     GT:GQ:DP        0/1:100:26      0/1:100:24      0/1:100:65
340 5       100014052       rs6880868       C       T       .       PASS    AA=c;DP=129     GT:GQ:DP        0/1:100:26      0/1:100:24      0/1:100:78
341 14      29721536        rs10438055      C       T       .       PASS    AA=C;DP=130     GT:GQ:DP        0/1:100:26      0/1:100:24      0/1:100:80
342 4       131063472       rs2952878       A       G       .       PASS    AA=G;DP=116     GT:GQ:DP        0/1:100:26      0/1:100:25      0/1:100:63
343 2       118688898       .       A       G       .       PASS    AA=A;DP=124     GT:GQ:DP        0/1:100:26      0/1:100:26      0/1:100:29
344 5       164891490       rs4485950       C       T       .       PASS    AA=C;DP=93      GT:GQ:DP        0/1:100:26      0/1:100:26      0/1:100:40
345 4       114760711       rs28494872      A       G       .       PASS    AA=A;DP=147     GT:GQ:DP        0/1:100:26      0/1:100:26      0/1:100:55
346 3       151618458       rs61015726      A       C       .       PASS    AA=A;DP=119     GT:GQ:DP        0/1:100:26      0/1:100:27      0/1:100:66
347 16      84531682        rs9927123       A       G       .       PASS    AA=A;DP=158     GT:GQ:DP        0/1:100:26      0/1:100:28      0/1:100:102
348 3       181586202       rs6786246       A       G       .       PASS    AA=G;DP=102     GT:GQ:DP        0/1:100:26      0/1:100:28      0/1:100:51
349 6       122551103       rs2606612       C       T       .       PASS    AA=c;DP=119     GT:GQ:DP        0/1:100:26      0/1:100:28      0/1:100:64
350 20      47329620        rs238195        C       T       .       PASS    AA=T;DP=126     GT:GQ:DP        0/1:100:26      0/1:100:28      0/1:100:72
351 8       2583275 rs35119879      C       T       .       PASS    AA=T;DP=114     GT:GQ:DP        0/1:100:26      0/1:100:29      0/1:100:59
352 2       142583213       rs1900935       A       G       .       PASS    AA=G;DP=126     GT:GQ:DP        0/1:100:26      0/1:100:29      0/1:100:72
353 11      20604245        rs11025661      G       T       .       PASS    AA=G;DP=134     GT:GQ:DP        0/1:100:26      0/1:100:29      0/1:100:79
354 10      18290320        rs7095391       A       T       .       PASS    AA=T;DP=138     GT:GQ:DP        0/1:100:26      0/1:100:29      0/1:100:82
355 9       27344796        rs6475991       C       G       .       PASS    AA=C;DP=149     GT:GQ:DP        0/1:100:26      0/1:100:30      0/1:100:87
356 6       109693929       rs9398192       C       T       .       PASS    AA=C;DP=119     GT:GQ:DP        0/1:100:26      0/1:100:31      0/1:100:62
357 3       133865849       rs61437184      C       T       .       PASS    AA=C;DP=142     GT:GQ:DP        0/1:100:26      0/1:100:31      0/1:100:82
358 3       24956366        rs12629369      C       T       .       PASS    AA=T;DP=120     GT:GQ:DP        0/1:100:26      0/1:100:33      0/1:100:63
359 3       39486283        .       A       G       .       PASS    AA=A;DP=109     GT:GQ:DP        0/1:100:26      0/1:13:22       0/1:100:58
360 22      45679856        rs4823891       A       C       .       PASS    AA=C;DP=117     GT:GQ:DP        0/1:100:26      0/1:14:12       0/1:100:82
361 20      57413979        rs748544        G       T       .       PASS    AA=g;DP=137     GT:GQ:DP        0/1:100:26      0/1:24:21       0/1:100:45
362 15      63440458        .       G       T       .       PASS    AA=G;DP=83      GT:GQ:DP        0/1:100:26      0/1:43:10       0/1:100:47
363 12      22722557        rs58491110      A       G       .       PASS    AA=A;DP=115     GT:GQ:DP        0/1:100:26      0/1:43:14       0/1:100:76
364 9       71693325        rs4475565       C       T       .       PASS    AA=T;DP=70      GT:GQ:DP        0/1:100:26      0/1:43:8        0/1:100:36
365 12      40501304        rs1553034       C       T       .       PASS    AA=C;DP=118     GT:GQ:DP        0/1:100:26      0/1:45:18       0/1:100:76
366 6       107723126       rs2430473       C       T       .       PASS    AA=C;DP=111     GT:GQ:DP        0/1:100:26      0/1:46:18       0/1:100:68
367 7       11963511        .       A       C       .       PASS    AA=A;DP=98      GT:GQ:DP        0/1:100:26      0/1:50:15       0/1:100:56
368 7       42471648        rs10244840      A       G       .       PASS    AA=G;DP=115     GT:GQ:DP        0/1:100:26      0/1:56:19       0/1:100:57
369 13      103136622       rs1412018       C       T       .       PASS    AA=T;DP=106     GT:GQ:DP        0/1:100:26      0/1:56:20       0/1:100:60
370 12      129022096       rs667813        A       G       .       PASS    AA=A;DP=115     GT:GQ:DP        0/1:100:26      0/1:57:24       0/1:100:24
371 2       6561133 rs404690        A       G       .       PASS    AA=G;DP=113     GT:GQ:DP        0/1:100:26      0/1:62:18       0/1:100:69
372 5       23764989        rs4126013       A       G       .       PASS    AA=A;DP=102     GT:GQ:DP        0/1:100:26      0/1:63:14       0/1:100:61
373 13      80606016        rs7337088       A       G       .       PASS    AA=A;DP=74      GT:GQ:DP        0/1:100:26      0/1:64:11       0/1:100:34
374 20      865817  rs531356        C       T       .       PASS    AA=C;DP=84      GT:GQ:DP        0/1:100:26      0/1:65:19       0/1:100:31
375 7       95311486        rs4729215       A       G       .       PASS    AA=A;DP=113     GT:GQ:DP        0/1:100:26      0/1:65:22       0/1:100:64
376 9       15943591        rs2149231       G       T       .       PASS    AA=G;DP=107     GT:GQ:DP        0/1:100:26      0/1:65:23       0/1:100:59
377 8       36681849        rs1892621       C       G       .       PASS    AA=G;DP=115     GT:GQ:DP        0/1:100:26      0/1:68:31       0/1:100:59
378 3       97133959        rs986440        G       T       .       PASS    AA=T;DP=105     GT:GQ:DP        0/1:100:26      0/1:70:16       0/1:100:58
379 10      106898541       rs2167623       A       G       .       PASS    AA=N;DP=114     GT:GQ:DP        0/1:100:26      0/1:71:21       0/1:100:65
380 8       21830882        rs6993540       A       T       .       PASS    AA=A;DP=119     GT:GQ:DP        0/1:100:26      0/1:74:16       0/1:100:78
381 4       144608373       rs7696619       A       G       .       PASS    AA=G;DP=125     GT:GQ:DP        0/1:100:26      0/1:75:23       0/1:100:75
382 5       2158709 rs10051274      C       T       .       PASS    AA=T;DP=113     GT:GQ:DP        0/1:100:26      0/1:77:19       0/1:100:68
383 13      62541675        .       A       G       .       PASS    AA=A;DP=145     GT:GQ:DP        0/1:100:26      0/1:79:32       0/1:84:56
384 9       2531139 rs829972        G       T       .       PASS    AA=g;DP=109     GT:GQ:DP        0/1:100:26      0/1:80:21       0/1:100:64
385 1       151052323       rs7531043       C       T       .       PASS    AA=C;DP=124     GT:GQ:DP        0/1:100:26      0/1:83:23       0/1:100:72
386 19      6783880 rs11668094      A       G       .       PASS    AA=G;DP=160     GT:GQ:DP        0/1:100:26      0/1:85:25       0/1:100:52
387 2       161505759       rs1524625       A       G       .       PASS    AA=A;DP=137     GT:GQ:DP        0/1:100:26      0/1:86:24       0/1:100:42
388 4       19191090        .       A       T       .       PASS    AA=A;DP=110     GT:GQ:DP        0/1:100:26      0/1:88:17       0/1:100:67
389 18      8128090 rs687245        A       G       .       PASS    AA=A;DP=114     GT:GQ:DP        0/1:100:26      0/1:88:18       0/1:100:69
390 5       94345984        rs2033709       C       T       .       PASS    AA=C;DP=115     GT:GQ:DP        0/1:100:26      0/1:90:20       0/1:100:54
391 20      43281493        rs6104065       C       G       .       PASS    AA=G;DP=97      GT:GQ:DP        0/1:100:26      0/1:90:23       0/1:100:46
392 19      61710506        rs58464193      C       T       .       PASS    AA=.;DP=131     GT:GQ:DP        0/1:100:26      0/1:91:15       0/1:100:87
393 1       178426531       rs12091464      C       T       .       PASS    AA=C;DP=120;HM2 GT:GQ:DP        0/1:100:26      0/1:93:20       0/1:100:74
394 1       100129629       rs2035960       A       G       .       PASS    AA=N;DP=102     GT:GQ:DP        0/1:100:26      0/1:93:24       0/1:100:52
395 2       183366437       rs288297        G       T       .       PASS    AA=G;DP=152     GT:GQ:DP        0/1:100:26      0/1:93:26       0/1:100:57
396 7       26813185        rs532320        C       T       .       PASS    AA=T;DP=136     GT:GQ:DP        0/1:100:26      0/1:93:37       0/1:100:71
397 4       59786354        rs13152529      A       G       .       PASS    AA=G;DP=114     GT:GQ:DP        0/1:100:26      0/1:94:15       0/1:100:70
398 7       145523150       rs12703790      A       T       .       PASS    AA=T;DP=103     GT:GQ:DP        0/1:100:26      0/1:94:22       0/1:100:57
399 10      25799073        rs2480346       A       G       .       PASS    AA=G;DP=128     GT:GQ:DP        0/1:100:26      0/1:94:24       0/1:100:68
400 10      16635452        rs61024175      A       G       .       PASS    AA=A;DP=126     GT:GQ:DP        0/1:100:26      0/1:95:16       0/1:100:86
401 16      15563705        rs7198957       A       G       .       PASS    AA=A;DP=106     GT:GQ:DP        0/1:100:26      0/1:95:23       0/1:100:56
402 9       18740076        rs563006        C       T       .       PASS    AA=T;DP=127     GT:GQ:DP        0/1:100:26      0/1:96:24       0/1:100:78
403 7       85740397        rs58202480      C       T       .       PASS    AA=C;DP=115     GT:GQ:DP        0/1:100:26      0/1:97:22       0/1:100:68
404 5       126045704       rs6595727       A       C       .       PASS    AA=C;DP=113     GT:GQ:DP        0/1:100:26      0/1:97:33       0/1:100:47
405 5       73448443        rs523423        C       G       .       PASS    AA=C;DP=105     GT:GQ:DP        0/1:100:26      0/1:98:23       0/1:100:58
406 2       79097005        rs430601        A       T       .       PASS    AA=T;DP=114     GT:GQ:DP        0/1:100:26      0/1:98:29       0/1:100:62
407 3       181451181       .       A       G       .       PASS    AA=A;DP=127     GT:GQ:DP        0/1:100:26      0/1:99:23       0/1:100:77
408 12      84756297        rs1900700       C       T       .       PASS    AA=T;DP=87      GT:GQ:DP        0/1:100:27      0/1:100:17      0/1:100:40
409 11      22523773        rs1399103       A       C       .       PASS    AA=C;DP=106     GT:GQ:DP        0/1:100:27      0/1:100:18      0/1:100:62
410 3       191099236       rs4687102       G       T       .       PASS    AA=T;DP=112     GT:GQ:DP        0/1:100:27      0/1:100:19      0/1:100:51
411 15      31020906        rs12916094      G       T       .       PASS    AA=T;DP=91      GT:GQ:DP        0/1:100:27      0/1:100:22      0/1:100:44
412 3       99333090        .       A       C       .       PASS    AA=A;DP=109     GT:GQ:DP        0/1:100:27      0/1:100:24      0/1:48:58
413 12      79993876        rs11114748      C       T       .       PASS    AA=C;DP=123     GT:GQ:DP        0/1:100:27      0/1:100:25      0/1:100:71
414 19      33997375        rs7256398       C       T       .       PASS    AA=C;DP=120     GT:GQ:DP        0/1:100:27      0/1:100:25      0/1:100:72
415 6       56541766        rs6926648       A       C       .       PASS    AA=C;DP=101     GT:GQ:DP        0/1:100:27      0/1:100:27      0/1:100:48
416 10      111028499       rs10787144      A       G       .       PASS    AA=G;DP=113     GT:GQ:DP        0/1:100:27      0/1:100:27      0/1:100:60
417 3       181940325       .       A       G       .       PASS    AA=G;DP=114     GT:GQ:DP        0/1:100:27      0/1:100:27      0/1:100:60
418 1       208389644       rs4844508       C       T       .       PASS    AA=T;DP=119;HM2 GT:GQ:DP        0/1:100:27      0/1:100:27      0/1:100:66
419 7       54391623        rs1525138       C       T       .       PASS    AA=T;DP=135     GT:GQ:DP        0/1:100:27      0/1:100:28      0/1:100:82
420 1       100362246       .       C       T       .       PASS    AA=C;DP=128     GT:GQ:DP        0/1:100:27      0/1:100:29      0/1:100:72
421 2       29609623        rs4503952       A       G       .       PASS    AA=G;DP=116     GT:GQ:DP        0/1:100:27      0/1:100:30      0/1:100:59
422 8       81454531        .       A       G       .       PASS    AA=G;DP=124     GT:GQ:DP        0/1:100:27      0/1:100:30      0/1:100:67
423 9       99082852        rs7855042       A       G       .       PASS    AA=A;DP=127     GT:GQ:DP        0/1:100:27      0/1:100:30      0/1:100:70
424 4       10615650        rs2086774       A       T       .       PASS    AA=T;DP=130     GT:GQ:DP        0/1:100:27      0/1:100:30      0/1:100:76
425 14      38665544        rs12101069      G       T       .       PASS    AA=G;DP=123     GT:GQ:DP        0/1:100:27      0/1:100:31      0/1:100:66
426 12      31278615        rs11609262      G       T       .       PASS    AA=G;DP=127     GT:GQ:DP        0/1:100:27      0/1:100:31      0/1:100:69
427 10      62750722        rs10740045      C       G       .       PASS    AA=C;DP=131     GT:GQ:DP        0/1:100:27      0/1:100:31      0/1:100:75
428 1       66949701        rs17129371      C       T       .       PASS    AA=C;DP=119;HM2 GT:GQ:DP        0/1:100:27      0/1:100:33      0/1:100:57
429 7       124111103       rs60017067      A       T       .       PASS    AA=A;DP=154     GT:GQ:DP        0/1:100:27      0/1:100:37      0/1:100:91
430 6       147309970       rs7742400       A       G       .       PASS    AA=A;DP=122     GT:GQ:DP        0/1:100:27      0/1:23:22       0/1:100:75
431 8       54681840        rs11785059      G       T       .       PASS    AA=T;DP=80      GT:GQ:DP        0/1:100:27      0/1:30:15       0/1:100:39
432 4       128360806       .       C       G       .       PASS    AA=C;DP=103     GT:GQ:DP        0/1:100:27      0/1:31:16       0/1:100:55
433 11      66841337        rs4930418       C       T       .       PASS    AA=C;DP=95      GT:GQ:DP        0/1:100:27      0/1:32:10       0/1:100:59
434 10      85277673        rs10886544      G       T       .       PASS    AA=G;DP=93      GT:GQ:DP        0/1:100:27      0/1:34:9        0/1:100:55
435 6       71475203        rs9354937       A       G       .       PASS    AA=A;DP=101     GT:GQ:DP        0/1:100:27      0/1:36:30       0/1:100:32
436 2       128569576       rs11690581      C       T       .       PASS    AA=C;DP=102     GT:GQ:DP        0/1:100:27      0/1:37:12       0/1:100:64
437 2       236821572       rs13429797      A       G       .       PASS    AA=G;DP=119     GT:GQ:DP        0/1:100:27      0/1:38:12       0/1:100:82
438 7       6028195 rs7811724       C       T       .       PASS    AA=T;DP=109     GT:GQ:DP        0/1:100:27      0/1:51:18       0/1:100:64
439 4       86949538        rs6815441       C       T       .       PASS    AA=C;DP=85      GT:GQ:DP        0/1:100:27      0/1:54:16       0/1:100:42
440 14      48408345        rs4614645       A       T       .       PASS    AA=T;DP=132     GT:GQ:DP        0/1:100:27      0/1:54:23       0/1:100:74
441 16      48003568        rs7199569       A       G       .       PASS    AA=G;DP=108     GT:GQ:DP        0/1:100:27      0/1:55:12       0/1:100:71
442 10      92356151        rs2800131       A       C       .       PASS    AA=N;DP=94      GT:GQ:DP        0/1:100:27      0/1:57:13       0/1:100:38
443 20      51683622        .       A       T       .       PASS    AA=A;DP=127     GT:GQ:DP        0/1:100:27      0/1:58:21       0/1:100:82
444 16      9307225 rs631208        A       G       .       PASS    AA=G;DP=116     GT:GQ:DP        0/1:100:27      0/1:58:23       0/1:100:66
445 13      33760926        .       C       T       .       PASS    AA=C;DP=130     GT:GQ:DP        0/1:100:27      0/1:59:28       0/1:100:75
446 4       33413223        rs13130631      A       G       .       PASS    AA=a;DP=116     GT:GQ:DP        0/1:100:27      0/1:59:30       0/1:100:60
447 4       190463941       rs28561813      G       T       .       PASS    AA=G;DP=103     GT:GQ:DP        0/1:100:27      0/1:60:19       0/1:100:56
448 11      131346779       rs3345  A       G       .       PASS    AA=A;DP=108     GT:GQ:DP        0/1:100:27      0/1:62:18       0/1:100:66
449 6       71598010        rs59058072      G       T       .       PASS    AA=G;DP=106     GT:GQ:DP        0/1:100:27      0/1:62:22       0/1:100:54
450 5       107188016       rs3909359       C       T       .       PASS    AA=C;DP=87      GT:GQ:DP        0/1:100:27      0/1:63:9        0/1:100:51
451 11      7043471 rs4758155       A       G       .       PASS    AA=a;DP=100     GT:GQ:DP        0/1:100:27      0/1:67:12       0/1:100:61
452 4       21891893        .       A       C       .       PASS    AA=C;DP=96      GT:GQ:DP        0/1:100:27      0/1:67:16       0/1:100:51
453 4       6345206 rs4467645       C       T       .       PASS    AA=C;DP=120     GT:GQ:DP        0/1:100:27      0/1:70:15       0/1:100:74
454 13      92605857        rs471379        G       T       .       PASS    AA=T;DP=86      GT:GQ:DP        0/1:100:27      0/1:71:12       0/1:100:42
455 1       21511754        rs213010        A       G       .       PASS    AA=G;DP=106;HM2;HM3     GT:GQ:DP        0/1:100:27      0/1:72:18       0/1:100:59
456 1       182786253       rs35430213      A       G       .       PASS    AA=A;DP=107     GT:GQ:DP        0/1:100:27      0/1:72:18       0/1:100:63
457 8       90014079        .       G       T       .       PASS    AA=G;DP=97      GT:GQ:DP        0/1:100:27      0/1:74:18       0/1:100:48
458 14      90234484        rs1742102       C       T       .       PASS    AA=C;DP=112     GT:GQ:DP        0/1:100:27      0/1:76:21       0/1:100:64
459 3       100227344       rs2449054       A       C       .       PASS    AA=C;DP=92      GT:GQ:DP        0/1:100:27      0/1:78:16       0/1:100:55
460 5       102059819       rs2545558       C       T       .       PASS    AA=C;DP=121     GT:GQ:DP        0/1:100:27      0/1:78:23       0/1:100:57
461 12      40120671        rs2733274       A       G       .       PASS    AA=A;DP=106     GT:GQ:DP        0/1:100:27      0/1:82:25       0/1:100:56
462 13      109744075       rs9559764       A       G       .       PASS    AA=G;DP=129     GT:GQ:DP        0/1:100:27      0/1:82:30       0/1:100:71
463 4       175910719       rs13113891      A       G       .       PASS    AA=A;DP=108     GT:GQ:DP        0/1:100:27      0/1:84:16       0/1:100:67
464 9       31080897        rs10970098      A       G       .       PASS    AA=A;DP=109     GT:GQ:DP        0/1:100:27      0/1:85:21       0/1:100:61
465 6       12457723        rs6899475       C       T       .       PASS    AA=T;DP=140     GT:GQ:DP        0/1:100:27      0/1:88:26       0/1:100:46
466 12      107229032       rs17040378      C       G       .       PASS    AA=C;DP=128     GT:GQ:DP        0/1:100:27      0/1:89:21       0/1:100:41
467 4       22684587        rs7699664       A       G       .       PASS    AA=G;DP=96      GT:GQ:DP        0/1:100:27      0/1:90:20       0/1:100:42
468 7       118381360       rs4132444       G       T       .       PASS    AA=G;DP=97      GT:GQ:DP        0/1:100:27      0/1:92:22       0/1:100:48
469 21      25245217        .       C       G       .       PASS    AA=C;DP=139     GT:GQ:DP        0/1:100:27      0/1:95:28       0/1:100:79
470 9       97894860        rs7045648       G       T       .       PASS    AA=T;DP=124     GT:GQ:DP        0/1:100:27      0/1:97:22       0/1:100:77
471 2       66872791        .       A       G       .       PASS    AA=A;DP=113     GT:GQ:DP        0/1:100:28      0/1:100:19      0/1:100:67
472 2       149686710       rs11888103      A       G       .       PASS    AA=A;DP=96      GT:GQ:DP        0/1:100:28      0/1:100:20      0/1:100:36
473 2       176209990       rs10174751      A       T       .       PASS    AA=A;DP=112     GT:GQ:DP        0/1:100:28      0/1:100:20      0/1:100:62
474 5       121272983       rs13356688      C       T       .       PASS    AA=T;DP=112     GT:GQ:DP        0/1:100:28      0/1:100:21      0/1:100:60
475 18      17890312        rs8090022       C       T       .       PASS    AA=C;DP=123     GT:GQ:DP        0/1:100:28      0/1:100:23      0/1:100:77
476 19      11643397        .       A       C       .       PASS    AA=a;DP=77      GT:GQ:DP        0/1:100:28      0/1:100:24      0/1:100:21
477 2       1803129 rs6755207       C       T       .       PASS    AA=T;DP=139     GT:GQ:DP        0/1:100:28      0/1:100:24      0/1:100:42
478 2       6716571 rs13412007      C       T       .       PASS    AA=T;DP=110     GT:GQ:DP        0/1:100:28      0/1:100:24      0/1:100:58
479 12      42280001        rs1478616       C       T       .       PASS    AA=C;DP=129     GT:GQ:DP        0/1:100:28      0/1:100:24      0/1:100:77
480 8       89926466        rs17365359      C       T       .       PASS    AA=C;DP=115     GT:GQ:DP        0/1:100:28      0/1:100:25      0/1:100:62
481 8       11874764        rs7827305       G       T       .       PASS    AA=T;DP=130     GT:GQ:DP        0/1:100:28      0/1:100:25      0/1:100:78
482 7       77778470        rs798286        A       T       .       PASS    AA=A;DP=139     GT:GQ:DP        0/1:100:28      0/1:100:26      0/1:100:40
483 5       78312230        rs1717570       A       G       .       PASS    AA=A;DP=98      GT:GQ:DP        0/1:100:28      0/1:100:26      0/1:100:44
484 2       29980976        .       C       T       .       PASS    AA=C;DP=108     GT:GQ:DP        0/1:100:28      0/1:100:26      0/1:100:56
485 4       131193653       rs10518560      C       G       .       PASS    AA=C;DP=108     GT:GQ:DP        0/1:100:28      0/1:100:27      0/1:100:51
486 2       5313080 rs9751581       C       G       .       PASS    AA=G;DP=112     GT:GQ:DP        0/1:100:28      0/1:100:27      0/1:100:55
487 9       84806632        rs998119        C       T       .       PASS    AA=T;DP=126     GT:GQ:DP        0/1:100:28      0/1:100:27      0/1:100:67
488 8       33974759        .       A       G       .       PASS    AA=A;DP=148     GT:GQ:DP        0/1:100:28      0/1:100:27      0/1:100:86
489 8       25158021        rs17053232      C       T       .       PASS    AA=C;DP=129     GT:GQ:DP        0/1:100:28      0/1:100:28      0/1:100:72
490 13      45418874        rs9534258       C       G       .       PASS    AA=C;DP=137     GT:GQ:DP        0/1:100:28      0/1:100:28      0/1:100:81
491 1       215504627       rs6604663       A       G       .       PASS    AA=G;DP=122;HM2 GT:GQ:DP        0/1:100:28      0/1:100:29      0/1:100:66
492 2       231405494       rs60623145      C       T       .       PASS    AA=T;DP=158     GT:GQ:DP        0/1:100:28      0/1:100:29      0/1:100:98
493 4       15688833        rs2313731       C       T       .       PASS    AA=C;DP=140     GT:GQ:DP        0/1:100:28      0/1:100:30      0/1:100:82
494 3       55715872        rs815427        A       G       .       PASS    AA=G;DP=123     GT:GQ:DP        0/1:100:28      0/1:100:31      0/1:100:64
495 3       25378365        rs11917951      C       T       .       PASS    AA=C;DP=94      GT:GQ:DP        0/1:100:28      0/1:17:8        0/1:100:42
496 7       128099686       rs11769769      C       T       .       PASS    AA=c;DP=98      GT:GQ:DP        0/1:100:28      0/1:19:12       0/1:100:57
497 1       32108685        rs671101        A       G       .       PASS    AA=G;DP=103;HM2;HM3     GT:GQ:DP        0/1:100:28      0/1:21:13       0/1:100:58
498 11      24891839        rs10767276      A       G       .       PASS    AA=G;DP=93      GT:GQ:DP        0/1:100:28      0/1:21:22       0/1:100:44
499 7       40995424        rs12673875      C       T       .       PASS    AA=T;DP=114     GT:GQ:DP        0/1:100:28      0/1:24:19       0/1:100:68
500 7       16426184        rs10464287      A       G       .       PASS    AA=A;DP=93      GT:GQ:DP        0/1:100:28      0/1:28:14       0/1:100:50
501 7       125428257       rs1362029       A       T       .       PASS    AA=A;DP=64      GT:GQ:DP        0/1:100:28      0/1:37:9        0/1:5:17
502 11      125800409       rs57340642      C       T       .       PASS    AA=C;DP=141     GT:GQ:DP        0/1:100:28      0/1:38:13       0/1:100:59
503 11      119989068       rs11603831      C       T       .       PASS    AA=C;DP=114     GT:GQ:DP        0/1:100:28      0/1:45:19       0/1:100:65
504 18      54312584        rs4343369       A       T       .       PASS    AA=T;DP=137     GT:GQ:DP        0/1:100:28      0/1:45:32       0/1:100:78
505 10      85961257        .       A       G       .       PASS    AA=A;DP=106     GT:GQ:DP        0/1:100:28      0/1:45:9        0/1:100:69
506 5       81770493        rs12654907      A       G       .       PASS    AA=A;DP=93      GT:GQ:DP        0/1:100:28      0/1:49:15       0/1:100:49
507 19      59740082        rs17606836      C       T       .       PASS    AA=C;DP=90      GT:GQ:DP        0/1:100:28      0/1:54:14       0/1:100:39
508 2       127060617       rs10204012      G       T       .       PASS    AA=G;DP=112     GT:GQ:DP        0/1:100:28      0/1:57:15       0/1:100:69
509 3       147307168       rs9289716       A       G       .       PASS    AA=A;DP=117     GT:GQ:DP        0/1:100:28      0/1:60:29       0/1:100:61
510 13      78992994        rs55887763      C       T       .       PASS    AA=T;DP=97      GT:GQ:DP        0/1:100:28      0/1:64:14       0/1:100:57
511 8       15699452        rs429004        C       T       .       PASS    AA=T;DP=141     GT:GQ:DP        0/1:100:28      0/1:67:25       0/1:100:49
512 22      39742874        rs8138520       A       G       .       PASS    AA=G;DP=119     GT:GQ:DP        0/1:100:28      0/1:69:18       0/1:100:74
513 17      52458209        rs8066030       C       T       .       PASS    AA=C;DP=107     GT:GQ:DP        0/1:100:28      0/1:69:23       0/1:100:58
514 5       2761878 rs10046058      A       G       .       PASS    AA=A;DP=102     GT:GQ:DP        0/1:100:28      0/1:6:14        0/1:100:49
515 8       40884541        rs6474279       A       T       .       PASS    AA=T;DP=126     GT:GQ:DP        0/1:100:28      0/1:70:23       0/1:100:77
516 5       72714919        rs61189560      A       G       .       PASS    AA=A;DP=134     GT:GQ:DP        0/1:100:28      0/1:71:19       0/1:100:86
517 3       84039580        rs13061586      A       G       .       PASS    AA=G;DP=140     GT:GQ:DP        0/1:100:28      0/1:72:29       0/1:100:83
518 10      24624368        rs387690        C       T       .       PASS    AA=T;DP=127     GT:GQ:DP        0/1:100:28      0/1:74:16       0/1:100:83
519 5       15053084        .       A       G       .       PASS    AA=G;DP=99      GT:GQ:DP        0/1:100:28      0/1:75:20       0/1:100:53
520 9       27721281        .       A       G       .       PASS    AA=A;DP=138     GT:GQ:DP        0/1:100:28      0/1:75:26       0/1:100:86
521 16      5031364 rs1108121       A       G       .       PASS    AA=A;DP=130     GT:GQ:DP        0/1:100:28      0/1:78:21       0/1:100:80
522 8       122616451       rs7835355       A       G       .       PASS    AA=G;DP=103     GT:GQ:DP        0/1:100:28      0/1:81:17       0/1:100:57
523 7       128208836       .       C       T       .       PASS    AA=C;DP=146     GT:GQ:DP        0/1:100:28      0/1:82:32       0/1:100:86
524 4       9798311 rs62285986      A       G       .       PASS    AA=G;DP=127     GT:GQ:DP        0/1:100:28      0/1:83:28       0/1:100:73
525 17      14104855        rs7214616       C       G       .       PASS    AA=c;DP=130     GT:GQ:DP        0/1:100:28      0/1:84:20       0/1:100:82
526 15      98346693        rs2117805       A       G       .       PASS    AA=G;DP=146     GT:GQ:DP        0/1:100:28      0/1:85:24       0/1:100:96
527 7       51034141        rs12719021      A       G       .       PASS    AA=A;DP=125     GT:GQ:DP        0/1:100:28      0/1:87:23       0/1:100:59
528 9       121295269       .       C       G       .       PASS    AA=G;DP=151     GT:GQ:DP        0/1:100:28      0/1:87:33       0/1:100:91
529 13      39995036        rs9566540       A       T       .       PASS    AA=T;DP=80      GT:GQ:DP        0/1:100:28      0/1:88:17       0/1:100:23
530 5       112639669       rs1845289       G       T       .       PASS    AA=G;DP=99      GT:GQ:DP        0/1:100:28      0/1:89:20       0/1:100:44
531 2       237609317       rs35943330      A       G       .       PASS    AA=G;DP=119     GT:GQ:DP        0/1:100:28      0/1:90:16       0/1:100:71
532 3       43484842        rs7636753       A       T       .       PASS    AA=A;DP=135     GT:GQ:DP        0/1:100:28      0/1:91:30       0/1:100:79
533 6       145263862       .       A       G       .       PASS    AA=A;DP=89      GT:GQ:DP        0/1:100:28      0/1:92:16       0/1:100:45
534 22      17344821        .       C       T       .       PASS    AA=T;DP=146     GT:GQ:DP        0/1:100:28      0/1:92:27       0/1:100:50
535 5       174121527       rs4571489       A       G       .       PASS    AA=A;DP=120     GT:GQ:DP        0/1:100:28      0/1:93:26       0/1:100:66
536 18      28610645        rs715401        C       T       .       PASS    AA=c;DP=112     GT:GQ:DP        0/1:100:28      0/1:95:18       0/1:100:67
537 3       28410098        rs11924173      A       G       .       PASS    AA=G;DP=99      GT:GQ:DP        0/1:100:28      0/1:96:20       0/1:100:52
538 17      65976257        rs10221267      C       T       .       PASS    AA=T;DP=99      GT:GQ:DP        0/1:100:28      0/1:97:16       0/1:100:54
539 8       31263340        rs6985426       A       G       .       PASS    AA=A;DP=112     GT:GQ:DP        0/1:100:28      0/1:99:23       0/1:100:49
540 14      88591150        .       A       G       .       PASS    AA=G;DP=102     GT:GQ:DP        0/1:100:29      0/1:100:18      0/1:100:56
541 18      37674779        rs7504933       C       T       .       PASS    AA=T;DP=116     GT:GQ:DP        0/1:100:29      0/1:100:18      0/1:100:68
542 14      19914858        rs1760906       A       G       .       PASS    AA=A;DP=106     GT:GQ:DP        0/1:100:29      0/1:100:19      0/1:100:59
543 16      56188336        rs4553621       G       T       .       PASS    AA=G;DP=106     GT:GQ:DP        0/1:100:29      0/1:100:19      0/1:100:60
544 11      106954716       rs597836        C       T       .       PASS    AA=C;DP=117     GT:GQ:DP        0/1:100:29      0/1:100:19      0/1:100:71
545 13      71690517        rs56658200      A       T       .       PASS    AA=T;DP=80      GT:GQ:DP        0/1:100:29      0/1:100:20      0/1:100:20
546 11      45457003        rs4755996       A       G       .       PASS    AA=A;DP=111     GT:GQ:DP        0/1:100:29      0/1:100:20      0/1:100:60
547 12      96622180        rs12230660      A       G       .       PASS    AA=a;DP=129     GT:GQ:DP        0/1:100:29      0/1:100:21      0/1:100:82
548 3       169205391       rs10936549      C       T       .       PASS    AA=C;DP=116     GT:GQ:DP        0/1:100:29      0/1:100:22      0/1:100:64
549 10      77092708        rs7068634       A       G       .       PASS    AA=A;DP=121     GT:GQ:DP        0/1:100:29      0/1:100:22      0/1:100:72
550 3       4369767 rs2819565       A       T       .       PASS    AA=T;DP=102     GT:GQ:DP        0/1:100:29      0/1:100:23      0/1:100:51
551 9       88475752        rs7860045       A       G       .       PASS    AA=G;DP=136     GT:GQ:DP        0/1:100:29      0/1:100:24      0/1:100:40
552 11      41337927        rs12296059      A       G       .       PASS    AA=A;DP=102     GT:GQ:DP        0/1:100:29      0/1:100:24      0/1:100:47
553 10      110048791       rs161018        C       T       .       PASS    AA=c;DP=122     GT:GQ:DP        0/1:100:29      0/1:100:24      0/1:100:70
554 8       13866037        .       A       G       .       PASS    AA=A;DP=146     GT:GQ:DP        0/1:100:29      0/1:100:24      0/1:100:91
555 5       9524319 rs16882862      C       T       .       PASS    AA=C;DP=135     GT:GQ:DP        0/1:100:29      0/1:100:25      0/1:100:41
556 6       163435191       rs561216        C       T       .       PASS    AA=T;DP=113     GT:GQ:DP        0/1:100:29      0/1:100:25      0/1:100:58
557 4       174584050       rs2086477       A       C       .       PASS    AA=A;DP=113     GT:GQ:DP        0/1:100:29      0/1:100:25      0/1:100:62
558 6       32462498        rs1555115       C       G       .       PASS    AA=N;DP=128     GT:GQ:DP        0/1:100:29      0/1:100:25      0/1:100:74
559 5       150038068       rs11950324      C       T       .       PASS    AA=T;DP=125     GT:GQ:DP        0/1:100:29      0/1:100:25      0/1:100:76
560 8       3868272 rs2688332       C       T       .       PASS    AA=C;DP=106     GT:GQ:DP        0/1:100:29      0/1:100:25      0/1:96:42
561 5       170723625       rs7714336       A       C       .       PASS    AA=C;DP=128     GT:GQ:DP        0/1:100:29      0/1:100:26      0/1:100:73
562 22      31688708        .       A       G       .       PASS    AA=A;DP=129     GT:GQ:DP        0/1:100:29      0/1:100:27      0/1:100:33
563 13      59861350        rs1341837       C       T       .       PASS    AA=C;DP=115     GT:GQ:DP        0/1:100:29      0/1:100:27      0/1:100:59
564 18      67506978        .       A       G       .       PASS    AA=a;DP=120     GT:GQ:DP        0/1:100:29      0/1:100:27      0/1:100:63
565 8       135002418       rs16905030      C       T       .       PASS    AA=C;DP=148     GT:GQ:DP        0/1:100:29      0/1:100:28      0/1:100:50
566 8       127258454       rs4493875       A       C       .       PASS    AA=C;DP=114     GT:GQ:DP        0/1:100:29      0/1:100:28      0/1:100:57
567 18      8316208 rs2509543       A       C       .       PASS    AA=A;DP=120     GT:GQ:DP        0/1:100:29      0/1:100:29      0/1:100:60
568 6       54602470        rs1280719       A       G       .       PASS    AA=G;DP=130     GT:GQ:DP        0/1:100:29      0/1:100:29      0/1:100:73
569 8       96904556        rs568815        A       C       .       PASS    AA=A;DP=149     GT:GQ:DP        0/1:100:29      0/1:100:30      0/1:100:49
570 4       102861367       rs7660525       A       G       .       PASS    AA=A;DP=127     GT:GQ:DP        0/1:100:29      0/1:100:30      0/1:100:67
571 2       69921368        rs56347203      A       C       .       PASS    AA=A;DP=122     GT:GQ:DP        0/1:100:29      0/1:100:31      0/1:100:62
572 6       31410621        rs11968046      C       T       .       PASS    AA=c;DP=143     GT:GQ:DP        0/1:100:29      0/1:100:31      0/1:100:84
573 4       23685804        rs6846769       A       C       .       PASS    AA=C;DP=145     GT:GQ:DP        0/1:100:29      0/1:100:32      0/1:100:84
574 6       107126573       rs9486410       A       G       .       PASS    AA=G;DP=147     GT:GQ:DP        0/1:100:29      0/1:100:34      0/1:100:44
575 2       12604151        rs6716755       C       T       .       PASS    AA=C;DP=130     GT:GQ:DP        0/1:100:29      0/1:100:35      0/1:100:67
576 2       169445779       .       A       T       .       PASS    AA=A;DP=157     GT:GQ:DP        0/1:100:29      0/1:100:35      0/1:100:89
577 3       192274339       rs1397536       C       G       .       PASS    AA=C;DP=158     GT:GQ:DP        0/1:100:29      0/1:100:41      0/1:100:88
578 9       136272892       rs9785244       G       T       .       PASS    AA=t;DP=77      GT:GQ:DP        0/1:100:29      0/1:31:8        0/1:100:41
579 22      40639518        rs7292594       C       G       .       PASS    AA=C;DP=126     GT:GQ:DP        0/1:100:29      0/1:35:12       0/1:100:80
580 1       117262047       .       C       T       .       PASS    AA=C;DP=123     GT:GQ:DP        0/1:100:29      0/1:38:19       0/1:100:76
581 5       149548385       .       C       T       .       PASS    AA=C;DP=140     GT:GQ:DP        0/1:100:29      0/1:38:22       0/1:100:88
582 4       40576014        rs16852577      A       G       .       PASS    AA=a;DP=132     GT:GQ:DP        0/1:100:29      0/1:45:24       0/1:100:84
583 13      61605368        rs7334518       C       T       .       PASS    AA=T;DP=94      GT:GQ:DP        0/1:100:29      0/1:46:17       0/1:100:48
584 12      45821910        rs12578367      C       T       .       PASS    AA=T;DP=124     GT:GQ:DP        0/1:100:29      0/1:46:20       0/1:100:74
585 3       66950672        rs7637409       C       T       .       PASS    AA=T;DP=117     GT:GQ:DP        0/1:100:29      0/1:47:14       0/1:100:75
586 4       8140498 rs2292739       C       T       .       PASS    AA=C;DP=88      GT:GQ:DP        0/1:100:29      0/1:52:9        0/1:100:50
587 1       236569178       rs9428718       A       G       .       PASS    AA=G;DP=89      GT:GQ:DP        0/1:100:29      0/1:53:13       0/1:100:48
588 9       32892698        rs13302598      C       T       .       PASS    AA=C;DP=109     GT:GQ:DP        0/1:100:29      0/1:54:16       0/1:100:64
589 14      54299073        rs17127918      C       T       .       PASS    AA=T;DP=106     GT:GQ:DP        0/1:100:29      0/1:55:16       0/1:100:61
590 11      22646423        rs12280763      A       T       .       PASS    AA=A;DP=109     GT:GQ:DP        0/1:100:29      0/1:57:22       0/1:100:61
591 7       4022480 .       A       G       .       PASS    AA=A;DP=104     GT:GQ:DP        0/1:100:29      0/1:60:18       0/1:100:42
592 10      11843665        rs10795889      A       G       .       PASS    AA=G;DP=110     GT:GQ:DP        0/1:100:29      0/1:60:18       0/1:100:63
593 7       64329621        rs7799516       C       T       .       PASS    AA=N;DP=119     GT:GQ:DP        0/1:100:29      0/1:61:22       0/1:100:70
594 9       75967231        rs10869337      C       T       .       PASS    AA=T;DP=114     GT:GQ:DP        0/1:100:29      0/1:61:28       0/1:100:58
595 3       154577607       rs9853186       A       G       .       PASS    AA=G;DP=112     GT:GQ:DP        0/1:100:29      0/1:63:23       0/1:100:56
596 1       12738259        .       C       T       .       PASS    AA=C;DP=136     GT:GQ:DP        0/1:100:29      0/1:64:14       0/1:100:89
597 5       109127456       rs11960588      C       T       .       PASS    AA=C;DP=105     GT:GQ:DP        0/1:100:29      0/1:65:28       0/1:100:39
598 1       52482068        rs10888749      C       T       .       PASS    AA=T;DP=144;HM2;HM3     GT:GQ:DP        0/1:100:29      0/1:69:24       0/1:100:93
599 17      69252454        rs2683179       A       G       .       PASS    AA=G;DP=136     GT:GQ:DP        0/1:100:29      0/1:72:29       0/1:100:75
600 11      40329821        rs1303849       A       G       .       PASS    AA=A;DP=101     GT:GQ:DP        0/1:100:29      0/1:73:19       0/1:100:52
601 6       14783669        rs59779763      C       T       .       PASS    AA=C;DP=132     GT:GQ:DP        0/1:100:29      0/1:76:25       0/1:100:78
602 6       162711724       rs12205958      C       G       .       PASS    AA=G;DP=140     GT:GQ:DP        0/1:100:29      0/1:76:30       0/1:100:73
603 11      105446968       rs6591150       A       T       .       PASS    AA=T;DP=108     GT:GQ:DP        0/1:100:29      0/1:81:17       0/1:100:65
604 1       159496275       rs4078109       A       G       .       PASS    AA=A;DP=150;HM2;HM3     GT:GQ:DP        0/1:100:29      0/1:81:32       0/1:100:47
605 10      114460494       rs7919503       A       G       .       PASS    AA=A;DP=128     GT:GQ:DP        0/1:100:29      0/1:85:22       0/1:100:81
606 11      115962860       rs10790152      A       G       .       PASS    AA=a;DP=140     GT:GQ:DP        0/1:100:29      0/1:85:22       0/1:100:93
607 8       138226540       rs11778090      A       C       .       PASS    AA=C;DP=127     GT:GQ:DP        0/1:100:29      0/1:85:25       0/1:100:72
608 1       34173302        rs10799011      A       G       .       PASS    AA=G;DP=136     GT:GQ:DP        0/1:100:29      0/1:86:19       0/1:100:89
609 14      94045336        rs17094914      C       G       .       PASS    AA=C;DP=107     GT:GQ:DP        0/1:100:29      0/1:88:15       0/1:100:63
610 14      106226318       rs35923687      A       G       .       PASS    AA=a;DP=103     GT:GQ:DP        0/1:100:29      0/1:88:23       0/1:100:51
611 2       80233864        rs11678577      C       G       .       PASS    AA=C;DP=110     GT:GQ:DP        0/1:100:29      0/1:88:24       0/1:100:57
612 16      60610561        rs968627        A       G       .       PASS    AA=G;DP=119     GT:GQ:DP        0/1:100:29      0/1:92:17       0/1:100:73
613 8       20490621        rs60455912      A       T       .       PASS    AA=T;DP=117     GT:GQ:DP        0/1:100:29      0/1:92:25       0/1:100:65
614 8       105286277       rs2441909       G       T       .       PASS    AA=G;DP=128     GT:GQ:DP        0/1:100:29      0/1:94:24       0/1:100:79
615 14      43255781        .       A       C       .       PASS    AA=A;DP=100     GT:GQ:DP        0/1:100:29      0/1:95:16       0/1:100:55
616 7       32426749        rs10269253      C       T       .       PASS    AA=C;DP=122     GT:GQ:DP        0/1:100:29      0/1:95:22       0/1:100:74
617 14      100915596       rs1953237       A       T       .       PASS    AA=A;DP=84      GT:GQ:DP        0/1:100:29      0/1:96:16       0/1:100:31
618 1       57106347        rs601662        A       G       .       PASS    AA=G;DP=106;HM2;HM3     GT:GQ:DP        0/1:100:29      0/1:96:20       0/1:100:58
619 3       142838386       rs9824515       A       G       .       PASS    AA=A;DP=131     GT:GQ:DP        0/1:100:29      0/1:97:18       0/1:100:84
620 4       116207336       rs531435        A       T       .       PASS    AA=A;DP=150     GT:GQ:DP        0/1:100:29      0/1:97:30       0/1:100:44
621 7       98570668        rs10271953      A       G       .       PASS    AA=A;DP=97      GT:GQ:DP        0/1:100:30      0/1:100:19      0/1:100:34
622 1       158702829       rs2118423       C       T       .       PASS    AA=C;DP=118     GT:GQ:DP        0/1:100:30      0/1:100:21      0/1:100:68
623 12      66598513        rs2192783       A       T       .       PASS    AA=T;DP=138     GT:GQ:DP        0/1:100:30      0/1:100:21      0/1:100:82
624 6       95069329        .       A       T       .       PASS    AA=T;DP=116     GT:GQ:DP        0/1:100:30      0/1:100:22      0/1:100:65
625 9       131948609       rs35587836      C       T       .       PASS    AA=C;DP=132     GT:GQ:DP        0/1:100:30      0/1:100:23      0/1:100:37
626 4       78457124        rs4859801       A       G       .       PASS    AA=a;DP=136     GT:GQ:DP        0/1:100:30      0/1:100:23      0/1:100:41
627 9       23683918        rs1329027       A       G       .       PASS    AA=A;DP=101     GT:GQ:DP        0/1:100:30      0/1:100:23      0/1:100:48
628 5       50500877        rs4392588       A       G       .       PASS    AA=A;DP=115     GT:GQ:DP        0/1:100:30      0/1:100:23      0/1:100:61
629 7       158798340       .       C       T       .       PASS    AA=.;DP=120     GT:GQ:DP        0/1:100:30      0/1:100:23      0/1:100:68
630 2       33868333        rs11892198      A       G       .       PASS    AA=G;DP=126     GT:GQ:DP        0/1:100:30      0/1:100:23      0/1:100:74
631 7       139946385       .       C       G       .       PASS    AA=c;DP=129     GT:GQ:DP        0/1:100:30      0/1:100:23      0/1:100:76
632 7       36486176        rs6954205       C       T       .       PASS    AA=T;DP=124     GT:GQ:DP        0/1:100:30      0/1:100:24      0/1:100:72
633 12      92643179        .       A       G       .       PASS    AA=A;DP=122     GT:GQ:DP        0/1:100:30      0/1:100:25      0/1:100:65
634 8       53538312        rs3906806       A       G       .       PASS    AA=A;DP=144     GT:GQ:DP        0/1:100:30      0/1:100:25      0/1:100:68
635 10      29378073        .       C       T       .       PASS    AA=C;DP=120     GT:GQ:DP        0/1:100:30      0/1:100:25      0/1:100:69
636 16      5537475 rs1486429       A       G       .       PASS    AA=A;DP=124     GT:GQ:DP        0/1:100:30      0/1:100:26      0/1:100:67
637 6       138052844       rs12525643      A       G       .       PASS    AA=A;DP=122     GT:GQ:DP        0/1:100:30      0/1:100:26      0/1:100:67
638 9       134352781       rs471186        C       T       .       PASS    AA=T;DP=125     GT:GQ:DP        0/1:100:30      0/1:100:26      0/1:100:67
639 20      10947320        rs60840161      C       T       .       PASS    AA=c;DP=103     GT:GQ:DP        0/1:100:30      0/1:100:27      0/1:100:35
640 7       131407567       rs34036124      A       G       .       PASS    AA=A;DP=133     GT:GQ:DP        0/1:100:30      0/1:100:27      0/1:100:37
641 6       138007580       rs4896289       C       G       .       PASS    AA=C;DP=115     GT:GQ:DP        0/1:100:30      0/1:100:27      0/1:100:59
642 7       97577854        rs10499940      A       G       .       PASS    AA=A;DP=126     GT:GQ:DP        0/1:100:30      0/1:100:27      0/1:100:69
643 13      77534792        rs2775139       C       T       .       PASS    AA=C;DP=129     GT:GQ:DP        0/1:100:30      0/1:100:27      0/1:100:74
644 7       111237017       rs2188797       C       T       .       PASS    AA=T;DP=119     GT:GQ:DP        0/1:100:30      0/1:100:28      0/1:100:59
645 20      24458675        rs62215287      A       C       .       PASS    AA=N;DP=115     GT:GQ:DP        0/1:100:30      0/1:100:29      0/1:100:60
646 3       90178855        .       C       G       .       PASS    AA=G;DP=139     GT:GQ:DP        0/1:100:30      0/1:100:29      0/1:100:80
647 3       6017772 .       A       G       .       PASS    AA=G;DP=126     GT:GQ:DP        0/1:100:30      0/1:100:30      0/1:100:65
648 6       124370716       rs1104940       A       G       .       PASS    AA=A;DP=119     GT:GQ:DP        0/1:100:30      0/1:100:31      0/1:100:59
649 11      21426069        .       A       T       .       PASS    AA=A;DP=135     GT:GQ:DP        0/1:100:30      0/1:100:32      0/1:100:74
650 11      113308144       rs1176745       C       T       .       PASS    AA=C;DP=139     GT:GQ:DP        0/1:100:30      0/1:100:32      0/1:100:77
651 9       28657293        rs13291753      A       T       .       PASS    AA=A;DP=141     GT:GQ:DP        0/1:100:30      0/1:100:33      0/1:100:29
652 1       64527392        rs17126280      G       T       .       PASS    AA=G;DP=138     GT:GQ:DP        0/1:100:30      0/1:100:34      0/1:100:76
653 9       125300266       rs10986029      C       G       .       PASS    AA=C;DP=133     GT:GQ:DP        0/1:100:30      0/1:100:37      0/1:100:68
654 2       119247562       .       A       G       .       PASS    AA=G;DP=116     GT:GQ:DP        0/1:100:30      0/1:43:17       0/1:100:70
655 11      86065299        rs10792873      A       G       .       PASS    AA=A;DP=155     GT:GQ:DP        0/1:100:30      0/1:49:28       0/1:100:57
656 1       3685915 rs10909790      C       T       .       PASS    AA=C;DP=115     GT:GQ:DP        0/1:100:30      0/1:53:15       0/1:100:52
657 1       45860466        rs3014241       A       G       .       PASS    AA=G;DP=137;HM2;HM3     GT:GQ:DP        0/1:100:30      0/1:61:20       0/1:100:86
658 14      30217249        rs10139154      C       T       .       PASS    AA=T;DP=104     GT:GQ:DP        0/1:100:30      0/1:63:13       0/1:100:58
659 3       118094521       rs9682531       G       T       .       PASS    AA=T;DP=119     GT:GQ:DP        0/1:100:30      0/1:65:19       0/1:100:62
660 5       112603823       rs12188069      A       G       .       PASS    AA=G;DP=100     GT:GQ:DP        0/1:100:30      0/1:67:12       0/1:100:59
661 7       26427041        rs1919937       C       G       .       PASS    AA=C;DP=122     GT:GQ:DP        0/1:100:30      0/1:68:24       0/1:100:69
662 19      21532928        rs1401927       C       T       .       PASS    AA=c;DP=120     GT:GQ:DP        0/1:100:30      0/1:69:23       0/1:100:68
663 17      1887798 rs12451788      A       G       .       PASS    AA=N;DP=148     GT:GQ:DP        0/1:100:30      0/1:70:29       0/1:100:52
664 9       116202074       rs10759693      C       T       .       PASS    AA=T;DP=137     GT:GQ:DP        0/1:100:30      0/1:79:20       0/1:100:89
665 9       1554650 .       A       G       .       PASS    AA=G;DP=98      GT:GQ:DP        0/1:100:30      0/1:80:16       0/1:100:53
666 6       25058578        rs7759489       C       T       .       PASS    AA=c;DP=121     GT:GQ:DP        0/1:100:30      0/1:80:16       0/1:100:77
667 4       68595851        rs6817194       A       C       .       PASS    AA=A;DP=122     GT:GQ:DP        0/1:100:30      0/1:80:22       0/1:100:29
668 5       112749984       rs12523255      C       T       .       PASS    AA=C;DP=121     GT:GQ:DP        0/1:100:30      0/1:81:15       0/1:100:76
669 16      83469773        rs903188        C       T       .       PASS    AA=T;DP=121     GT:GQ:DP        0/1:100:30      0/1:82:24       0/1:100:66
670 18      41925238        rs1800639       G       T       .       PASS    AA=G;DP=145     GT:GQ:DP        0/1:100:30      0/1:82:26       0/1:100:44
671 1       46551961        .       A       T       .       PASS    AA=T;DP=112     GT:GQ:DP        0/1:100:30      0/1:82:26       0/1:100:58
672 13      75422378        rs1934824       A       G       .       PASS    AA=A;DP=143     GT:GQ:DP        0/1:100:30      0/1:82:31       0/1:100:83
673 3       116915785       rs283364        A       G       .       PASS    AA=G;DP=116     GT:GQ:DP        0/1:100:30      0/1:86:27       0/1:100:61
674 2       155030329       rs707104        A       C       .       PASS    AA=A;DP=144     GT:GQ:DP        0/1:100:30      0/1:86:28       0/1:100:86
675 7       109419154       rs10046505      C       T       .       PASS    AA=T;DP=122     GT:GQ:DP        0/1:100:30      0/1:88:27       0/1:100:66
676 10      59934482        rs2033150       C       T       .       PASS    AA=C;DP=119     GT:GQ:DP        0/1:100:30      0/1:90:27       0/1:100:59
677 4       25317328        rs13107598      A       G       .       PASS    AA=A;DP=95      GT:GQ:DP        0/1:100:30      0/1:93:17       0/1:100:49
678 18      45628481        rs591173        C       T       .       PASS    AA=T;DP=149     GT:GQ:DP        0/1:100:30      0/1:94:27       0/1:100:93
679 5       60971948        rs10514913      C       T       .       PASS    AA=T;DP=111     GT:GQ:DP        0/1:100:30      0/1:96:18       0/1:100:63
680 8       138035595       rs1499460       A       G       .       PASS    AA=G;DP=113     GT:GQ:DP        0/1:100:30      0/1:98:23       0/1:100:58
681 18      20205740        rs581885        A       G       .       PASS    AA=G;DP=124     GT:GQ:DP        0/1:100:30      0/1:99:17       0/1:100:80
682 1       20777795        rs7554360       C       T       .       PASS    AA=C;DP=128;HM2;HM3     GT:GQ:DP        0/1:100:31      0/1:100:17      0/1:100:82
683 2       72236097        rs6738942       A       G       .       PASS    AA=N;DP=117     GT:GQ:DP        0/1:100:31      0/1:100:18      0/1:100:69
684 4       174287355       rs28735865      C       T       .       PASS    AA=C;DP=114     GT:GQ:DP        0/1:100:31      0/1:100:20      0/1:100:62
685 3       58345217        rs6445975       G       T       .       PASS    AA=T;DP=127     GT:GQ:DP        0/1:100:31      0/1:100:20      0/1:100:76
686 12      41078234        .       C       G       .       PASS    AA=C;DP=110     GT:GQ:DP        0/1:100:31      0/1:100:21      0/1:100:57
687 18      1208635 rs1812571       A       C       .       PASS    AA=A;DP=109     GT:GQ:DP        0/1:100:31      0/1:100:22      0/1:100:52
688 15      49443612        rs60420999      A       T       .       PASS    AA=T;DP=107     GT:GQ:DP        0/1:100:31      0/1:100:22      0/1:100:56
689 12      116681563       rs10744902      A       G       .       PASS    AA=A;DP=124     GT:GQ:DP        0/1:100:31      0/1:100:22      0/1:100:75
690 5       67245739        rs13172285      G       T       .       PASS    AA=G;DP=139     GT:GQ:DP        0/1:100:31      0/1:100:22      0/1:100:84
691 4       93045233        rs7675570       A       G       .       PASS    AA=G;DP=118     GT:GQ:DP        0/1:100:31      0/1:100:23      0/1:100:63
692 12      123885408       .       C       T       .       PASS    AA=C;DP=128     GT:GQ:DP        0/1:100:31      0/1:100:23      0/1:100:77
693 3       195561328       .       C       T       .       PASS    AA=C;DP=112     GT:GQ:DP        0/1:100:31      0/1:100:24      0/1:100:58
694 13      62759421        rs60070486      C       T       .       PASS    AA=c;DP=119     GT:GQ:DP        0/1:100:31      0/1:100:24      0/1:100:66
695 4       14355777        rs6449074       C       T       .       PASS    AA=C;DP=120     GT:GQ:DP        0/1:100:31      0/1:100:24      0/1:100:67
696 6       142483143       rs2842761       C       T       .       PASS    AA=T;DP=139     GT:GQ:DP        0/1:100:31      0/1:100:24      0/1:100:68
697 7       68380429        rs1568630       C       T       .       PASS    AA=T;DP=143     GT:GQ:DP        0/1:100:31      0/1:100:25      0/1:100:91
698 10      43481149        .       A       G       .       PASS    AA=A;DP=102     GT:GQ:DP        0/1:100:31      0/1:100:26      0/1:100:46
699 10      13859398        rs11258596      A       G       .       PASS    AA=G;DP=133     GT:GQ:DP        0/1:100:31      0/1:100:26      0/1:100:76
700 10      86694671        rs10887406      C       T       .       PASS    AA=C;DP=115     GT:GQ:DP        0/1:100:31      0/1:100:27      0/1:100:49
701 6       80518169        rs9443701       A       G       .       PASS    AA=G;DP=116     GT:GQ:DP        0/1:100:31      0/1:100:28      0/1:100:58
702 20      52447406        rs1923118       A       G       .       PASS    AA=A;DP=138     GT:GQ:DP        0/1:100:31      0/1:100:28      0/1:100:78
703 3       133080508       rs9289405       A       G       .       PASS    AA=G;DP=139     GT:GQ:DP        0/1:100:31      0/1:100:28      0/1:100:78
704 3       170337296       rs35601116      A       T       .       PASS    AA=A;DP=110     GT:GQ:DP        0/1:100:31      0/1:100:30      0/1:100:46
705 16      26568164        .       A       T       .       PASS    AA=T;DP=138     GT:GQ:DP        0/1:100:31      0/1:100:30      0/1:100:77
706 8       62855544        rs1908457       C       G       .       PASS    AA=C;DP=160     GT:GQ:DP        0/1:100:31      0/1:100:31      0/1:100:53
707 7       92604287        .       A       G       .       PASS    AA=A;DP=139     GT:GQ:DP        0/1:100:31      0/1:100:32      0/1:100:71
708 11      68064334        .       A       C       .       PASS    AA=-;DP=139     GT:GQ:DP        0/1:100:31      0/1:100:33      0/1:100:76
709 2       68732960        rs4467308       A       G       .       PASS    AA=G;DP=147     GT:GQ:DP        0/1:100:31      0/1:100:35      0/1:100:81
710 1       58678090        rs706432        C       G       .       PASS    AA=G;DP=170     GT:GQ:DP        0/1:100:31      0/1:100:42      0/1:100:52
711 2       151400417       rs10084284      G       T       .       PASS    AA=G;DP=134     GT:GQ:DP        0/1:100:31      0/1:100:42      0/1:100:61
712 5       31007717        rs1276145       A       G       .       PASS    AA=A;DP=129     GT:GQ:DP        0/1:100:31      0/1:12:18       0/1:100:81
713 19      56007784        .       C       T       .       PASS    AA=C;DP=116     GT:GQ:DP        0/1:100:31      0/1:19:18       0/1:100:66
714 10      105227189       rs12263619      C       T       .       PASS    AA=C;DP=120     GT:GQ:DP        0/1:100:31      0/1:25:18       0/1:100:71
715 17      1033297 .       G       T       .       PASS    AA=G;DP=116     GT:GQ:DP        0/1:100:31      0/1:31:20       0/1:100:65
716 5       115480930       rs4460169       C       T       .       PASS    AA=T;DP=116     GT:GQ:DP        0/1:100:31      0/1:34:22       0/1:100:62
717 X       2431076 rs4379602       A       T       .       PASS    AA=.;DP=95      GT:GQ:DP        0/1:100:31      0/1:39:21       0/1:100:38
718 3       111714801       rs9846566       C       T       .       PASS    AA=C;DP=118     GT:GQ:DP        0/1:100:31      0/1:40:17       0/1:100:72
719 3       21325243        rs2118119       C       T       .       PASS    AA=C;DP=117     GT:GQ:DP        0/1:100:31      0/1:47:20       0/1:100:67
720 4       19063014        rs10034324      A       G       .       PASS    AA=G;DP=99      GT:GQ:DP        0/1:100:31      0/1:51:20       0/1:100:48
721 13      69568108        rs9572369       C       T       .       PASS    AA=N;DP=104     GT:GQ:DP        0/1:100:31      0/1:53:15       0/1:100:55
722 12      2385405 rs2159059       C       G       .       PASS    AA=C;DP=109     GT:GQ:DP        0/1:100:31      0/1:53:24       0/1:100:54
723 11      124738350       .       C       T       .       PASS    AA=T;DP=109     GT:GQ:DP        0/1:100:31      0/1:59:18       0/1:100:48
724 16      1262133 rs9923479       C       G       .       PASS    AA=G;DP=120     GT:GQ:DP        0/1:100:31      0/1:60:16       0/1:100:74
725 3       104778074       rs9853928       C       T       .       PASS    AA=N;DP=107     GT:GQ:DP        0/1:100:31      0/1:66:22       0/1:100:54
726 18      30627470        rs1480439       C       G       .       PASS    AA=C;DP=115     GT:GQ:DP        0/1:100:31      0/1:68:23       0/1:100:58
727 17      32337767        rs11659128      C       T       .       PASS    AA=C;DP=106     GT:GQ:DP        0/1:100:31      0/1:71:19       0/1:100:43
728 22      32914092        rs4820144       A       T       .       PASS    AA=A;DP=132     GT:GQ:DP        0/1:100:31      0/1:71:25       0/1:100:79
729 4       767597  rs7655941       A       G       .       PASS    AA=G;DP=119     GT:GQ:DP        0/1:100:31      0/1:75:16       0/1:100:70
730 12      121272177       rs60425908      A       G       .       PASS    AA=A;DP=131     GT:GQ:DP        0/1:100:31      0/1:75:24       0/1:100:76
731 9       15744631        rs10810440      A       G       .       PASS    AA=A;DP=122     GT:GQ:DP        0/1:100:31      0/1:81:29       0/1:100:63
732 6       46482485        .       A       G       .       PASS    AA=A;DP=118     GT:GQ:DP        0/1:100:31      0/1:84:20       0/1:100:67
733 10      3045734 rs7898870       C       T       .       PASS    AA=c;DP=147     GT:GQ:DP        0/1:100:31      0/1:84:23       0/1:100:47
734 16      85419240        .       A       G       .       PASS    AA=A;DP=131     GT:GQ:DP        0/1:100:31      0/1:85:28       0/1:100:70
735 5       79972555        rs966762        A       T       .       PASS    AA=A;DP=109     GT:GQ:DP        0/1:100:31      0/1:87:19       0/1:100:61
736 21      19805361        rs8128540       C       T       .       PASS    AA=c;DP=104     GT:GQ:DP        0/1:100:31      0/1:88:13       0/1:100:60
737 8       121438612       rs11782639      A       G       .       PASS    AA=A;DP=121     GT:GQ:DP        0/1:100:31      0/1:91:16       0/1:100:73
738 4       58956677        rs13105750      C       T       .       PASS    AA=C;DP=119     GT:GQ:DP        0/1:100:31      0/1:93:16       0/1:100:70
739 7       93377426        rs180270        A       T       .       PASS    AA=A;DP=116     GT:GQ:DP        0/1:100:31      0/1:95:16       0/1:100:71
740 3       56004744        rs2125244       A       T       .       PASS    AA=A;DP=105     GT:GQ:DP        0/1:100:31      0/1:95:22       0/1:100:54
741 5       175134670       rs11749986      A       G       .       PASS    AA=G;DP=124     GT:GQ:DP        0/1:100:31      0/1:95:22       0/1:100:71
742 3       89198193        rs58958639      C       T       .       PASS    AA=T;DP=114     GT:GQ:DP        0/1:100:31      0/1:96:22       0/1:100:63
743 2       55478968        rs2867179       C       T       .       PASS    AA=C;DP=96      GT:GQ:DP        0/1:100:32      0/1:100:16      0/1:100:48
744 16      5731248 rs62014079      A       G       .       PASS    AA=A;DP=106     GT:GQ:DP        0/1:100:32      0/1:100:18      0/1:100:58
745 8       125293612       .       C       T       .       PASS    AA=C;DP=130     GT:GQ:DP        0/1:100:32      0/1:100:21      0/1:100:78
746 8       80742605        rs60352938      A       C       .       PASS    AA=A;DP=116     GT:GQ:DP        0/1:100:32      0/1:100:22      0/1:100:63
747 7       102510323       rs11981558      A       G       .       PASS    AA=G;DP=100     GT:GQ:DP        0/1:100:32      0/1:100:23      0/1:100:33
748 1       152855856       rs9427104       C       T       .       PASS    AA=C;DP=125;HM2 GT:GQ:DP        0/1:100:32      0/1:100:23      0/1:100:72
749 2       182359979       rs10179363      A       G       .       PASS    AA=G;DP=154     GT:GQ:DP        0/1:100:32      0/1:100:24      0/1:100:57
750 3       73107299        rs1108154       A       T       .       PASS    AA=A;DP=119     GT:GQ:DP        0/1:100:32      0/1:100:24      0/1:100:65
751 5       142396198       rs11956059      C       T       .       PASS    AA=C;DP=122     GT:GQ:DP        0/1:100:32      0/1:100:24      0/1:100:68
752 9       71000512        rs17062237      C       T       .       PASS    AA=c;DP=118     GT:GQ:DP        0/1:100:32      0/1:100:25      0/1:100:48
753 4       139805023       rs6823417       C       T       .       PASS    AA=c;DP=121     GT:GQ:DP        0/1:100:32      0/1:100:25      0/1:100:64
754 20      17439618        rs6080728       C       T       .       PASS    AA=T;DP=121     GT:GQ:DP        0/1:100:32      0/1:100:25      0/1:100:66
755 13      112687134       rs1320523       A       G       .       PASS    AA=G;DP=124     GT:GQ:DP        0/1:100:32      0/1:100:25      0/1:100:67
756 16      20293275        .       C       G       .       PASS    AA=c;DP=123     GT:GQ:DP        0/1:100:32      0/1:100:25      0/1:100:67
757 2       191240982       rs2159819       C       G       .       PASS    AA=G;DP=110     GT:GQ:DP        0/1:100:32      0/1:100:26      0/1:100:54
758 10      1648534 rs11250669      C       T       .       PASS    AA=C;DP=116     GT:GQ:DP        0/1:100:32      0/1:100:26      0/1:100:58
759 5       118473498       .       C       G       .       PASS    AA=C;DP=117     GT:GQ:DP        0/1:100:32      0/1:100:26      0/1:100:60
760 13      39353021        rs4943708       C       T       .       PASS    AA=C;DP=120     GT:GQ:DP        0/1:100:32      0/1:100:26      0/1:100:61
761 3       192483128       rs10937469      A       G       .       PASS    AA=A;DP=131     GT:GQ:DP        0/1:100:32      0/1:100:27      0/1:100:70
762 6       57467918        .       C       T       .       PASS    AA=c;DP=148     GT:GQ:DP        0/1:100:32      0/1:100:27      0/1:100:75
763 4       78422819        rs11732260      A       G       .       PASS    AA=N;DP=163     GT:GQ:DP        0/1:100:32      0/1:100:29      0/1:100:46
764 7       96305513        rs12535698      C       T       .       PASS    AA=C;DP=137     GT:GQ:DP        0/1:100:32      0/1:100:29      0/1:100:78
765 10      80155049        rs9663663       C       T       .       PASS    AA=c;DP=138     GT:GQ:DP        0/1:100:32      0/1:100:31      0/1:100:74
766 9       7091417 rs12343768      C       T       .       PASS    AA=C;DP=153     GT:GQ:DP        0/1:100:32      0/1:100:32      0/1:100:40
767 5       132398865       rs7728724       G       T       .       PASS    AA=G;DP=150     GT:GQ:DP        0/1:100:32      0/1:100:34      0/1:100:44
768 12      48121998        rs11169017      A       G       .       PASS    AA=a;DP=133     GT:GQ:DP        0/1:100:32      0/1:100:37      0/1:100:64
769 6       99717657        rs7773562       C       G       .       PASS    AA=C;DP=164     GT:GQ:DP        0/1:100:32      0/1:100:37      0/1:100:93
770 19      592893  rs11085150      A       T       .       PASS    AA=A;DP=96      GT:GQ:DP        0/1:100:32      0/1:16:5        0/1:100:58
771 2       12139730        rs12465663      C       G       .       PASS    AA=G;DP=111     GT:GQ:DP        0/1:100:32      0/1:28:18       0/1:100:61
772 10      72371050        rs1466575       C       T       .       PASS    AA=T;DP=116     GT:GQ:DP        0/1:100:32      0/1:37:16       0/1:100:69
773 3       188428306       .       A       G       .       PASS    AA=A;DP=97      GT:GQ:DP        0/1:100:32      0/1:54:22       0/1:100:32
774 19      56498047        rs59736370      C       T       .       PASS    AA=C;DP=98      GT:GQ:DP        0/1:100:32      0/1:55:17       0/1:100:45
775 9       36870256        rs10119448      C       T       .       PASS    AA=C;DP=119     GT:GQ:DP        0/1:100:32      0/1:60:14       0/1:100:71
776 20      15432778        .       A       G       .       PASS    AA=G;DP=96      GT:GQ:DP        0/1:100:32      0/1:63:14       0/1:100:50
777 12      40260526        rs55792075      C       T       .       PASS    AA=C;DP=124     GT:GQ:DP        0/1:100:32      0/1:64:15       0/1:100:76
778 2       125035019       rs6720106       A       C       .       PASS    AA=a;DP=113     GT:GQ:DP        0/1:100:32      0/1:65:14       0/1:100:68
779 14      102687562       rs4906279       A       C       .       PASS    AA=C;DP=121     GT:GQ:DP        0/1:100:32      0/1:65:18       0/1:100:70
780 14      52987035        rs1954302       A       T       .       PASS    AA=T;DP=118     GT:GQ:DP        0/1:100:32      0/1:68:22       0/1:100:67
781 10      8546235 rs7907707       C       T       .       PASS    AA=T;DP=117     GT:GQ:DP        0/1:100:32      0/1:74:26       0/1:100:60
782 4       55602147        rs6820371       C       T       .       PASS    AA=C;DP=118     GT:GQ:DP        0/1:100:32      0/1:77:24       0/1:100:65
783 13      42420017        rs58019346      G       T       .       PASS    AA=G;DP=139     GT:GQ:DP        0/1:100:32      0/1:77:25       0/1:100:85
784 8       2922991 rs11993468      C       T       .       PASS    AA=T;DP=122     GT:GQ:DP        0/1:100:32      0/1:79:20       0/1:100:69
785 19      16704379        rs12975018      C       G       .       PASS    AA=G;DP=114     GT:GQ:DP        0/1:100:32      0/1:79:26       0/1:100:56
786 8       24420370        .       C       T       .       PASS    AA=C;DP=112     GT:GQ:DP        0/1:100:32      0/1:81:21       0/1:100:63
787 10      75371861        rs4746158       A       G       .       PASS    AA=a;DP=120     GT:GQ:DP        0/1:100:32      0/1:83:22       0/1:100:67
788 9       97777358        rs4743436       C       T       .       PASS    AA=C;DP=153     GT:GQ:DP        0/1:100:32      0/1:87:34       0/1:100:46
789 1       155463246       rs7549223       C       T       .       PASS    AA=T;DP=130     GT:GQ:DP        0/1:100:32      0/1:88:20       0/1:100:74
790 16      48315591        rs8050003       A       G       .       PASS    AA=G;DP=110     GT:GQ:DP        0/1:100:32      0/1:89:20       0/1:100:60
791 3       58963188        rs9817881       C       T       .       PASS    AA=T;DP=118     GT:GQ:DP        0/1:100:32      0/1:89:29       0/1:100:56
792 12      39881547        rs1431106       C       T       .       PASS    AA=T;DP=124     GT:GQ:DP        0/1:100:32      0/1:90:20       0/1:100:71
793 13      47876146        rs198609        A       G       .       PASS    AA=A;DP=128     GT:GQ:DP        0/1:100:32      0/1:93:20       0/1:100:76
794 5       673486  rs16900931      G       T       .       PASS    AA=G;DP=143     GT:GQ:DP        0/1:100:32      0/1:95:24       0/1:100:89
795 2       209895733       rs7576085       C       T       .       PASS    AA=C;DP=117     GT:GQ:DP        0/1:100:32      0/1:99:24       0/1:100:61
796 21      19567443        rs2825474       A       C       .       PASS    AA=C;DP=120     GT:GQ:DP        0/1:100:32      0/1:99:26       0/1:100:62
797 12      113414333       rs60147285      A       G       .       PASS    AA=A;DP=123     GT:GQ:DP        0/1:100:33      0/1:100:19      0/1:100:74
798 16      5797738 rs17138676      C       G       .       PASS    AA=C;DP=146     GT:GQ:DP        0/1:100:33      0/1:100:20      0/1:100:91
799 1       189156800       rs11811419      A       T       .       PASS    AA=A;DP=120;HM2 GT:GQ:DP        0/1:100:33      0/1:100:21      0/1:100:65
800 3       181224144       rs6800787       C       T       .       PASS    AA=C;DP=127     GT:GQ:DP        0/1:100:33      0/1:100:21      0/1:100:76
801 3       107806340       .       A       G       .       PASS    AA=A;DP=136     GT:GQ:DP        0/1:100:33      0/1:100:22      0/1:100:78
802 5       89866212        rs679568        A       T       .       PASS    AA=T;DP=115     GT:GQ:DP        0/1:100:33      0/1:100:23      0/1:100:61
803 16      27152587        rs11641348      G       T       .       PASS    AA=T;DP=123     GT:GQ:DP        0/1:100:33      0/1:100:23      0/1:100:67
804 6       52128038        rs6917607       C       T       .       PASS    AA=C;DP=124     GT:GQ:DP        0/1:100:33      0/1:100:24      0/1:100:67
805 8       129519407       rs4733610       G       T       .       PASS    AA=G;DP=103     GT:GQ:DP        0/1:100:33      0/1:100:25      0/1:100:45
806 4       186256723       rs13120942      A       T       .       PASS    AA=A;DP=147     GT:GQ:DP        0/1:100:33      0/1:100:25      0/1:100:80
807 11      76035492        rs4944113       A       T       .       PASS    AA=T;DP=124     GT:GQ:DP        0/1:100:33      0/1:100:26      0/1:100:66
808 14      80960811        rs58856082      C       T       .       PASS    AA=C;DP=136     GT:GQ:DP        0/1:100:33      0/1:100:26      0/1:100:74
809 18      61674946        rs4468726       C       T       .       PASS    AA=C;DP=142     GT:GQ:DP        0/1:100:33      0/1:100:26      0/1:100:82
810 3       193225330       rs11927557      A       T       .       PASS    AA=A;DP=149     GT:GQ:DP        0/1:100:33      0/1:100:27      0/1:100:46
811 18      1092114 rs7242655       C       T       .       PASS    AA=C;DP=128     GT:GQ:DP        0/1:100:33      0/1:100:27      0/1:100:69
812 2       173072631       rs5015856       C       T       .       PASS    AA=T;DP=134     GT:GQ:DP        0/1:100:33      0/1:100:27      0/1:100:73
813 16      7799445 rs9923884       A       G       .       PASS    AA=G;DP=123     GT:GQ:DP        0/1:100:33      0/1:100:28      0/1:100:62
814 1       160198162       rs2499850       G       T       .       PASS    AA=T;DP=133     GT:GQ:DP        0/1:100:33      0/1:100:28      0/1:100:72
815 5       41030966        .       C       T       .       PASS    AA=T;DP=137     GT:GQ:DP        0/1:100:33      0/1:100:28      0/1:100:75
816 17      42181223        rs9896243       C       G       .       PASS    AA=G;DP=129     GT:GQ:DP        0/1:100:33      0/1:100:29      0/1:100:65
817 20      48418018        rs58843788      C       T       .       PASS    AA=C;DP=131     GT:GQ:DP        0/1:100:33      0/1:100:30      0/1:100:70
818 12      127188580       rs7299858       A       G       .       PASS    AA=A;DP=147     GT:GQ:DP        0/1:100:33      0/1:100:30      0/1:100:83
819 10      25483065        rs57601269      A       C       .       PASS    AA=A;DP=123     GT:GQ:DP        0/1:100:33      0/1:100:32      0/1:100:58
820 8       73097593        rs10085964      C       T       .       PASS    AA=T;DP=132     GT:GQ:DP        0/1:100:33      0/1:100:32      0/1:100:66
821 5       55750624        rs286017        A       T       .       PASS    AA=A;DP=146     GT:GQ:DP        0/1:100:33      0/1:100:32      0/1:100:75
822 13      108260337       rs196181        A       G       .       PASS    AA=A;DP=156     GT:GQ:DP        0/1:100:33      0/1:100:32      0/1:100:94
823 11      5572987 rs7106976       C       T       .       PASS    AA=T;DP=145     GT:GQ:DP        0/1:100:33      0/1:100:33      0/1:100:79
824 1       84466071        rs589918        A       G       .       PASS    AA=A;DP=137     GT:GQ:DP        0/1:100:33      0/1:100:38      0/1:100:66
825 11      45243538        rs11604409      C       G       .       PASS    AA=C;DP=111     GT:GQ:DP        0/1:100:33      0/1:33:17       0/1:100:60
826 8       11462514        rs13280813      G       T       .       PASS    AA=G;DP=122     GT:GQ:DP        0/1:100:33      0/1:35:9        0/1:100:67
827 10      3795712 rs10795072      A       G       .       PASS    AA=G;DP=143     GT:GQ:DP        0/1:100:33      0/1:36:18       0/1:100:43
828 13      47297962        rs4609732       C       T       .       PASS    AA=C;DP=131     GT:GQ:DP        0/1:100:33      0/1:37:21       0/1:100:79
829 10      30227739        rs2989421       C       T       .       PASS    AA=C;DP=148     GT:GQ:DP        0/1:100:33      0/1:37:25       0/1:100:81
830 7       98353405        .       G       T       .       PASS    AA=G;DP=123     GT:GQ:DP        0/1:100:33      0/1:38:20       0/1:100:69
831 2       195302677       rs12693740      C       T       .       PASS    AA=C;DP=95      GT:GQ:DP        0/1:100:33      0/1:42:11       0/1:100:39
832 15      55245635        rs59799036      G       T       .       PASS    AA=G;DP=127     GT:GQ:DP        0/1:100:33      0/1:42:18       0/1:100:78
833 1       5712917 .       C       G       .       PASS    AA=G;DP=138     GT:GQ:DP        0/1:100:33      0/1:43:13       0/1:100:45
834 16      6753288 rs8046305       C       T       .       PASS    AA=C;DP=143     GT:GQ:DP        0/1:100:33      0/1:46:23       0/1:100:40
835 15      43233448        rs2458236       C       T       .       PASS    AA=T;DP=133     GT:GQ:DP        0/1:100:33      0/1:48:18       0/1:100:46
836 22      19287343        rs60128632      C       T       .       PASS    AA=t;DP=113     GT:GQ:DP        0/1:100:33      0/1:49:14       0/1:100:68
837 8       139711509       rs4301456       A       C       .       PASS    AA=A;DP=124     GT:GQ:DP        0/1:100:33      0/1:49:23       0/1:100:67
838 17      8947763 rs4791784       A       G       .       PASS    AA=A;DP=155     GT:GQ:DP        0/1:100:33      0/1:49:26       0/1:100:54
839 8       140070695       rs6982999       C       G       .       PASS    AA=C;DP=121     GT:GQ:DP        0/1:100:33      0/1:54:20       0/1:100:69
840 10      100812046       rs1970535       A       C       .       PASS    AA=A;DP=102     GT:GQ:DP        0/1:100:33      0/1:56:13       0/1:100:55
841 2       109289550       rs6542812       C       T       .       PASS    AA=T;DP=104     GT:GQ:DP        0/1:100:33      0/1:62:14       0/1:100:54
842 9       91769529        rs10993454      A       G       .       PASS    AA=N;DP=122     GT:GQ:DP        0/1:100:33      0/1:62:14       0/1:100:78
843 13      102379615       rs701543        C       T       .       PASS    AA=T;DP=123     GT:GQ:DP        0/1:100:33      0/1:69:20       0/1:100:70
844 21      25950828        rs963103        C       T       .       PASS    AA=T;DP=116     GT:GQ:DP        0/1:100:33      0/1:69:22       0/1:100:62
845 10      80260617        rs1347960       C       T       .       PASS    AA=C;DP=130     GT:GQ:DP        0/1:100:33      0/1:70:21       0/1:100:77
846 3       103141616       rs2925323       C       T       .       PASS    AA=C;DP=120     GT:GQ:DP        0/1:100:33      0/1:72:20       0/1:100:62
847 1       61100412        rs7546977       C       T       .       PASS    AA=C;DP=132;HM2;HM3     GT:GQ:DP        0/1:100:33      0/1:77:26       0/1:100:73
848 8       66977541        rs9694490       A       G       .       PASS    AA=G;DP=138     GT:GQ:DP        0/1:100:33      0/1:78:23       0/1:100:86
849 16      75839499        rs13337994      A       G       .       PASS    AA=G;DP=119     GT:GQ:DP        0/1:100:33      0/1:79:20       0/1:100:66
850 1       186188373       rs7534766       C       T       .       PASS    AA=T;DP=138;HM2 GT:GQ:DP        0/1:100:33      0/1:80:24       0/1:100:78
851 16      82095671        rs4782805       C       T       .       PASS    AA=T;DP=134     GT:GQ:DP        0/1:100:33      0/1:82:17       0/1:100:83
852 1       17316137        rs6675839       G       T       .       PASS    AA=G;DP=125     GT:GQ:DP        0/1:100:33      0/1:84:25       0/1:100:66
853 2       151453250       rs57844203      A       G       .       PASS    AA=a;DP=159     GT:GQ:DP        0/1:100:33      0/1:84:32       0/1:100:53
854 20      57621749        rs6128644       C       T       .       PASS    AA=c;DP=125     GT:GQ:DP        0/1:100:33      0/1:85:18       0/1:100:76
855 11      122568292       rs11219059      C       G       .       PASS    AA=C;DP=136     GT:GQ:DP        0/1:100:33      0/1:86:21       0/1:100:84
856 5       113050968       rs10519361      C       T       .       PASS    AA=T;DP=143     GT:GQ:DP        0/1:100:33      0/1:87:27       0/1:100:84
857 1       46320455        rs1768802       A       G       .       PASS    AA=G;DP=105;HM3 GT:GQ:DP        0/1:100:33      0/1:88:19       0/1:100:54
858 4       23580702        rs2324234       G       T       .       PASS    AA=T;DP=142     GT:GQ:DP        0/1:100:33      0/1:88:24       0/1:100:44
859 12      5116420 rs12824083      A       G       .       PASS    AA=A;DP=134     GT:GQ:DP        0/1:100:33      0/1:88:24       0/1:100:77
860 8       59276366        rs11994480      C       T       .       PASS    AA=C;DP=118     GT:GQ:DP        0/1:100:33      0/1:90:30       0/1:100:56
861 1       150405933       rs6700989       A       G       .       PASS    AA=a;DP=144     GT:GQ:DP        0/1:100:33      0/1:90:31       0/1:100:80
862 3       121563543       rs3914498       C       T       .       PASS    AA=C;DP=133     GT:GQ:DP        0/1:100:33      0/1:91:21       0/1:100:79
863 14      73717171        rs2358633       A       G       .       PASS    AA=G;DP=106     GT:GQ:DP        0/1:100:33      0/1:93:19       0/1:100:54
864 7       40700281        rs6462987       C       T       .       PASS    AA=C;DP=111     GT:GQ:DP        0/1:100:33      0/1:93:23       0/1:100:55
865 20      41530574        rs6030891       A       G       .       PASS    AA=A;DP=101     GT:GQ:DP        0/1:100:33      0/1:94:15       0/1:100:53
866 6       83598205        rs176596        A       G       .       PASS    AA=A;DP=145     GT:GQ:DP        0/1:100:33      0/1:98:24       0/1:100:88
867 8       83830388        rs13254663      G       T       .       PASS    AA=G;DP=142     GT:GQ:DP        0/1:100:33      0/1:98:28       0/1:100:80
868 8       135044719       .       C       T       .       PASS    AA=C;DP=103     GT:GQ:DP        0/1:100:34      0/1:100:16      0/1:100:53
869 5       82914926        rs61211969      G       T       .       PASS    AA=T;DP=121     GT:GQ:DP        0/1:100:34      0/1:100:19      0/1:100:72
870 5       15278715        rs6554871       A       G       .       PASS    AA=a;DP=118     GT:GQ:DP        0/1:100:34      0/1:100:20      0/1:100:67
871 7       135623516       rs930008        A       G       .       PASS    AA=A;DP=118     GT:GQ:DP        0/1:100:34      0/1:100:23      0/1:100:60
872 18      12308027        rs4796960       C       G       .       PASS    AA=C;DP=144     GT:GQ:DP        0/1:100:34      0/1:100:23      0/1:100:87
873 12      71363360        rs10879476      A       G       .       PASS    AA=A;DP=115     GT:GQ:DP        0/1:100:34      0/1:100:24      0/1:100:59
874 2       118822334       rs6711687       C       T       .       PASS    AA=C;DP=118     GT:GQ:DP        0/1:100:34      0/1:100:24      0/1:100:62
875 4       79675139        rs12648204      C       G       .       PASS    AA=G;DP=125     GT:GQ:DP        0/1:100:34      0/1:100:24      0/1:100:69
876 1       101904515       rs4908173       A       G       .       PASS    AA=G;DP=117;HM2 GT:GQ:DP        0/1:100:34      0/1:100:25      0/1:100:58
877 12      105417993       rs7137638       G       T       .       PASS    AA=T;DP=135     GT:GQ:DP        0/1:100:34      0/1:100:25      0/1:100:76
878 1       244601437       rs6664600       C       G       .       PASS    AA=C;DP=95      GT:GQ:DP        0/1:100:34      0/1:100:26      0/1:100:25
879 18      22855413        rs7237212       C       T       .       PASS    AA=C;DP=148     GT:GQ:DP        0/1:100:34      0/1:100:26      0/1:100:88
880 1       242239535       rs563745        C       G       .       PASS    AA=G;DP=122;HM2 GT:GQ:DP        0/1:100:34      0/1:100:27      0/1:100:63
881 8       275515  rs61646313      C       G       .       PASS    AA=G;DP=136     GT:GQ:DP        0/1:100:34      0/1:100:27      0/1:100:72
882 10      127952690       rs4412676       C       T       .       PASS    AA=T;DP=139     GT:GQ:DP        0/1:100:34      0/1:100:27      0/1:100:76
883 4       103409301       .       A       G       .       PASS    AA=A;DP=126     GT:GQ:DP        0/1:100:34      0/1:100:29      0/1:100:64
884 12      54215465        rs59920067      C       G       .       PASS    AA=-;DP=152     GT:GQ:DP        0/1:100:34      0/1:100:29      0/1:100:90
885 2       141624325       rs11892722      A       G       .       PASS    AA=A;DP=121     GT:GQ:DP        0/1:100:34      0/1:100:30      0/1:100:56
886 1       48459453        rs212985        C       T       .       PASS    AA=C;DP=166     GT:GQ:DP        0/1:100:34      0/1:100:31      0/1:100:102
887 1       53980634        rs797898        C       T       .       PASS    AA=T;DP=124     GT:GQ:DP        0/1:100:34      0/1:100:31      0/1:100:60
888 2       40519299        rs11685475      C       G       .       PASS    AA=G;DP=128     GT:GQ:DP        0/1:100:34      0/1:100:31      0/1:100:64
889 2       134277481       rs6759873       C       G       .       PASS    AA=C;DP=162     GT:GQ:DP        0/1:100:34      0/1:100:33      0/1:100:88
890 4       110372361       rs6817850       A       G       .       PASS    AA=G;DP=168     GT:GQ:DP        0/1:100:34      0/1:100:34      0/1:100:53
891 13      78738244        rs7322427       A       G       .       PASS    AA=G;DP=151     GT:GQ:DP        0/1:100:34      0/1:100:35      0/1:100:84
892 8       36282676        .       C       T       .       PASS    AA=c;DP=147     GT:GQ:DP        0/1:100:34      0/1:100:36      0/1:100:80
893 6       114814941       .       C       G       .       PASS    AA=G;DP=151     GT:GQ:DP        0/1:100:34      0/1:100:37      0/1:100:82
894 8       11437439        rs17153437      A       G       .       PASS    AA=A;DP=142     GT:GQ:DP        0/1:100:34      0/1:13:27       0/1:100:81
895 5       1378803 rs465498        A       G       .       PASS    AA=G;DP=127     GT:GQ:DP        0/1:100:34      0/1:15:23       0/1:100:66
896 7       151172426       rs6953067       C       G       .       PASS    AA=G;DP=114     GT:GQ:DP        0/1:100:34      0/1:35:13       0/1:100:68
897 1       183095000       rs234668        A       G       .       PASS    AA=G;DP=117;HM2;HM3     GT:GQ:DP        0/1:100:34      0/1:36:20       0/1:100:64
898 21      38830033        rs7280823       A       G       .       PASS    AA=G;DP=129     GT:GQ:DP        0/1:100:34      0/1:45:24       0/1:100:70
899 9       97480928        rs10816348      A       C       .       PASS    AA=A;DP=115     GT:GQ:DP        0/1:100:34      0/1:49:13       0/1:100:69
900 2       45303116        rs6743472       A       G       .       PASS    AA=A;DP=125     GT:GQ:DP        0/1:100:34      0/1:54:18       0/1:100:72
901 12      19750154        rs4307783       A       G       .       PASS    AA=a;DP=108     GT:GQ:DP        0/1:100:34      0/1:63:18       0/1:100:58
902 3       58023722        rs6445941       C       T       .       PASS    AA=C;DP=137     GT:GQ:DP        0/1:100:34      0/1:63:23       0/1:100:82
903 1       49324623        rs6588238       C       T       .       PASS    AA=T;DP=108;HM2;HM3     GT:GQ:DP        0/1:100:34      0/1:65:20       0/1:100:44
904 16      79593825        rs2602411       A       G       .       PASS    AA=G;DP=146     GT:GQ:DP        0/1:100:34      0/1:65:28       0/1:100:39
905 14      81171590        rs4904010       A       T       .       PASS    AA=T;DP=102     GT:GQ:DP        0/1:100:34      0/1:67:13       0/1:100:31
906 7       112749019       rs1722325       A       G       .       PASS    AA=A;DP=116     GT:GQ:DP        0/1:100:34      0/1:6:19        0/1:100:63
907 4       178873520       rs6819678       C       T       .       PASS    AA=C;DP=110     GT:GQ:DP        0/1:100:34      0/1:70:19       0/1:100:52
908 6       37349762        rs6917722       A       G       .       PASS    AA=A;DP=145     GT:GQ:DP        0/1:100:34      0/1:74:30       0/1:100:71
909 5       176038224       .       G       T       .       PASS    AA=G;DP=144     GT:GQ:DP        0/1:100:34      0/1:76:14       0/1:100:93
910 8       13033439        rs13255113      A       G       .       PASS    AA=G;DP=133     GT:GQ:DP        0/1:100:34      0/1:76:22       0/1:100:77
911 8       32460587        rs17717485      A       G       .       PASS    AA=A;DP=155     GT:GQ:DP        0/1:100:34      0/1:77:25       0/1:100:98
912 2       153089749       rs7595822       A       G       .       PASS    AA=A;DP=133     GT:GQ:DP        0/1:100:34      0/1:78:17       0/1:100:81
913 11      100878007       rs7934219       C       T       .       PASS    AA=T;DP=121     GT:GQ:DP        0/1:100:34      0/1:84:22       0/1:100:63
914 3       8922542 rs7613929       C       T       .       PASS    AA=C;DP=117     GT:GQ:DP        0/1:100:34      0/1:87:19       0/1:100:64
915 10      72326008        rs827351        A       G       .       PASS    AA=A;DP=133     GT:GQ:DP        0/1:100:34      0/1:87:28       0/1:100:71
916 6       112474618       .       C       T       .       PASS    AA=C;DP=149     GT:GQ:DP        0/1:100:34      0/1:90:29       0/1:100:37
917 18      74307634        rs7230742       G       T       .       PASS    AA=A;DP=117     GT:GQ:DP        0/1:100:34      0/1:91:22       0/1:100:62
918 5       174743145       rs57719302      G       T       .       PASS    AA=G;DP=142     GT:GQ:DP        0/1:100:34      0/1:94:27       0/1:100:79
919 22      35676957        rs5756421       A       G       .       PASS    AA=N;DP=142     GT:GQ:DP        0/1:100:34      0/1:95:23       0/1:100:84
920 12      41837767        rs7974795       G       T       .       PASS    AA=G;DP=127     GT:GQ:DP        0/1:100:34      0/1:96:24       0/1:100:68
921 12      29921902        rs12226994      C       T       .       PASS    AA=C;DP=130     GT:GQ:DP        0/1:100:34      0/1:99:21       0/1:100:73
922 7       22121108        rs11768715      A       G       .       PASS    AA=A;DP=112     GT:GQ:DP        0/1:100:35      0/1:100:20      0/1:100:55
923 5       136951760       rs8180475       C       T       .       PASS    AA=C;DP=122     GT:GQ:DP        0/1:100:35      0/1:100:21      0/1:100:65
924 17      10223954        rs8079011       A       G       .       PASS    AA=A;DP=136     GT:GQ:DP        0/1:100:35      0/1:100:22      0/1:100:80
925 17      27093316        rs8074803       A       G       .       PASS    AA=G;DP=155     GT:GQ:DP        0/1:100:35      0/1:100:23      0/1:100:48
926 6       70630857        rs1538965       A       C       .       PASS    AA=C;DP=114     GT:GQ:DP        0/1:100:35      0/1:100:23      0/1:100:55
927 6       96507495        rs34173051      A       G       .       PASS    AA=A;DP=111     GT:GQ:DP        0/1:100:35      0/1:100:24      0/1:100:52
928 18      49045672        rs1431199       C       G       .       PASS    AA=G;DP=124     GT:GQ:DP        0/1:100:35      0/1:100:24      0/1:100:64
929 2       2728527 rs2053906       A       G       .       PASS    AA=G;DP=136     GT:GQ:DP        0/1:100:35      0/1:100:24      0/1:100:75
930 4       127723938       rs35935071      A       G       .       PASS    AA=A;DP=138     GT:GQ:DP        0/1:100:35      0/1:100:24      0/1:100:76
931 7       47882442        rs4724657       A       G       .       PASS    AA=G;DP=167     GT:GQ:DP        0/1:100:35      0/1:100:26      0/1:100:109
932 10      44012849        rs10160170      A       G       .       PASS    AA=A;DP=144     GT:GQ:DP        0/1:100:35      0/1:100:27      0/1:100:82
933 18      33413170        rs1557343       A       T       .       PASS    AA=A;DP=157     GT:GQ:DP        0/1:100:35      0/1:100:28      0/1:100:86
934 1       174027812       rs59691682      C       T       .       PASS    AA=c;DP=154     GT:GQ:DP        0/1:100:35      0/1:100:28      0/1:100:95
935 9       3694271 rs1334067       A       G       .       PASS    AA=G;DP=149     GT:GQ:DP        0/1:100:35      0/1:100:29      0/1:100:86
936 12      6160802 rs4290286       A       G       .       PASS    AA=-;DP=161     GT:GQ:DP        0/1:100:35      0/1:100:32      0/1:100:46
937 20      2707013 rs215520        C       T       .       PASS    AA=C;DP=146     GT:GQ:DP        0/1:100:35      0/1:17:26       0/1:100:86
938 1       16022911        rs56878041      C       T       .       PASS    AA=c;DP=114     GT:GQ:DP        0/1:100:35      0/1:25:18       0/1:100:61
939 4       12495052        rs4834902       C       T       .       PASS    AA=C;DP=121     GT:GQ:DP        0/1:100:35      0/1:28:18       0/1:100:65
940 12      125307026       .       C       G       .       PASS    AA=C;DP=127     GT:GQ:DP        0/1:100:35      0/1:33:19       0/1:100:72
941 1       113254282       rs7539797       C       T       .       PASS    AA=C;DP=124     GT:GQ:DP        0/1:100:35      0/1:42:18       0/1:100:72
942 21      37341652        rs12482635      C       T       .       PASS    AA=C;DP=107     GT:GQ:DP        0/1:100:35      0/1:44:10       0/1:100:50
943 3       46697696        rs13080080      G       T       .       PASS    AA=T;DP=98      GT:GQ:DP        0/1:100:35      0/1:45:12       0/1:100:40
944 19      4053137 rs8100110       A       G       .       PASS    AA=A;DP=131     GT:GQ:DP        0/1:100:35      0/1:50:16       0/1:100:79
945 18      41511062        rs3861805       C       T       .       PASS    AA=T;DP=126     GT:GQ:DP        0/1:100:35      0/1:57:18       0/1:100:76
946 12      41688182        rs7957277       A       T       .       PASS    AA=-;DP=94      GT:GQ:DP        0/1:100:35      0/1:62:18       0/1:100:34
947 7       66865302        rs10250491      A       G       .       PASS    AA=G;DP=120     GT:GQ:DP        0/1:100:35      0/1:62:26       0/1:100:62
948 1       8945953 .       C       T       .       PASS    AA=C;DP=142     GT:GQ:DP        0/1:100:35      0/1:63:19       0/1:100:52
949 20      52391649        rs793049        C       G       .       PASS    AA=G;DP=129     GT:GQ:DP        0/1:100:35      0/1:63:27       0/1:100:68
950 2       37849231        rs12615742      C       T       .       PASS    AA=C;DP=152     GT:GQ:DP        0/1:100:35      0/1:63:37       0/1:100:73
951 18      6189331 .       C       T       .       PASS    AA=T;DP=131     GT:GQ:DP        0/1:100:35      0/1:66:27       0/1:100:71
952 3       99353112        .       C       T       .       PASS    AA=C;DP=115     GT:GQ:DP        0/1:100:35      0/1:69:20       0/1:100:61
953 4       169854703       rs4425335       A       G       .       PASS    AA=G;DP=133     GT:GQ:DP        0/1:100:35      0/1:69:27       0/1:100:73
954 4       185180607       rs11937038      A       G       .       PASS    AA=A;DP=161     GT:GQ:DP        0/1:100:35      0/1:72:26       0/1:100:54
955 4       139856984       rs6851505       G       T       .       PASS    AA=G;DP=131     GT:GQ:DP        0/1:100:35      0/1:74:25       0/1:100:70
956 5       80429705        rs455461        G       T       .       PASS    AA=T;DP=144     GT:GQ:DP        0/1:100:35      0/1:78:25       0/1:100:87
957 4       154130477       rs6821628       C       T       .       PASS    AA=C;DP=122     GT:GQ:DP        0/1:100:35      0/1:84:15       0/1:100:72
958 13      42835375        rs9533462       C       T       .       PASS    AA=C;DP=119     GT:GQ:DP        0/1:100:35      0/1:85:21       0/1:100:62
959 3       46588547        .       A       G       .       PASS    AA=A;DP=99      GT:GQ:DP        0/1:100:35      0/1:90:16       0/1:100:48
960 5       148559497       rs4290999       A       G       .       PASS    AA=G;DP=136     GT:GQ:DP        0/1:100:35      0/1:91:25       0/1:100:76
961 18      12712888        rs1941074       C       G       .       PASS    AA=G;DP=124     GT:GQ:DP        0/1:100:35      0/1:92:23       0/1:100:65
962 6       70536823        rs1902653       C       T       .       PASS    AA=C;DP=145     GT:GQ:DP        0/1:100:35      0/1:92:26       0/1:100:87
963 7       134200378       rs3800745       A       G       .       PASS    AA=A;DP=149     GT:GQ:DP        0/1:100:35      0/1:94:26       0/1:100:83
964 1       47619575        rs3814003       C       G       .       PASS    AA=G;DP=139;HM2 GT:GQ:DP        0/1:100:35      0/1:98:24       0/1:100:80
965 3       128517080       .       G       T       .       PASS    AA=T;DP=117     GT:GQ:DP        0/1:100:35      0/1:99:16       0/1:100:66
966 5       79812428        rs856772        A       G       .       PASS    AA=G;DP=117     GT:GQ:DP        0/1:100:36      0/1:100:19      0/1:100:63
967 7       140639225       rs17133517      A       C       .       PASS    AA=A;DP=111     GT:GQ:DP        0/1:100:36      0/1:100:20      0/1:100:56
968 8       3484041 rs4523281       C       T       .       PASS    AA=C;DP=119     GT:GQ:DP        0/1:100:36      0/1:100:20      0/1:100:58
969 9       15280342        rs10810371      C       G       .       PASS    AA=C;DP=125     GT:GQ:DP        0/1:100:36      0/1:100:20      0/1:100:70
970 2       1194612 rs4971414       A       G       .       PASS    AA=A;DP=134     GT:GQ:DP        0/1:100:36      0/1:100:22      0/1:100:75
971 1       201144020       rs9919219       C       T       .       PASS    AA=T;DP=133;HM2;HM3     GT:GQ:DP        0/1:100:36      0/1:100:22      0/1:100:78
972 6       129679608       rs1490392       C       T       .       PASS    AA=T;DP=147     GT:GQ:DP        0/1:100:36      0/1:100:24      0/1:100:82
973 9       118224904       rs1558921       C       T       .       PASS    AA=C;DP=133     GT:GQ:DP        0/1:100:36      0/1:100:28      0/1:100:70
974 10      114138679       rs12255316      C       T       .       PASS    AA=C;DP=145     GT:GQ:DP        0/1:100:36      0/1:100:28      0/1:100:83
975 16      25810187        rs4592663       C       T       .       PASS    AA=C;DP=129     GT:GQ:DP        0/1:100:36      0/1:100:30      0/1:100:63
976 3       100210983       rs2470833       C       G       .       PASS    AA=C;DP=133     GT:GQ:DP        0/1:100:36      0/1:100:30      0/1:100:68
977 10      112157318       rs4918512       A       G       .       PASS    AA=G;DP=152     GT:GQ:DP        0/1:100:36      0/1:100:31      0/1:100:45
978 13      78951170        rs11840407      C       T       .       PASS    AA=T;DP=144     GT:GQ:DP        0/1:100:36      0/1:100:32      0/1:100:76
979 1       190667774       rs6664948       C       G       .       PASS    AA=C;DP=132     GT:GQ:DP        0/1:100:36      0/1:100:33      0/1:100:66
980 11      12926190        .       C       T       .       PASS    AA=C;DP=164     GT:GQ:DP        0/1:100:36      0/1:100:43      0/1:100:86
981 9       17570616        rs8181077       A       T       .       PASS    AA=A;DP=144     GT:GQ:DP        0/1:100:36      0/1:32:22       0/1:100:91
982 4       76783630        rs7676322       C       T       .       PASS    AA=T;DP=88      GT:GQ:DP        0/1:100:36      0/1:39:15       0/1:100:25
983 14      87577583        rs28424269      C       G       .       PASS    AA=c;DP=158     GT:GQ:DP        0/1:100:36      0/1:40:32       0/1:100:52
984 8       96809021        rs4495398       C       T       .       PASS    AA=C;DP=116     GT:GQ:DP        0/1:100:36      0/1:45:18       0/1:100:59
985 6       107478378       rs2593801       C       T       .       PASS    AA=c;DP=109     GT:GQ:DP        0/1:100:36      0/1:46:23       0/1:100:51
986 11      62820064        rs474874        A       G       .       PASS    AA=a;DP=109     GT:GQ:DP        0/1:100:36      0/1:49:18       0/1:100:55
987 3       135094768       rs10935088      A       G       .       PASS    AA=A;DP=130     GT:GQ:DP        0/1:100:36      0/1:49:18       0/1:100:79
988 3       162613965       rs35713426      A       G       .       PASS    AA=G;DP=118     GT:GQ:DP        0/1:100:36      0/1:51:22       0/1:100:62
989 1       73303748        rs9919151       C       G       .       PASS    AA=C;DP=119;HM2 GT:GQ:DP        0/1:100:36      0/1:51:24       0/1:100:57
990 22      43582197        rs5766046       C       T       .       PASS    AA=C;DP=147     GT:GQ:DP        0/1:100:36      0/1:53:20       0/1:100:49
991 2       239303420       rs6720396       C       T       .       PASS    AA=C;DP=136     GT:GQ:DP        0/1:100:36      0/1:54:13       0/1:100:87
992 12      103960082       rs4964319       A       G       .       PASS    AA=a;DP=125     GT:GQ:DP        0/1:100:36      0/1:58:10       0/1:100:79
993 8       142484832       rs34642025      A       G       .       PASS    AA=G;DP=154     GT:GQ:DP        0/1:100:36      0/1:58:13       0/1:100:101
994 4       8662097 rs7692629       C       T       .       PASS    AA=C;DP=153     GT:GQ:DP        0/1:100:36      0/1:58:27       0/1:100:88
995 2       218115626       .       C       T       .       PASS    AA=C;DP=107     GT:GQ:DP        0/1:100:36      0/1:60:8        0/1:100:63
996 2       220502887       rs36063538      A       T       .       PASS    AA=T;DP=121     GT:GQ:DP        0/1:100:36      0/1:62:23       0/1:100:39
997 10      28205721        rs7077304       A       G       .       PASS    AA=G;DP=157     GT:GQ:DP        0/1:100:36      0/1:62:30       0/1:100:90
998 2       31125285        .       A       G       .       PASS    AA=A;DP=104     GT:GQ:DP        0/1:100:36      0/1:63:15       0/1:100:44
999 5       114869185       rs2546483       C       T       .       PASS    AA=T;DP=133     GT:GQ:DP        0/1:100:36      0/1:63:20       0/1:100:75
1000 4       82843753        rs11933634      C       T       .       PASS    AA=C;DP=138     GT:GQ:DP        0/1:100:36      0/1:66:24       0/1:100:79
1001 6       11309513        rs3798736       A       G       .       PASS    AA=A;DP=118     GT:GQ:DP        0/1:100:36      0/1:68:22       0/1:100:60
1002 9       29571901        rs6415761       C       T       .       PASS    AA=T;DP=139     GT:GQ:DP        0/1:100:36      0/1:73:15       0/1:100:89
1003 12      123337488       .       C       T       .       PASS    AA=C;DP=103     GT:GQ:DP        0/1:100:36      0/1:77:15       0/1:100:51
1004 9       31448434        rs10970358      A       C       .       PASS    AA=A;DP=110     GT:GQ:DP        0/1:100:36      0/1:78:20       0/1:100:54
1005 2       158042035       rs6756844       A       G       .       PASS    AA=A;DP=153     GT:GQ:DP        0/1:100:36      0/1:84:32       0/1:100:46
1006 3       195473347       rs11919378      C       G       .       PASS    AA=C;DP=164     GT:GQ:DP        0/1:100:36      0/1:87:19       0/1:100:65
1007 3       129730529       rs4857854       C       T       .       PASS    AA=T;DP=136     GT:GQ:DP        0/1:100:36      0/1:92:26       0/1:100:73
1008 18      19785157        rs17187332      C       T       .       PASS    AA=C;DP=121     GT:GQ:DP        0/1:100:36      0/1:93:20       0/1:100:66
1009 1       27776239        .       C       T       .       PASS    AA=T;DP=135     GT:GQ:DP        0/1:100:36      0/1:93:21       0/1:100:76
1010 2       128402503       rs2164655       C       T       .       PASS    AA=c;DP=133     GT:GQ:DP        0/1:100:36      0/1:93:24       0/1:100:74
1011 5       21753617        .       A       G       .       PASS    AA=a;DP=147     GT:GQ:DP        0/1:100:36      0/1:95:30       0/1:100:75
1012 21      43675693        rs128543        A       G       .       PASS    AA=G;DP=128     GT:GQ:DP        0/1:100:36      0/1:96:22       0/1:100:72
1013 14      94718431        rs56817762      C       G       .       PASS    AA=C;DP=127     GT:GQ:DP        0/1:100:36      0/1:97:31       0/1:100:60
1014 9       85450407        rs1537503       C       T       .       PASS    AA=C;DP=119     GT:GQ:DP        0/1:100:37      0/1:100:23      0/1:100:54
1015 5       60802650        rs13172080      A       G       .       PASS    AA=A;DP=125     GT:GQ:DP        0/1:100:37      0/1:100:23      0/1:100:63
1016 4       129661248       rs6534689       A       G       .       PASS    AA=G;DP=132     GT:GQ:DP        0/1:100:37      0/1:100:23      0/1:100:72
1017 18      54641026        rs28634172      C       T       .       PASS    AA=T;DP=142     GT:GQ:DP        0/1:100:37      0/1:100:23      0/1:100:80
1018 4       163579912       rs10013245      C       T       .       PASS    AA=t;DP=118     GT:GQ:DP        0/1:100:37      0/1:100:25      0/1:100:60
1019 9       119209373       rs10739493      C       T       .       PASS    AA=T;DP=154     GT:GQ:DP        0/1:100:37      0/1:100:27      0/1:100:89
1020 11      36720864        rs964527        A       G       .       PASS    AA=G;DP=137     GT:GQ:DP        0/1:100:37      0/1:100:28      0/1:100:72
1021 9       939942  rs12004781      C       G       .       PASS    AA=C;DP=140     GT:GQ:DP        0/1:100:37      0/1:100:28      0/1:100:75
1022 3       16834714        rs6779302       G       T       .       PASS    AA=T;DP=142     GT:GQ:DP        0/1:100:37      0/1:100:28      0/1:100:81
1023 1       216858134       rs28694430      A       C       .       PASS    AA=C;DP=138     GT:GQ:DP        0/1:100:37      0/1:100:29      0/1:100:71
1024 7       119871214       rs7800592       A       G       .       PASS    AA=a;DP=148     GT:GQ:DP        0/1:100:37      0/1:100:31      0/1:100:83
1025 7       130319756       .       C       G       .       PASS    AA=c;DP=151     GT:GQ:DP        0/1:100:37      0/1:100:31      0/1:100:88
1026 14      76221088        rs2041825       A       G       .       PASS    AA=A;DP=124     GT:GQ:DP        0/1:100:37      0/1:100:33      0/1:100:56
1027 7       16972366        rs7787613       C       T       .       PASS    AA=C;DP=153     GT:GQ:DP        0/1:100:37      0/1:100:33      0/1:100:81
1028 10      65252298        rs10995646      A       G       .       PASS    AA=A;DP=145     GT:GQ:DP        0/1:100:37      0/1:100:34      0/1:100:78
1029 10      71570195        rs4746969       G       T       .       PASS    AA=T;DP=165     GT:GQ:DP        0/1:100:37      0/1:100:36      0/1:100:92
1030 14      74567737        rs735452        C       T       .       PASS    AA=C;DP=145     GT:GQ:DP        0/1:100:37      0/1:100:41      0/1:100:68
1031 14      75861836        rs8003968       A       C       .       PASS    AA=C;DP=166     GT:GQ:DP        0/1:100:37      0/1:15:29       0/1:100:99
1032 16      87498700        .       C       G       .       PASS    AA=C;DP=124     GT:GQ:DP        0/1:100:37      0/1:34:12       0/1:100:75
1033 3       196447689       .       C       T       .       PASS    AA=T;DP=122     GT:GQ:DP        0/1:100:37      0/1:36:13       0/1:100:71
1034 7       13460225        rs10155975      C       T       .       PASS    AA=T;DP=137     GT:GQ:DP        0/1:100:37      0/1:41:23       0/1:100:82
1035 9       17287694        rs17828423      C       T       .       PASS    AA=C;DP=128     GT:GQ:DP        0/1:100:37      0/1:43:21       0/1:100:70
1036 11      34389117        .       C       T       .       PASS    AA=C;DP=116     GT:GQ:DP        0/1:100:37      0/1:49:14       0/1:100:64
1037 10      134774650       rs59142670      A       T       .       PASS    AA=T;DP=81      GT:GQ:DP        0/1:100:37      0/1:4:9 0/1:100:27
1038 8       36265391        rs6998508       C       T       .       PASS    AA=T;DP=137     GT:GQ:DP        0/1:100:37      0/1:53:28       0/1:100:76
1039 14      101325581       rs61994021      C       T       .       PASS    AA=C;DP=120     GT:GQ:DP        0/1:100:37      0/1:55:14       0/1:100:69
1040 8       134666919       rs7007549       G       T       .       PASS    AA=G;DP=148     GT:GQ:DP        0/1:100:37      0/1:58:19       0/1:100:94
1041 1       208655124       rs4845016       C       T       .       PASS    AA=T;DP=148;HM2;HM3     GT:GQ:DP        0/1:100:37      0/1:61:27       0/1:100:84
1042 2       8718936 .       A       G       .       PASS    AA=A;DP=139     GT:GQ:DP        0/1:100:37      0/1:68:21       0/1:100:82
1043 3       4206751 rs1385485       C       T       .       PASS    AA=T;DP=128     GT:GQ:DP        0/1:100:37      0/1:73:22       0/1:100:68
1044 11      101115590       rs4384360       C       T       .       PASS    AA=c;DP=138     GT:GQ:DP        0/1:100:37      0/1:75:21       0/1:100:81
1045 10      49061124        rs2059957       A       G       .       PASS    AA=G;DP=135     GT:GQ:DP        0/1:100:37      0/1:76:22       0/1:100:78
1046 20      44641934        rs202386        C       T       .       PASS    AA=T;DP=125     GT:GQ:DP        0/1:100:37      0/1:81:29       0/1:100:58
1047 1       8794552 rs7546225       C       T       .       PASS    AA=C;DP=124;HM2;HM3     GT:GQ:DP        0/1:100:37      0/1:82:22       0/1:100:65
1048 1       159584555       rs35130144      A       G       .       PASS    AA=a;DP=111     GT:GQ:DP        0/1:100:37      0/1:83:17       0/1:100:44
1049 13      41587009        rs9533002       C       T       .       PASS    AA=C;DP=118     GT:GQ:DP        0/1:100:37      0/1:85:19       0/1:100:63
1050 18      70253050        rs756010        C       T       .       PASS    AA=T;DP=146     GT:GQ:DP        0/1:100:37      0/1:87:24       0/1:100:44
1051 14      52932736        rs7154454       A       T       .       PASS    AA=A;DP=117     GT:GQ:DP        0/1:100:37      0/1:89:19       0/1:100:61
1052 13      87975718        rs9521104       G       T       .       PASS    AA=g;DP=123     GT:GQ:DP        0/1:100:37      0/1:90:22       0/1:100:60
1053 13      77449143        rs35151769      A       T       .       PASS    AA=T;DP=139     GT:GQ:DP        0/1:100:37      0/1:90:22       0/1:100:82
1054 12      110138746       rs10083213      C       T       .       PASS    AA=C;DP=140     GT:GQ:DP        0/1:100:37      0/1:92:29       0/1:100:77
1055 3       123581388       rs16833066      A       G       .       PASS    AA=a;DP=128     GT:GQ:DP        0/1:100:37      0/1:94:22       0/1:100:68
1056 2       190606463       rs1011584       A       G       .       PASS    AA=G;DP=119     GT:GQ:DP        0/1:100:37      0/1:94:24       0/1:100:58
1057 16      26200905        rs28386811      G       T       .       PASS    AA=T;DP=132     GT:GQ:DP        0/1:100:37      0/1:94:26       0/1:100:68
1058 5       21584652        .       C       T       .       PASS    AA=c;DP=143     GT:GQ:DP        0/1:100:37      0/1:98:26       0/1:100:81
1059 2       75255573        rs12477554      A       G       .       PASS    AA=A;DP=139     GT:GQ:DP        0/1:100:37      0/1:99:17       0/1:100:43
1060 13      97676809        rs8002043       A       G       .       PASS    AA=A;DP=122     GT:GQ:DP        0/1:100:38      0/1:100:21      0/1:100:61
1061 9       134872910       rs2773813       C       T       .       PASS    AA=c;DP=160     GT:GQ:DP        0/1:100:38      0/1:100:27      0/1:100:98
1062 10      98856285        rs7895198       A       G       .       PASS    AA=G;DP=170     GT:GQ:DP        0/1:100:38      0/1:100:37      0/1:100:54
1063 16      82838846        rs62048573      C       G       .       PASS    AA=C;DP=122     GT:GQ:DP        0/1:100:38      0/1:12:20       0/1:100:63
1064 6       86667436        rs4707239       G       T       .       PASS    AA=t;DP=120     GT:GQ:DP        0/1:100:38      0/1:36:18       0/1:100:64
1065 2       241315894       .       C       T       .       PASS    AA=C;DP=149     GT:GQ:DP        0/1:100:38      0/1:38:12       0/1:100:60
1066 5       71047008        rs3967801       G       T       .       PASS    AA=G;DP=111     GT:GQ:DP        0/1:100:38      0/1:41:18       0/1:100:43
1067 1       191761813       rs59223353      C       T       .       PASS    AA=C;DP=138     GT:GQ:DP        0/1:100:38      0/1:44:26       0/1:100:73
1068 9       76351451        rs7025191       C       T       .       PASS    AA=T;DP=140     GT:GQ:DP        0/1:100:38      0/1:56:29       0/1:100:73
1069 6       16458371        rs59919885      G       T       .       PASS    AA=T;DP=133     GT:GQ:DP        0/1:100:38      0/1:57:22       0/1:100:73
1070 1       52163620        rs1954260       C       T       .       PASS    AA=c;DP=175;HM2 GT:GQ:DP        0/1:100:38      0/1:58:28       0/1:100:54
1071 17      1833902 rs4450433       A       G       .       PASS    AA=A;DP=123     GT:GQ:DP        0/1:100:38      0/1:63:14       0/1:100:71
1072 13      81281038        rs398899        A       C       .       PASS    AA=C;DP=128     GT:GQ:DP        0/1:100:38      0/1:67:23       0/1:100:67
1073 5       133127078       rs258072        C       T       .       PASS    AA=C;DP=149     GT:GQ:DP        0/1:100:38      0/1:78:22       0/1:100:66
1074 16      30619773        .       G       T       .       PASS    AA=G;DP=148     GT:GQ:DP        0/1:100:38      0/1:80:23       0/1:100:90
1075 1       47342272        rs6701611       G       T       .       PASS    AA=t;DP=131     GT:GQ:DP        0/1:100:38      0/1:82:18       0/1:100:76
1076 5       109065431       rs2269199       G       T       .       PASS    AA=G;DP=140     GT:GQ:DP        0/1:100:38      0/1:91:25       0/1:100:76
1077 1       231074727       rs2753395       A       G       .       PASS    AA=A;DP=134;HM2;HM3     GT:GQ:DP        0/1:100:38      0/1:93:20       0/1:100:78
1078 10      118898310       .       C       G       .       PASS    AA=C;DP=114     GT:GQ:DP        0/1:100:39      0/1:100:16      0/1:100:61
1079 18      1752992 .       A       G       .       PASS    AA=G;DP=123     GT:GQ:DP        0/1:100:39      0/1:100:23      0/1:100:58
1080 11      129990572       .       A       T       .       PASS    AA=A;DP=118     GT:GQ:DP        0/1:100:39      0/1:100:25      0/1:100:52
1081 7       8520851 rs1024476       A       T       .       PASS    AA=A;DP=141     GT:GQ:DP        0/1:100:39      0/1:100:26      0/1:100:81
1082 12      104283968       rs1432588       C       T       .       PASS    AA=C;DP=157     GT:GQ:DP        0/1:100:39      0/1:100:29      0/1:100:54
1083 3       31034985        rs9838758       C       T       .       PASS    AA=T;DP=156     GT:GQ:DP        0/1:100:39      0/1:100:31      0/1:100:88
1084 1       153679984       .       C       T       .       PASS    AA=T;DP=138     GT:GQ:DP        0/1:100:39      0/1:100:34      0/1:100:58
1085 5       6420854 rs57693483      C       T       .       PASS    AA=T;DP=135     GT:GQ:DP        0/1:100:39      0/1:100:34      0/1:100:63
1086 16      16858882        rs4074171       A       G       .       PASS    AA=A;DP=139     GT:GQ:DP        0/1:100:39      0/1:100:34      0/1:100:69
1087 6       57518020        rs7742471       A       T       .       PASS    AA=T;DP=168     GT:GQ:DP        0/1:100:39      0/1:100:35      0/1:100:95
1088 12      109925149       rs61334704      C       G       .       PASS    AA=G;DP=103     GT:GQ:DP        0/1:100:39      0/1:47:14       0/1:100:50
1089 6       57703610        .       A       G       .       PASS    AA=A;DP=166     GT:GQ:DP        0/1:100:39      0/1:47:26       0/1:100:101
1090 6       14513715        rs6941243       A       G       .       PASS    AA=A;DP=160     GT:GQ:DP        0/1:100:39      0/1:48:30       0/1:100:88
1091 5       96734518        rs59471782      C       G       .       PASS    AA=C;DP=108     GT:GQ:DP        0/1:100:39      0/1:52:17       0/1:100:55
1092 15      72350177        rs240047        A       G       .       PASS    AA=G;DP=111     GT:GQ:DP        0/1:100:39      0/1:53:17       0/1:100:48
1093 22      43825340        rs5765137       A       G       .       PASS    AA=A;DP=136     GT:GQ:DP        0/1:100:39      0/1:63:18       0/1:100:72
1094 14      90375274        rs17127064      C       T       .       PASS    AA=C;DP=139     GT:GQ:DP        0/1:100:39      0/1:64:24       0/1:100:76
1095 3       153110678       rs6806340       C       T       .       PASS    AA=T;DP=128     GT:GQ:DP        0/1:100:39      0/1:79:19       0/1:100:72
1096 14      32771833        rs17100409      A       G       .       PASS    AA=G;DP=131     GT:GQ:DP        0/1:100:39      0/1:87:30       0/1:100:63
1097 4       188050918       rs28447565      C       G       .       PASS    AA=C;DP=101     GT:GQ:DP        0/1:100:40      0/1:100:16      0/1:100:46
1098 12      91672038        rs9669519       A       T       .       PASS    AA=T;DP=127     GT:GQ:DP        0/1:100:40      0/1:100:21      0/1:100:66
1099 7       134937407       .       A       G       .       PASS    AA=A;DP=135     GT:GQ:DP        0/1:100:40      0/1:100:21      0/1:100:73
1100 5       142496875       rs246601        C       T       .       PASS    AA=T;DP=131     GT:GQ:DP        0/1:100:40      0/1:100:22      0/1:100:68
1101 4       90136158        rs10007590      A       G       .       PASS    AA=A;DP=115     GT:GQ:DP        0/1:100:40      0/1:100:25      0/1:100:47
1102 18      5608950 rs4798379       C       T       .       PASS    AA=C;DP=127     GT:GQ:DP        0/1:100:40      0/1:100:25      0/1:100:60
1103 1       17258691        rs12404121      C       T       .       PASS    AA=C;DP=164;HM2;HM3     GT:GQ:DP        0/1:100:40      0/1:100:26      0/1:100:99
1104 4       154393610       rs13107078      A       G       .       PASS    AA=G;DP=158     GT:GQ:DP        0/1:100:40      0/1:100:27      0/1:100:92
1105 12      61305717        rs907487        C       T       .       PASS    AA=C;DP=167     GT:GQ:DP        0/1:100:40      0/1:100:28      0/1:100:94
1106 12      130375389       rs4460893       A       G       .       PASS    AA=G;DP=146     GT:GQ:DP        0/1:100:40      0/1:100:29      0/1:100:77
1107 10      98902265        .       A       G       .       PASS    AA=A;DP=148     GT:GQ:DP        0/1:100:40      0/1:100:30      0/1:100:73
1108 11      106654307       rs7929893       A       G       .       PASS    AA=A;DP=133     GT:GQ:DP        0/1:100:40      0/1:100:31      0/1:100:61
1109 11      112404205       rs12288908      C       T       .       PASS    AA=T;DP=147     GT:GQ:DP        0/1:100:40      0/1:100:32      0/1:100:72
1110 15      31492518        .       A       G       .       PASS    AA=A;DP=142     GT:GQ:DP        0/1:100:40      0/1:100:36      0/1:100:64
1111 6       159945655       rs56762310      C       T       .       PASS    AA=c;DP=161     GT:GQ:DP        0/1:100:40      0/1:100:37      0/1:100:85
1112 7       6959765 rs3961242       A       C       .       PASS    AA=a;DP=165     GT:GQ:DP        0/1:100:40      0/1:25:27       0/1:100:86
1113 1       114797635       rs11102794      A       G       .       PASS    AA=G;DP=165;HM2;HM3     GT:GQ:DP        0/1:100:40      0/1:43:30       0/1:100:54
1114 6       109716312       rs9374079       A       G       .       PASS    AA=G;DP=110     GT:GQ:DP        0/1:100:40      0/1:76:17       0/1:100:42
1115 3       129083631       rs4399843       C       T       .       PASS    AA=T;DP=129     GT:GQ:DP        0/1:100:40      0/1:82:30       0/1:100:59
1116 4       117014079       rs17048146      C       T       .       PASS    AA=C;DP=127     GT:GQ:DP        0/1:100:40      0/1:90:22       0/1:100:65
1117 16      49689633        rs8055000       A       C       .       PASS    AA=A;DP=130     GT:GQ:DP        0/1:100:40      0/1:93:22       0/1:100:67
1118 3       141952961       rs12486650      C       T       .       PASS    AA=T;DP=142     GT:GQ:DP        0/1:100:40      0/1:98:21       0/1:100:68
1119 13      51783839        rs7331858       C       T       .       PASS    AA=T;DP=146     GT:GQ:DP        0/1:100:40      0/1:98:24       0/1:100:41
1120 2       129257991       rs12473283      C       T       .       PASS    AA=C;DP=137     GT:GQ:DP        0/1:100:41      0/1:100:23      0/1:100:72
1121 1       46667856        .       C       T       .       PASS    AA=C;DP=153     GT:GQ:DP        0/1:100:41      0/1:100:26      0/1:100:87
1122 3       72296777        rs4677106       C       G       .       PASS    AA=G;DP=186     GT:GQ:DP        0/1:100:41      0/1:100:27      0/1:100:66
1123 10      128771166       rs12264769      A       G       .       PASS    AA=G;DP=147     GT:GQ:DP        0/1:100:41      0/1:100:27      0/1:100:80
1124 14      93843770        rs2180401       G       T       .       PASS    AA=G;DP=146     GT:GQ:DP        0/1:100:41      0/1:100:30      0/1:100:74
1125 10      125830808       rs3936165       C       T       .       PASS    AA=T;DP=147     GT:GQ:DP        0/1:100:41      0/1:29:25       0/1:100:83
1126 19      62481059        rs8111136       C       T       .       PASS    AA=T;DP=126     GT:GQ:DP        0/1:100:41      0/1:53:16       0/1:100:73
1127 17      3943164 rs8080485       C       G       .       PASS    AA=G;DP=115     GT:GQ:DP        0/1:100:41      0/1:89:20       0/1:100:54
1128 13      62534059        .       A       G       .       PASS    AA=A;DP=175     GT:GQ:DP        0/1:100:41      0/1:90:36       0/1:100:66
1129 11      10515353        rs7938782       A       G       .       PASS    AA=A;DP=136     GT:GQ:DP        0/1:100:41      0/1:95:27       0/1:100:65
1130 12      78062535        rs12297890      G       T       .       PASS    AA=T;DP=115     GT:GQ:DP        0/1:100:42      0/1:100:18      0/1:100:44
1131 3       134493894       rs11922891      C       T       .       PASS    AA=T;DP=145     GT:GQ:DP        0/1:100:42      0/1:100:24      0/1:100:83
1132 4       62645492        rs4143482       A       G       .       PASS    AA=A;DP=126     GT:GQ:DP        0/1:100:42      0/1:100:31      0/1:100:45
1133 18      45740894        rs7239281       A       G       .       PASS    AA=G;DP=163     GT:GQ:DP        0/1:100:42      0/1:100:31      0/1:100:93
1134 12      61457312        rs11174642      A       C       .       PASS    AA=A;DP=145     GT:GQ:DP        0/1:100:42      0/1:100:36      0/1:100:69
1135 20      44696189        rs3091556       A       G       .       PASS    AA=A;DP=168     GT:GQ:DP        0/1:100:42      0/1:10:24       0/1:100:99
1136 22      31040094        rs16990181      A       G       .       PASS    AA=A;DP=117     GT:GQ:DP        0/1:100:42      0/1:23:24       0/1:100:51
1137 12      102132897       rs11111498      C       T       .       PASS    AA=C;DP=128     GT:GQ:DP        0/1:100:42      0/1:65:19       0/1:100:68
1138 4       9757979 rs6846402       C       T       .       PASS    AA=C;DP=138     GT:GQ:DP        0/1:100:42      0/1:67:29       0/1:100:68
1139 9       129503521       rs7047602       A       G       .       PASS    AA=A;DP=137     GT:GQ:DP        0/1:100:42      0/1:76:22       0/1:100:73
1140 16      49194311        rs11642424      A       G       .       PASS    AA=G;DP=174     GT:GQ:DP        0/1:100:42      0/1:77:32       0/1:100:102
1141 2       148024877       rs10208983      A       G       .       PASS    AA=A;DP=135     GT:GQ:DP        0/1:100:42      0/1:86:16       0/1:100:40
1142 4       2057000 rs3135157       A       G       .       PASS    AA=a;DP=121     GT:GQ:DP        0/1:100:42      0/1:91:20       0/1:100:58
1143 10      24060524        rs7903593       C       T       .       PASS    AA=T;DP=123     GT:GQ:DP        0/1:100:43      0/1:100:17      0/1:100:63
1144 7       37777756        rs28692733      A       G       .       PASS    AA=A;DP=132     GT:GQ:DP        0/1:100:43      0/1:100:22      0/1:100:65
1145 17      59020818        .       A       G       .       PASS    AA=A;DP=176     GT:GQ:DP        0/1:100:43      0/1:100:33      0/1:100:55
1146 1       87734172        .       A       C       .       PASS    AA=A;DP=166     GT:GQ:DP        0/1:100:43      0/1:100:33      0/1:100:92
1147 12      61417921        rs342161        A       G       .       PASS    AA=a;DP=159     GT:GQ:DP        0/1:100:43      0/1:100:34      0/1:100:85
1148 22      19206509        rs7291930       A       G       .       PASS    AA=G;DP=152     GT:GQ:DP        0/1:100:43      0/1:100:36      0/1:100:74
1149 3       140136086       .       C       T       .       PASS    AA=C;DP=166     GT:GQ:DP        0/1:100:43      0/1:75:30       0/1:100:92
1150 1       118942858       rs10923627      A       C       .       PASS    AA=C;DP=127;HM2 GT:GQ:DP        0/1:100:43      0/1:80:21       0/1:100:64
1151 3       99364236        .       G       T       .       PASS    AA=G;DP=161     GT:GQ:DP        0/1:100:43      0/1:80:25       0/1:100:92
1152 7       104726960       .       A       T       .       PASS    AA=A;DP=148     GT:GQ:DP        0/1:100:44      0/1:100:19      0/1:100:84
1153 15      63354851        rs8037323       C       T       .       PASS    AA=C;DP=137     GT:GQ:DP        0/1:100:44      0/1:100:23      0/1:100:68
1154 5       150382527       rs4958872       C       T       .       PASS    AA=c;DP=159     GT:GQ:DP        0/1:100:44      0/1:100:26      0/1:100:89
1155 11      112192066       rs630265        A       T       .       PASS    AA=A;DP=150     GT:GQ:DP        0/1:100:44      0/1:100:27      0/1:100:79
1156 3       59680175        rs1349015       C       G       .       PASS    AA=G;DP=146     GT:GQ:DP        0/1:100:44      0/1:100:28      0/1:100:75
1157 5       21597896        rs1603436       C       T       .       PASS    AA=.;DP=177     GT:GQ:DP        0/1:100:44      0/1:100:35      0/1:100:99
1158 13      20438868        rs9509473       C       G       .       PASS    AA=C;DP=122     GT:GQ:DP        0/1:100:44      0/1:23:15       0/1:100:58
1159 16      82631486        rs12925228      A       G       .       PASS    AA=A;DP=105     GT:GQ:DP        0/1:100:44      0/1:42:10       0/1:100:50
1160 5       119575272       rs11241535      A       C       .       PASS    AA=A;DP=140     GT:GQ:DP        0/1:100:44      0/1:57:21       0/1:100:73
1161 13      98297352        rs7986477       A       G       .       PASS    AA=a;DP=151     GT:GQ:DP        0/1:100:44      0/1:66:26       0/1:100:85
1162 1       197643623       rs585476        A       C       .       PASS    AA=A;DP=136;HM2;HM3     GT:GQ:DP        0/1:100:44      0/1:77:23       0/1:100:72
1163 18      33307185        rs56151557      C       T       .       PASS    AA=C;DP=128     GT:GQ:DP        0/1:100:44      0/1:93:18       0/1:100:66
1164 3       114692728       rs13098166      A       G       .       PASS    AA=A;DP=133     GT:GQ:DP        0/1:100:45      0/1:100:24      0/1:100:62
1165 1       77615351        rs11162329      A       C       .       PASS    AA=C;DP=165     GT:GQ:DP        0/1:100:45      0/1:100:31      0/1:100:48
1166 4       185136773       rs4241783       G       T       .       PASS    AA=G;DP=152     GT:GQ:DP        0/1:100:45      0/1:100:31      0/1:100:77
1167 11      109749132       rs7945071       G       T       .       PASS    AA=G;DP=168     GT:GQ:DP        0/1:100:45      0/1:100:37      0/1:100:86
1168 8       20275192        rs3892686       A       C       .       PASS    AA=a;DP=145     GT:GQ:DP        0/1:100:45      0/1:54:23       0/1:100:78
1169 9       126275584       .       C       T       .       PASS    AA=C;DP=175     GT:GQ:DP        0/1:100:45      0/1:58:21       0/1:100:65
1170 7       66494480        rs58299686      A       G       .       PASS    AA=N;DP=127     GT:GQ:DP        0/1:100:45      0/1:68:17       0/1:100:66
1171 19      56077214        rs8103659       A       G       .       PASS    AA=A;DP=147     GT:GQ:DP        0/1:100:45      0/1:95:26       0/1:100:81
1172 8       129242943       rs55886082      C       T       .       PASS    AA=C;DP=151     GT:GQ:DP        0/1:100:46      0/1:100:25      0/1:100:84
1173 6       108059866       rs4946842       C       T       .       PASS    AA=C;DP=152     GT:GQ:DP        0/1:100:46      0/1:88:20       0/1:100:83
1174 2       10473758        rs62130191      A       G       .       PASS    AA=A;DP=146     GT:GQ:DP        0/1:100:46      0/1:90:15       0/1:100:86
1175 8       128332630       rs6999177       C       G       .       PASS    AA=N;DP=155     GT:GQ:DP        0/1:100:47      0/1:100:34      0/1:100:80
1176 2       89392008        rs9309656       A       T       .       PASS    AA=.;DP=196     GT:GQ:DP        0/1:100:47      0/1:21:34       0/1:100:64
1177 18      23054354        .       C       G       .       PASS    AA=G;DP=167     GT:GQ:DP        0/1:100:47      0/1:78:32       0/1:100:85
1178 1       31869675        rs10798880      G       T       .       PASS    AA=T;DP=158;HM2;HM3     GT:GQ:DP        0/1:100:48      0/1:100:21      0/1:100:91
1179 17      21146363        .       C       T       .       PASS    AA=c;DP=155     GT:GQ:DP        0/1:100:49      0/1:100:31      0/1:100:75
1180 16      69730981        rs3114628       C       T       .       PASS    AA=T;DP=171     GT:GQ:DP        0/1:100:51      0/1:100:24      0/1:100:46
1181 6       32559713        .       C       T       .       PASS    AA=-;DP=148     GT:GQ:DP        0/1:100:51      0/1:36:20       0/1:100:76
1182 6       6654655 rs58082090      A       C       .       PASS    AA=A;DP=152     GT:GQ:DP        0/1:100:51      0/1:80:20       0/1:100:86
1183 7       56530311        .       C       T       .       PASS    AA=C;DP=158     GT:GQ:DP        0/1:100:53      0/1:56:20       0/1:100:85
1184 2       37974506        rs2707267       C       T       .       PASS    AA=C;DP=154     GT:GQ:DP        0/1:100:53      0/1:78:21       0/1:100:83
1185 10      47067457        rs7069401       A       G       .       PASS    AA=.;DP=170     GT:GQ:DP        0/1:100:58      0/1:100:27      0/1:100:85
1186 5       15977800        .       A       G       .       PASS    AA=A;DP=96      GT:GQ:DP        0/1:12:31       0/1:62:21       0/1:100:38
1187 1       56887051        rs10889002      C       T       .       PASS    AA=C;DP=105     GT:GQ:DP        0/1:14:13       0/1:71:26       0/1:100:66
1188 2       132726614       .       C       T       .       PASS    AA=.;DP=128     GT:GQ:DP        0/1:14:26       0/1:9:13        0/1:100:63
1189 3       55807936        .       A       T       .       PASS    AA=A;DP=67      GT:GQ:DP        0/1:15:13       0/1:7:12        0/1:100:42
1190 1       29585660        rs61174136      A       G       .       PASS    AA=A;DP=83      GT:GQ:DP        0/1:15:25       0/1:75:14       0/1:47:34
1191 2       67945544        rs35992416      A       G       .       PASS    AA=A;DP=80      GT:GQ:DP        0/1:18:16       0/1:92:16       0/1:100:36
1192 13      112506158       .       C       T       .       PASS    AA=c;DP=89      GT:GQ:DP        0/1:19:15       0/1:11:18       0/1:57:56
1193 14      27280725        rs61974391      C       G       .       PASS    AA=G;DP=98      GT:GQ:DP        0/1:19:20       0/1:68:16       0/1:100:58
1194 15      88006094        rs7165944       A       G       .       PASS    AA=A;DP=106     GT:GQ:DP        0/1:19:26       0/1:64:15       0/1:100:67
1195 5       21052959        rs7717426       A       G       .       PASS    AA=G;DP=87      GT:GQ:DP        0/1:20:14       0/1:19:19       0/1:100:54
1196 8       91798011        .       C       T       .       PASS    AA=C;DP=104     GT:GQ:DP        0/1:22:12       0/1:91:22       0/1:100:71
1197 11      99383033        rs12277376      C       G       .       PASS    AA=C;DP=93      GT:GQ:DP        0/1:22:16       0/1:82:26       0/1:100:51
1198 10      91739092        rs7077721       C       T       .       PASS    AA=C;DP=120     GT:GQ:DP        0/1:22:25       0/1:79:20       0/1:100:31
1199 15      40011968        rs1648860       G       T       .       PASS    AA=G;DP=157     GT:GQ:DP        0/1:24:33       0/1:100:26      0/1:100:53
1200 1       31450874        .       C       T       .       PASS    AA=C;DP=87      GT:GQ:DP        0/1:25:18       0/1:15:12       0/1:100:58
1201 1       145110179       rs1348316       A       G       .       PASS    AA=G;DP=100;HM2;HM3     GT:GQ:DP        0/1:25:20       0/1:71:16       0/1:100:62
1202 4       3457035 rs2006791       A       G       .       PASS    AA=N;DP=105     GT:GQ:DP        0/1:25:25       0/1:21:9        0/1:100:68
1203 10      83468265        .       G       T       .       PASS    AA=g;DP=90      GT:GQ:DP        0/1:27:19       0/1:7:22        0/1:100:48
1204 2       109354647       rs11680644      C       G       .       PASS    AA=G;DP=114     GT:GQ:DP        0/1:28:24       0/1:46:23       0/1:100:67
1205 15      88402268        rs1506941       A       G       .       PASS    AA=G;DP=103     GT:GQ:DP        0/1:29:20       0/1:37:14       0/1:100:69
1206 3       10063878        .       C       T       .       PASS    AA=C;DP=122     GT:GQ:DP        0/1:29:31       0/1:100:32      0/1:74:60
1207 4       16584899        rs34394334      A       G       .       PASS    AA=G;DP=77      GT:GQ:DP        0/1:30:16       0/1:24:16       0/1:100:42
1208 12      106150204       rs7964938       C       T       .       PASS    AA=C;DP=101     GT:GQ:DP        0/1:30:21       0/1:98:26       0/1:100:42
1209 2       71029224        rs12620379      A       G       .       PASS    AA=A;DP=99      GT:GQ:DP        0/1:30:24       0/1:76:17       0/1:100:57
1210 3       97837047        rs4405933       C       G       .       PASS    AA=G;DP=102     GT:GQ:DP        0/1:30:24       0/1:89:25       0/1:100:54
1211 5       141860262       rs17098760      C       G       .       PASS    AA=G;DP=145     GT:GQ:DP        0/1:30:31       0/1:79:37       0/1:100:80
1212 3       79745445        rs4680965       A       G       .       PASS    AA=A;DP=94      GT:GQ:DP        0/1:31:15       0/1:45:21       0/1:100:59
1213 4       32740325        .       A       G       .       PASS    AA=A;DP=93      GT:GQ:DP        0/1:31:16       0/1:94:15       0/1:100:61
1214 7       95138692        rs854082        A       G       .       PASS    AA=A;DP=99      GT:GQ:DP        0/1:31:20       0/1:35:22       0/1:100:43
1215 1       229596721       rs11582413      C       G       .       PASS    AA=C;DP=103     GT:GQ:DP        0/1:31:23       0/1:42:14       0/1:100:68
1216 20      60864799        rs3848675       A       G       .       PASS    AA=A;DP=81      GT:GQ:DP        0/1:33:24       0/1:39:11       0/1:100:46
1217 5       29462844        .       A       G       .       PASS    AA=a;DP=139     GT:GQ:DP        0/1:34:37       0/1:57:29       0/1:100:73
1218 18      6605783 rs8089344       C       G       .       PASS    AA=C;DP=74      GT:GQ:DP        0/1:35:18       0/1:61:19       0/1:100:27
1219 11      22410780        rs2593674       C       G       .       PASS    AA=C;DP=116     GT:GQ:DP        0/1:35:26       0/1:46:20       0/1:100:70
1220 15      24843964        .       A       G       .       PASS    AA=A;DP=71      GT:GQ:DP        0/1:36:14       0/1:60:16       0/1:100:41
1221 2       192144803       .       A       T       .       PASS    AA=a;DP=62      GT:GQ:DP        0/1:36:16       0/1:30:23       0/1:76:17
1222 11      48296682        .       A       C       .       PASS    AA=a;DP=133     GT:GQ:DP        0/1:36:19       0/1:50:33       0/1:100:83
1223 13      103085396       rs1984043       A       G       .       PASS    AA=G;DP=77      GT:GQ:DP        0/1:37:10       0/1:84:13       0/1:100:53
1224 8       89050656        rs1477915       A       G       .       PASS    AA=G;DP=87      GT:GQ:DP        0/1:37:17       0/1:70:17       0/1:100:53
1225 15      95309410        rs7165723       C       T       .       PASS    AA=T;DP=80      GT:GQ:DP        0/1:37:21       0/1:34:11       0/1:100:48
1226 4       116730125       .       C       T       .       PASS    AA=C;DP=96      GT:GQ:DP        0/1:37:22       0/1:78:19       0/1:100:56
1227 2       29767630        rs10177723      A       G       .       PASS    AA=G;DP=140     GT:GQ:DP        0/1:37:26       0/1:100:31      0/1:100:83
1228 2       4841616 rs4355128       C       T       .       PASS    AA=c;DP=103     GT:GQ:DP        0/1:38:18       0/1:100:26      0/1:100:58
1229 1       5976242 rs11120990      A       G       .       PASS    AA=A;DP=104     GT:GQ:DP        0/1:38:23       0/1:21:12       0/1:100:67
1230 7       127665020       rs791614        A       G       .       PASS    AA=G;DP=121     GT:GQ:DP        0/1:38:29       0/1:94:24       0/1:100:70
1231 4       116611378       rs7677618       G       T       .       PASS    AA=T;DP=67      GT:GQ:DP        0/1:39:15       0/1:100:15      0/1:100:37
1232 3       150239216       rs7611297       C       G       .       PASS    AA=C;DP=83      GT:GQ:DP        0/1:39:21       0/1:27:13       0/1:100:39
1233 5       73538940        rs10061061      C       T       .       PASS    AA=C;DP=88      GT:GQ:DP        0/1:39:24       0/1:91:16       0/1:100:48
1234 1       53292052        rs60537900      C       T       .       PASS    AA=c;DP=104     GT:GQ:DP        0/1:39:27       0/1:45:19       0/1:100:49
1235 X       98869939        .       C       T       .       PASS    AA=C;DP=79      GT:GQ:DP        0/1:3:8 0/1:26:12       0/1:100:36
1236 9       77422417        rs1328572       A       G       .       PASS    AA=A;DP=101     GT:GQ:DP        0/1:40:23       0/1:100:18      0/1:100:59
1237 19      15970938        rs10405010      C       T       .       PASS    AA=t;DP=92      GT:GQ:DP        0/1:40:23       0/1:33:14       0/1:100:54
1238 1       3776605 rs12740232      C       T       .       PASS    AA=C;DP=112     GT:GQ:DP        0/1:40:29       0/1:45:11       0/1:100:70
1239 5       85007267        .       C       T       .       PASS    AA=C;DP=57      GT:GQ:DP        0/1:41:16       0/1:38:7        0/1:75:27
1240 17      73450715        rs4789519       A       C       .       PASS    AA=A;DP=120     GT:GQ:DP        0/1:41:22       0/1:100:26      0/1:100:72
1241 5       78362085        rs7716612       C       T       .       PASS    AA=C;DP=94      GT:GQ:DP        0/1:41:28       0/1:44:16       0/1:100:45
1242 13      82490649        rs2101673       A       G       .       PASS    AA=G;DP=122     GT:GQ:DP        0/1:42:20       0/1:100:19      0/1:100:83
1243 11      7002584 rs1038837       A       C       .       PASS    AA=C;DP=71      GT:GQ:DP        0/1:43:19       0/1:49:11       0/1:100:44
1244 6       92233384        rs10806445      A       C       .       PASS    AA=C;DP=110     GT:GQ:DP        0/1:43:20       0/1:100:27      0/1:100:63
1245 17      56735370        rs3853830       A       G       .       PASS    AA=A;DP=119     GT:GQ:DP        0/1:43:22       0/1:81:23       0/1:100:74
1246 2       239804721       rs554946        G       T       .       PASS    AA=T;DP=117     GT:GQ:DP        0/1:43:26       0/1:32:21       0/1:100:71
1247 13      81322261        rs7323365       A       G       .       PASS    AA=A;DP=66      GT:GQ:DP        0/1:44:12       0/1:77:13       0/1:100:32
1248 11      99002022        rs1690817       A       G       .       PASS    AA=G;DP=104     GT:GQ:DP        0/1:44:22       0/1:33:19       0/1:100:62
1249 5       21098784        rs10069170      A       C       .       PASS    AA=A;DP=120     GT:GQ:DP        0/1:44:23       0/1:100:25      0/1:100:71
1250 10      105900211       rs703333        A       G       .       PASS    AA=G;DP=158     GT:GQ:DP        0/1:44:34       0/1:86:27       0/1:100:58
1251 4       191077079       .       G       T       .       PASS    AA=g;DP=152     GT:GQ:DP        0/1:44:38       0/1:100:34      0/1:100:69
1252 8       31692107        rs13268778      A       G       .       PASS    AA=A;DP=87      GT:GQ:DP        0/1:45:21       0/1:58:23       0/1:100:43
1253 2       230763553       rs4973293       G       T       .       PASS    AA=G;DP=74      GT:GQ:DP        0/1:45:21       0/1:72:18       0/1:100:38
1254 6       54111303        rs1321884       A       G       .       PASS    AA=A;DP=118     GT:GQ:DP        0/1:45:23       0/1:30:18       0/1:100:34
1255 3       118437994       rs9868230       C       T       .       PASS    AA=C;DP=100     GT:GQ:DP        0/1:45:24       0/1:91:21       0/1:100:55
1256 7       126843278       rs9656363       C       T       .       PASS    AA=C;DP=109     GT:GQ:DP        0/1:45:25       0/1:51:21       0/1:100:63
1257 1       55219858        rs1549564       A       G       .       PASS    AA=N;DP=111     GT:GQ:DP        0/1:45:30       0/1:10:15       0/1:100:67
1258 13      18543280        .       A       G       .       PASS    AA=a;DP=169     GT:GQ:DP        0/1:45:47       0/1:53:24       0/1:100:90
1259 13      71518276        rs2247888       A       G       .       PASS    AA=A;DP=68      GT:GQ:DP        0/1:46:10       0/1:92:17       0/1:100:26
1260 1       80321639        rs6683765       C       G       .       PASS    AA=C;DP=68      GT:GQ:DP        0/1:46:12       0/1:100:21      0/1:100:24
1261 5       60523924        rs295544        A       G       .       PASS    AA=G;DP=115     GT:GQ:DP        0/1:46:21       0/1:100:23      0/1:100:70
1262 2       240803735       rs885524        A       G       .       PASS    AA=G;DP=127     GT:GQ:DP        0/1:46:26       0/1:41:14       0/1:100:89
1263 5       2088812 rs58974183      C       T       .       PASS    AA=C;DP=120     GT:GQ:DP        0/1:46:31       0/1:64:20       0/1:100:67
1264 14      21084164        rs12891053      A       G       .       PASS    AA=A;DP=136     GT:GQ:DP        0/1:46:33       0/1:23:24       0/1:100:77
1265 6       43738733        rs7751728       A       G       .       PASS    AA=G;DP=112     GT:GQ:DP        0/1:46:38       0/1:41:17       0/1:100:58
1266 16      84676358        rs58044441      G       T       .       PASS    AA=G;DP=86      GT:GQ:DP        0/1:47:27       0/1:67:16       0/1:100:35
1267 13      59010761        rs9598021       A       G       .       PASS    AA=G;DP=137     GT:GQ:DP        0/1:47:34       0/1:83:13       0/1:100:91
1268 3       1284898 rs3772327       C       T       .       PASS    AA=C;DP=91      GT:GQ:DP        0/1:48:15       0/1:100:18      0/1:100:59
1269 11      123971240       rs7939816       C       T       .       PASS    AA=T;DP=110     GT:GQ:DP        0/1:48:16       0/1:100:22      0/1:100:73
1270 13      88004286        rs61961068      A       G       .       PASS    AA=A;DP=79      GT:GQ:DP        0/1:48:16       0/1:70:12       0/1:100:49
1271 10      122774992       rs11199716      C       T       .       PASS    AA=C;DP=114     GT:GQ:DP        0/1:48:24       0/1:29:17       0/1:100:72
1272 9       2396635 rs10119481      C       G       .       PASS    AA=C;DP=100     GT:GQ:DP        0/1:48:26       0/1:47:11       0/1:100:51
1273 21      43603592        rs2838283       C       T       .       PASS    AA=C;DP=107     GT:GQ:DP        0/1:48:27       0/1:16:15       0/1:100:64
1274 9       29251935        rs7852004       A       G       .       PASS    AA=G;DP=125     GT:GQ:DP        0/1:48:29       0/1:97:23       0/1:100:73
1275 6       156300888       rs9371406       C       T       .       PASS    AA=C;DP=131     GT:GQ:DP        0/1:48:39       0/1:77:14       0/1:91:78
1276 4       12369989        .       A       G       .       PASS    AA=A;DP=68      GT:GQ:DP        0/1:49:17       0/1:34:13       0/1:100:32
1277 7       11568959        rs425   C       T       .       PASS    AA=T;DP=84      GT:GQ:DP        0/1:49:20       0/1:85:17       0/1:100:48
1278 2       48340711        rs11695923      C       T       .       PASS    AA=T;DP=136     GT:GQ:DP        0/1:49:21       0/1:83:26       0/1:100:41
1279 22      48064757        rs17000753      A       G       .       PASS    AA=A;DP=127     GT:GQ:DP        0/1:49:22       0/1:77:22       0/1:100:72
1280 4       113895525       .       A       G       .       PASS    AA=A;DP=101     GT:GQ:DP        0/1:49:25       0/1:85:17       0/1:100:61
1281 5       140183616       rs4141841       C       T       .       PASS    AA=C;DP=110     GT:GQ:DP        0/1:49:37       0/1:42:15       0/1:100:56
1282 18      39002939        rs11873915      A       G       .       PASS    AA=a;DP=99      GT:GQ:DP        0/1:4:12        0/1:35:31       0/1:100:42
1283 2       154661974       .       A       G       .       PASS    AA=A;DP=97      GT:GQ:DP        0/1:4:15        0/1:94:13       0/1:100:66
1284 4       21120060        rs13131360      G       T       .       PASS    AA=G;DP=100     GT:GQ:DP        0/1:4:21        0/1:94:21       0/1:100:59
1285 6       57365729        .       C       G       .       PASS    AA=C;DP=204     GT:GQ:DP        0/1:4:43        0/1:100:38      0/1:55:83
1286 X       63873876        rs9943027       C       T       .       PASS    AA=C;DP=77      GT:GQ:DP        0/1:4:5 0/1:22:18       0/1:88:23
1287 10      130045871       rs57877255      A       G       .       PASS    AA=A;DP=83      GT:GQ:DP        0/1:50:20       0/1:15:14       0/1:100:50
1288 5       124351848       rs11949937      A       C       .       PASS    AA=A;DP=110     GT:GQ:DP        0/1:50:22       0/1:97:19       0/1:100:56
1289 3       42051033        .       C       T       .       PASS    AA=C;DP=111     GT:GQ:DP        0/1:50:24       0/1:43:16       0/1:100:69
1290 4       47954907        rs2353295       A       G       .       PASS    AA=A;DP=115     GT:GQ:DP        0/1:50:27       0/1:95:18       0/1:100:70
1291 2       79662   rs6720561       C       T       .       PASS    AA=N;DP=67      GT:GQ:DP        0/1:50:9        0/1:67:12       0/1:100:45
1292 13      24972801        rs7987762       C       G       .       PASS    AA=G;DP=91      GT:GQ:DP        0/1:51:18       0/1:26:17       0/1:100:53
1293 6       96549993        rs633244        A       G       .       PASS    AA=A;DP=99      GT:GQ:DP        0/1:51:21       0/1:79:20       0/1:100:58
1294 17      76046128        rs8068613       A       G       .       PASS    AA=G;DP=126     GT:GQ:DP        0/1:51:23       0/1:100:21      0/1:100:82
1295 1       229467528       rs849714        A       G       .       PASS    AA=G;DP=107     GT:GQ:DP        0/1:51:23       0/1:52:21       0/1:100:65
1296 16      7112402 .       G       T       .       PASS    AA=G;DP=100     GT:GQ:DP        0/1:52:14       0/1:16:14       0/1:100:73
1297 1       38989448        rs6657245       A       G       .       PASS    AA=G;DP=71      GT:GQ:DP        0/1:52:16       0/1:41:19       0/1:100:31
1298 7       12532632        rs10251130      A       G       .       PASS    AA=A;DP=70      GT:GQ:DP        0/1:53:13       0/1:97:22       0/1:100:28
1299 6       81313424        rs57213893      G       T       .       PASS    AA=G;DP=81      GT:GQ:DP        0/1:53:15       0/1:86:15       0/1:100:51
1300 5       109819408       rs57353550      A       G       .       PASS    AA=A;DP=84      GT:GQ:DP        0/1:53:17       0/1:100:19      0/1:100:48
1301 6       55535668        rs10807496      A       G       .       PASS    AA=G;DP=107     GT:GQ:DP        0/1:53:18       0/1:100:30      0/1:100:59
1302 8       25531359        rs13280167      A       G       .       PASS    AA=G;DP=75      GT:GQ:DP        0/1:53:29       0/1:78:11       0/1:100:29
1303 5       27952040        rs1991501       C       G       .       PASS    AA=G;DP=75      GT:GQ:DP        0/1:54:12       0/1:71:17       0/1:100:46
1304 4       138912820       rs6822153       C       T       .       PASS    AA=C;DP=66      GT:GQ:DP        0/1:54:14       0/1:89:24       0/1:100:30
1305 14      45047939        rs56315017      A       G       .       PASS    AA=G;DP=106     GT:GQ:DP        0/1:54:21       0/1:100:25      0/1:100:57
1306 2       53399362        rs10167230      C       G       .       PASS    AA=g;DP=126     GT:GQ:DP        0/1:54:21       0/1:100:25      0/1:100:68
1307 10      74427256        rs7078081       C       T       .       PASS    AA=T;DP=90      GT:GQ:DP        0/1:54:23       0/1:40:20       0/1:100:48
1308 6       31153553        rs2523860       C       G       .       PASS    AA=c;DP=129     GT:GQ:DP        0/1:54:24       0/1:90:23       0/1:100:79
1309 16      7445030 rs9936248       A       C       .       PASS    AA=C;DP=113     GT:GQ:DP        0/1:54:26       0/1:100:22      0/1:100:68
1310 11      20056837        .       C       G       .       PASS    AA=C;DP=119     GT:GQ:DP        0/1:54:27       0/1:64:30       0/1:100:62
1311 6       84050288        rs1170504       A       C       .       PASS    AA=C;DP=110     GT:GQ:DP        0/1:54:30       0/1:61:17       0/1:100:60
1312 11      83248462        rs10898162      A       C       .       PASS    AA=A;DP=84      GT:GQ:DP        0/1:55:16       0/1:22:8        0/1:100:60
1313 1       46146746        rs7526678       A       G       .       PASS    AA=A;DP=84;HM2  GT:GQ:DP        0/1:55:18       0/1:11:8        0/1:100:58
1314 7       149375464       rs34447086      A       G       .       PASS    AA=G;DP=74      GT:GQ:DP        0/1:55:25       0/1:3:7 0/1:100:30
1315 2       201238985       rs35778058      A       T       .       PASS    AA=T;DP=114     GT:GQ:DP        0/1:55:29       0/1:100:19      0/1:100:54
1316 4       57326805        rs7658459       A       G       .       PASS    AA=A;DP=95      GT:GQ:DP        0/1:55:29       0/1:48:17       0/1:100:49
1317 5       20827033        .       A       C       .       PASS    AA=A;DP=173     GT:GQ:DP        0/1:55:30       0/1:100:39      0/1:100:52
1318 3       149972072       rs1586836       C       G       .       PASS    AA=C;DP=91      GT:GQ:DP        0/1:55:31       0/1:74:20       0/1:100:41
1319 12      30123313        rs1554432       C       T       .       PASS    AA=T;DP=78      GT:GQ:DP        0/1:55:8        0/1:92:15       0/1:100:54
1320 13      71774359        rs340575        A       C       .       PASS    AA=C;DP=86      GT:GQ:DP        0/1:56:16       0/1:100:19      0/1:100:49
1321 2       194881824       rs10208816      C       G       .       PASS    AA=c;DP=100     GT:GQ:DP        0/1:56:17       0/1:100:27      0/1:100:50
1322 5       40493649        rs6874477       C       T       .       PASS    AA=C;DP=84      GT:GQ:DP        0/1:56:17       0/1:61:16       0/1:100:39
1323 7       134880971       rs7782989       C       T       .       PASS    AA=C;DP=98      GT:GQ:DP        0/1:56:18       0/1:12:18       0/1:100:61
1324 15      96642821        rs11631964      A       G       .       PASS    AA=A;DP=107     GT:GQ:DP        0/1:56:26       0/1:15:17       0/1:100:64
1325 18      11495086        rs9303735       C       T       .       PASS    AA=C;DP=107     GT:GQ:DP        0/1:56:29       0/1:68:17       0/1:100:48
1326 20      41890653        .       A       G       .       PASS    AA=A;DP=150     GT:GQ:DP        0/1:56:41       0/1:73:20       0/1:100:48
1327 6       102442933       rs2051445       G       T       .       PASS    AA=G;DP=103     GT:GQ:DP        0/1:57:13       0/1:100:26      0/1:100:60
1328 3       189823767       rs9817339       C       T       .       PASS    AA=T;DP=73      GT:GQ:DP        0/1:57:16       0/1:61:16       0/1:100:42
1329 1       73920481        rs4364822       A       G       .       PASS    AA=N;DP=72      GT:GQ:DP        0/1:57:18       0/1:85:17       0/1:100:28
1330 2       105431938       rs884876        A       G       .       PASS    AA=G;DP=101     GT:GQ:DP        0/1:57:20       0/1:46:14       0/1:100:60
1331 21      32423908        .       C       T       .       PASS    AA=C;DP=131     GT:GQ:DP        0/1:57:28       0/1:100:24      0/1:100:80
1332 3       177440157       rs17689472      A       G       .       PASS    AA=A;DP=94      GT:GQ:DP        0/1:58:11       0/1:100:22      0/1:100:59
1333 18      11932412        rs8098437       C       T       .       PASS    AA=c;DP=73      GT:GQ:DP        0/1:58:15       0/1:42:14       0/1:100:45
1334 12      105247515       rs11112941      C       T       .       PASS    AA=T;DP=108     GT:GQ:DP        0/1:58:21       0/1:84:19       0/1:100:71
1335 1       15219950        rs10927632      A       G       .       PASS    AA=G;DP=94;HM2;HM3      GT:GQ:DP        0/1:58:23       0/1:76:14       0/1:100:57
1336 11      97896375        rs12276745      C       T       .       PASS    AA=c;DP=84      GT:GQ:DP        0/1:59:14       0/1:86:16       0/1:100:54
1337 1       153166771       .       A       C       .       PASS    AA=A;DP=69      GT:GQ:DP        0/1:59:16       0/1:32:13       0/1:14:39
1338 17      76918399        rs6565558       A       G       .       PASS    AA=A;DP=97      GT:GQ:DP        0/1:59:18       0/1:11:9        0/1:100:69
1339 3       3842778 rs13086561      A       G       .       PASS    AA=A;DP=109     GT:GQ:DP        0/1:59:19       0/1:100:22      0/1:100:67
1340 19      52726310        .       G       T       .       PASS    AA=G;DP=114     GT:GQ:DP        0/1:5:33        0/1:41:28       0/1:100:44
1341 1       73570515        rs2145784       A       T       .       PASS    AA=T;DP=69      GT:GQ:DP        0/1:60:12       0/1:100:17      0/1:100:41
1342 2       212885476       rs6721859       A       G       .       PASS    AA=A;DP=67      GT:GQ:DP        0/1:60:14       0/1:63:18       0/1:100:23
1343 5       143565300       rs3797084       C       T       .       PASS    AA=C;DP=86      GT:GQ:DP        0/1:60:17       0/1:62:9        0/1:100:55
1344 7       138697369       rs28666017      A       T       .       PASS    AA=A;DP=73      GT:GQ:DP        0/1:60:18       0/1:95:14       0/1:100:26
1345 10      21288965        rs45549131      A       G       .       PASS    AA=A;DP=66      GT:GQ:DP        0/1:60:19       0/1:100:23      0/1:97:14
1346 7       68193915        .       C       T       .       PASS    AA=C;DP=115     GT:GQ:DP        0/1:60:21       0/1:100:19      0/1:100:76
1347 9       96852161        rs4743982       A       G       .       PASS    AA=A;DP=121     GT:GQ:DP        0/1:60:24       0/1:100:24      0/1:100:76
1348 1       67526096        rs1495965       C       T       .       PASS    AA=C;DP=116;HM2;HM3     GT:GQ:DP        0/1:60:25       0/1:100:35      0/1:100:58
1349 2       132826714       rs8179750       C       G       .       PASS    AA=c;DP=111     GT:GQ:DP        0/1:60:30       0/1:53:17       0/1:18:46
1350 19      47593245        rs10423959      A       T       .       PASS    AA=N;DP=129     GT:GQ:DP        0/1:61:26       0/1:62:17       0/1:100:86
1351 19      43162493        rs833895        C       T       .       PASS    AA=c;DP=100     GT:GQ:DP        0/1:61:29       0/1:13:19       0/1:100:45
1352 15      68801867        rs28650244      C       T       .       PASS    AA=C;DP=102     GT:GQ:DP        0/1:61:29       0/1:75:22       0/1:100:41
1353 1       151642769       rs6673905       C       T       .       PASS    AA=T;DP=111;HM2 GT:GQ:DP        0/1:61:30       0/1:97:19       0/1:100:64
1354 5       159923892       .       A       T       .       PASS    AA=A;DP=128     GT:GQ:DP        0/1:61:31       0/1:36:22       0/1:100:75
1355 8       3737501 rs4875794       A       C       .       PASS    AA=A;DP=101     GT:GQ:DP        0/1:62:12       0/1:100:28      0/1:100:62
1356 6       24892074        rs9467317       G       T       .       PASS    AA=G;DP=78      GT:GQ:DP        0/1:62:14       0/1:100:21      0/1:100:40
1357 7       41184126        rs29517 A       G       .       PASS    AA=A;DP=92      GT:GQ:DP        0/1:62:15       0/1:71:25       0/1:100:52
1358 21      24587209        rs2226429       C       T       .       PASS    AA=T;DP=89      GT:GQ:DP        0/1:62:19       0/1:69:21       0/1:100:50
1359 10      56673925        rs7068963       G       T       .       PASS    AA=g;DP=99      GT:GQ:DP        0/1:62:20       0/1:100:20      0/1:100:55
1360 13      85041529        rs627851        A       G       .       PASS    AA=G;DP=98      GT:GQ:DP        0/1:62:21       0/1:79:26       0/1:100:50
1361 5       18584986        rs7729062       A       C       .       PASS    AA=a;DP=121     GT:GQ:DP        0/1:62:21       0/1:94:27       0/1:100:66
1362 15      22564288        rs2123683       A       G       .       PASS    AA=N;DP=77      GT:GQ:DP        0/1:63:14       0/1:59:20       0/1:100:43
1363 9       75818964        .       A       G       .       PASS    AA=A;DP=78      GT:GQ:DP        0/1:63:14       0/1:91:14       0/1:100:49
1364 6       24198572        rs1402406       A       G       .       PASS    AA=G;DP=98      GT:GQ:DP        0/1:63:15       0/1:71:14       0/1:100:70
1365 1       224662642       rs7531668       A       T       .       PASS    AA=N;DP=84      GT:GQ:DP        0/1:63:17       0/1:52:9        0/1:100:58
1366 12      83474405        rs7953200       A       G       .       PASS    AA=G;DP=84      GT:GQ:DP        0/1:63:18       0/1:84:15       0/1:100:44
1367 5       133669754       rs17167441      A       T       .       PASS    AA=T;DP=81      GT:GQ:DP        0/1:63:18       0/1:95:16       0/1:100:47
1368 2       80744894        rs12465917      C       T       .       PASS    AA=T;DP=104     GT:GQ:DP        0/1:63:21       0/1:100:30      0/1:100:53
1369 9       137408416       rs58796696      C       T       .       PASS    AA=C;DP=86      GT:GQ:DP        0/1:63:23       0/1:8:12        0/1:100:44
1370 15      75905679        rs7182697       G       T       .       PASS    AA=G;DP=111     GT:GQ:DP        0/1:63:27       0/1:50:18       0/1:100:65
1371 8       2269866 rs4242543       G       T       .       PASS    AA=T;DP=177     GT:GQ:DP        0/1:63:34       0/1:100:39      0/1:100:47
1372 14      82613908        rs2888281       A       T       .       PASS    AA=A;DP=87      GT:GQ:DP        0/1:64:15       0/1:62:14       0/1:100:59
1373 11      113902298       rs2366362       A       G       .       PASS    AA=G;DP=78      GT:GQ:DP        0/1:64:17       0/1:100:25      0/1:100:27
1374 4       4331198 rs28473270      C       T       .       PASS    AA=C;DP=114     GT:GQ:DP        0/1:64:21       0/1:100:24      0/1:100:69
1375 11      76678674        rs10082618      A       T       .       PASS    AA=T;DP=84      GT:GQ:DP        0/1:64:22       0/1:18:7        0/1:100:56
1376 21      41997554        .       A       G       .       PASS    AA=a;DP=105     GT:GQ:DP        0/1:64:22       0/1:55:15       0/1:100:67
1377 14      104005196       .       C       T       .       PASS    AA=C;DP=91      GT:GQ:DP        0/1:64:23       0/1:66:12       0/1:100:56
1378 9       84968061        rs7043147       A       G       .       PASS    AA=A;DP=144     GT:GQ:DP        0/1:64:36       0/1:96:28       0/1:100:80
1379 4       157624707       rs2101588       A       G       .       PASS    AA=A;DP=116     GT:GQ:DP        0/1:65:15       0/1:80:28       0/1:100:72
1380 18      1983290 rs6505989       C       G       .       PASS    AA=G;DP=106     GT:GQ:DP        0/1:65:16       0/1:44:21       0/1:100:69
1381 9       28753390        rs12345538      A       C       .       PASS    AA=a;DP=81      GT:GQ:DP        0/1:65:16       0/1:77:19       0/1:100:45
1382 3       174252974       rs6445094       A       G       .       PASS    AA=G;DP=114     GT:GQ:DP        0/1:65:18       0/1:82:32       0/1:100:64
1383 15      96684671        rs8038591       A       G       .       PASS    AA=A;DP=97      GT:GQ:DP        0/1:65:19       0/1:100:22      0/1:100:55
1384 5       108879584       rs17161881      A       C       .       PASS    AA=A;DP=102     GT:GQ:DP        0/1:65:21       0/1:69:19       0/1:100:62
1385 12      27028455        rs7299682       A       C       .       PASS    AA=C;DP=92      GT:GQ:DP        0/1:65:23       0/1:34:15       0/1:100:54
1386 10      29442950        rs4749397       A       G       .       PASS    AA=a;DP=129     GT:GQ:DP        0/1:65:25       0/1:50:19       0/1:100:41
1387 21      36283464        .       C       T       .       PASS    AA=C;DP=103     GT:GQ:DP        0/1:65:26       0/1:60:16       0/1:100:62
1388 22      35386331        rs6000371       A       G       .       PASS    AA=G;DP=79      GT:GQ:DP        0/1:65:32       0/1:37:13       0/1:100:27
1389 7       158748423       .       A       T       .       PASS    AA=.;DP=96      GT:GQ:DP        0/1:66:19       0/1:68:20       0/1:100:56
1390 20      41107551        rs3091990       A       C       .       PASS    AA=A;DP=96      GT:GQ:DP        0/1:66:22       0/1:65:19       0/1:100:56
1391 1       13671383        rs3013098       A       G       .       PASS    AA=G;DP=121     GT:GQ:DP        0/1:66:25       0/1:77:20       0/1:100:78
1392 13      99948927        rs9518085       C       T       .       PASS    AA=C;DP=124     GT:GQ:DP        0/1:66:28       0/1:100:25      0/1:100:70
1393 3       45043078        rs2301282       A       G       .       PASS    AA=A;DP=127     GT:GQ:DP        0/1:66:31       0/1:54:16       0/1:100:81
1394 2       189422  rs400040        G       T       .       PASS    AA=T;DP=114     GT:GQ:DP        0/1:66:33       0/1:15:15       0/1:100:63
1395 6       57450330        rs13204229      C       T       .       PASS    AA=C;DP=157     GT:GQ:DP        0/1:66:39       0/1:100:41      0/1:100:54
1396 2       195070559       rs2360101       C       T       .       PASS    AA=C;DP=73      GT:GQ:DP        0/1:67:14       0/1:45:9        0/1:100:48
1397 4       41334602        .       A       G       .       PASS    AA=A;DP=100     GT:GQ:DP        0/1:67:15       0/1:100:24      0/1:100:61
1398 9       90747291        rs9410419       A       G       .       PASS    AA=G;DP=123     GT:GQ:DP        0/1:67:17       0/1:16:23       0/1:100:83
1399 4       18603823        rs207392        A       C       .       PASS    AA=C;DP=86      GT:GQ:DP        0/1:67:19       0/1:100:20      0/1:100:48
1400 5       165187014       rs10043418      C       T       .       PASS    AA=C;DP=106     GT:GQ:DP        0/1:67:22       0/1:75:19       0/1:100:64
1401 1       17597354        rs12134662      A       G       .       PASS    AA=A;DP=114     GT:GQ:DP        0/1:67:38       0/1:63:16       0/1:100:60
1402 2       194622448       .       A       G       .       PASS    AA=-;DP=66      GT:GQ:DP        0/1:68:13       0/1:39:16       0/1:100:32
1403 5       72488643        rs7445131       A       G       .       PASS    AA=A;DP=71      GT:GQ:DP        0/1:68:17       0/1:85:19       0/1:100:28
1404 9       110645104       rs12552409      C       T       .       PASS    AA=T;DP=107     GT:GQ:DP        0/1:68:20       0/1:90:18       0/1:100:69
1405 5       85475976        rs12656212      G       T       .       PASS    AA=T;DP=85      GT:GQ:DP        0/1:68:21       0/1:61:13       0/1:100:53
1406 4       89174867        rs2725223       C       T       .       PASS    AA=C;DP=109     GT:GQ:DP        0/1:68:27       0/1:35:26       0/1:100:34
1407 3       30242359        .       A       G       .       PASS    AA=A;DP=117     GT:GQ:DP        0/1:68:30       0/1:100:27      0/1:100:57
1408 13      61477650        .       C       T       .       PASS    AA=C;DP=93      GT:GQ:DP        0/1:69:11       0/1:100:17      0/1:100:65
1409 20      9280263 rs6039444       C       T       .       PASS    AA=T;DP=101     GT:GQ:DP        0/1:69:21       0/1:100:24      0/1:100:58
1410 10      79914974        rs3928165       C       T       .       PASS    AA=T;DP=95      GT:GQ:DP        0/1:69:21       0/1:80:21       0/1:100:53
1411 2       72281996        rs41388 A       G       .       PASS    AA=A;DP=109     GT:GQ:DP        0/1:69:23       0/1:100:24      0/1:100:60
1412 7       6445956 rs7806655       C       T       .       PASS    AA=C;DP=102     GT:GQ:DP        0/1:69:23       0/1:94:15       0/1:100:55
1413 1       1899540 rs6681305       C       T       .       PASS    AA=C;DP=85      GT:GQ:DP        0/1:69:24       0/1:40:9        0/1:100:51
1414 13      77380303        rs17068547      A       G       .       PASS    AA=A;DP=105     GT:GQ:DP        0/1:69:31       0/1:100:22      0/1:100:51
1415 10      6357765 .       A       G       .       PASS    AA=A;DP=123     GT:GQ:DP        0/1:69:35       0/1:82:23       0/1:100:61
1416 12      126968793       .       C       G       .       PASS    AA=-;DP=80      GT:GQ:DP        0/1:6:15        0/1:30:20       0/1:100:39
1417 14      105527594       .       G       T       .       PASS    AA=.;DP=91      GT:GQ:DP        0/1:6:20        0/1:67:14       0/1:84:58
1418 14      46199576        rs1462394       C       T       .       PASS    AA=c;DP=69      GT:GQ:DP        0/1:6:9 0/1:15:12       0/1:100:48
1419 8       15318096        rs1390058       A       T       .       PASS    AA=a;DP=89      GT:GQ:DP        0/1:70:17       0/1:100:23      0/1:100:48
1420 15      23774687        rs6576496       A       G       .       PASS    AA=G;DP=88      GT:GQ:DP        0/1:70:17       0/1:4:19        0/1:100:52
1421 6       81668665        rs7743382       C       T       .       PASS    AA=T;DP=93      GT:GQ:DP        0/1:70:20       0/1:63:24       0/1:100:50
1422 10      61531241        rs12254725      C       T       .       PASS    AA=C;DP=112     GT:GQ:DP        0/1:70:20       0/1:84:30       0/1:100:62
1423 2       118424754       rs7578387       C       T       .       PASS    AA=C;DP=121     GT:GQ:DP        0/1:70:21       0/1:25:20       0/1:100:80
1424 5       109767543       rs58270372      G       T       .       PASS    AA=G;DP=100     GT:GQ:DP        0/1:70:23       0/1:100:23      0/1:100:54
1425 16      58130345        .       A       C       .       PASS    AA=C;DP=122     GT:GQ:DP        0/1:70:27       0/1:100:27      0/1:100:68
1426 7       151617544       rs34384855      C       T       .       PASS    AA=C;DP=109     GT:GQ:DP        0/1:70:34       0/1:35:30       0/1:10:46
1427 11      56227316        rs12808258      G       T       .       PASS    AA=G;DP=162     GT:GQ:DP        0/1:70:36       0/1:89:36       0/1:100:81
1428 2       128487564       rs4392195       C       G       .       PASS    AA=G;DP=126     GT:GQ:DP        0/1:70:37       0/1:100:25      0/1:100:67
1429 4       34550641        rs1615366       A       T       .       PASS    AA=T;DP=68      GT:GQ:DP        0/1:71:10       0/1:73:18       0/1:100:38
1430 7       142304016       rs4987555       C       T       .       PASS    AA=C;DP=89      GT:GQ:DP        0/1:71:21       0/1:17:18       0/1:100:49
1431 2       199764217       rs7573661       A       G       .       PASS    AA=A;DP=70      GT:GQ:DP        0/1:71:22       0/1:100:20      0/1:88:17
1432 1       85482503        rs7531640       C       T       .       PASS    AA=T;DP=113;HM2;HM3     GT:GQ:DP        0/1:71:22       0/1:89:22       0/1:100:71
1433 11      1567788 rs6578539       C       T       .       PASS    AA=C;DP=130     GT:GQ:DP        0/1:71:23       0/1:40:25       0/1:100:83
1434 1       55695265        rs12749404      A       G       .       PASS    AA=A;DP=116     GT:GQ:DP        0/1:71:23       0/1:73:19       0/1:100:74
1435 11      122527293       rs11219031      A       G       .       PASS    AA=G;DP=130     GT:GQ:DP        0/1:71:23       0/1:78:21       0/1:100:85
1436 2       166525584       rs28895971      C       G       .       PASS    AA=G;DP=109     GT:GQ:DP        0/1:71:24       0/1:6:16        0/1:100:68
1437 6       113130095       rs1378699       C       T       .       PASS    AA=C;DP=117     GT:GQ:DP        0/1:71:25       0/1:33:13       0/1:100:79
1438 10      119980629       rs7908418       A       G       .       PASS    AA=A;DP=70      GT:GQ:DP        0/1:72:17       0/1:22:11       0/1:100:42
1439 11      42095090        rs7949634       C       T       .       PASS    AA=C;DP=108     GT:GQ:DP        0/1:72:22       0/1:31:14       0/1:100:69
1440 3       102620192       rs4508750       A       G       .       PASS    AA=A;DP=105     GT:GQ:DP        0/1:72:24       0/1:51:25       0/1:100:56
1441 3       154287999       rs528581        A       C       .       PASS    AA=A;DP=125     GT:GQ:DP        0/1:72:26       0/1:100:20      0/1:100:40
1442 20      48675014        rs6020643       G       T       .       PASS    AA=G;DP=107     GT:GQ:DP        0/1:72:30       0/1:15:16       0/1:100:62
1443 6       124320447       .       C       T       .       PASS    AA=C;DP=105     GT:GQ:DP        0/1:72:31       0/1:82:20       0/1:100:54
1444 5       98528528        rs10068334      A       G       .       PASS    AA=A;DP=75      GT:GQ:DP        0/1:73:12       0/1:44:14       0/1:100:49
1445 4       12285305        rs7697553       A       C       .       PASS    AA=A;DP=82      GT:GQ:DP        0/1:73:15       0/1:61:18       0/1:100:51
1446 17      8069885 rs8078338       A       G       .       PASS    AA=A;DP=80      GT:GQ:DP        0/1:73:16       0/1:55:9        0/1:100:43
1447 3       980938  .       C       T       .       PASS    AA=C;DP=117     GT:GQ:DP        0/1:73:17       0/1:81:19       0/1:100:81
1448 9       29131394        rs10812994      A       T       .       PASS    AA=A;DP=112     GT:GQ:DP        0/1:73:20       0/1:49:18       0/1:100:65
1449 2       129222125       rs3907873       A       G       .       PASS    AA=G;DP=114     GT:GQ:DP        0/1:73:21       0/1:64:23       0/1:100:70
1450 2       205544318       rs236837        A       T       .       PASS    AA=T;DP=110     GT:GQ:DP        0/1:73:22       0/1:60:23       0/1:100:67
1451 4       132507931       rs2136131       A       G       .       PASS    AA=G;DP=101     GT:GQ:DP        0/1:73:22       0/1:72:20       0/1:100:57
1452 3       6772607 rs9855323       A       G       .       PASS    AA=N;DP=96      GT:GQ:DP        0/1:73:23       0/1:32:23       0/1:100:39
1453 18      10554051        rs7234815       C       T       .       PASS    AA=C;DP=128     GT:GQ:DP        0/1:73:25       0/1:79:28       0/1:100:79
1454 20      35232986        .       C       T       .       PASS    AA=c;DP=122     GT:GQ:DP        0/1:73:28       0/1:100:28      0/1:100:74
1455 2       221433082       rs2444838       A       G       .       PASS    AA=A;DP=141     GT:GQ:DP        0/1:73:29       0/1:100:27      0/1:100:41
1456 21      46809572        .       C       T       .       PASS    AA=T;DP=132     GT:GQ:DP        0/1:73:35       0/1:45:21       0/1:100:75
1457 1       203075200       rs16854508      C       T       .       PASS    AA=C;DP=131;HM2 GT:GQ:DP        0/1:73:39       0/1:36:19       0/1:100:72
1458 11      48304667        .       A       C       .       PASS    AA=a;DP=172     GT:GQ:DP        0/1:73:47       0/1:87:43       0/1:100:78
1459 8       83864388        rs999463        A       G       .       PASS    AA=G;DP=94      GT:GQ:DP        0/1:74:19       0/1:100:17      0/1:100:58
1460 18      3736870 rs9962409       G       T       .       PASS    AA=G;DP=105     GT:GQ:DP        0/1:74:22       0/1:100:21      0/1:100:60
1461 13      24107409        rs1998834       C       T       .       PASS    AA=C;DP=125     GT:GQ:DP        0/1:74:23       0/1:93:30       0/1:100:72
1462 1       73192245        rs4584349       C       T       .       PASS    AA=C;DP=92;HM2  GT:GQ:DP        0/1:74:26       0/1:93:16       0/1:100:52
1463 13      37103422        rs41473348      C       T       .       PASS    AA=C;DP=103     GT:GQ:DP        0/1:74:27       0/1:31:13       0/1:100:67
1464 20      10031191        rs2327239       A       T       .       PASS    AA=A;DP=112     GT:GQ:DP        0/1:74:31       0/1:78:20       0/1:100:63
1465 10      10959647        rs11256887      A       G       .       PASS    AA=A;DP=137     GT:GQ:DP        0/1:74:32       0/1:100:28      0/1:100:77
1466 5       3132525 .       C       T       .       PASS    AA=C;DP=99      GT:GQ:DP        0/1:74:32       0/1:7:10        0/1:100:57
1467 6       6590725 rs4960226       A       G       .       PASS    AA=a;DP=151     GT:GQ:DP        0/1:74:41       0/1:77:13       0/1:100:98
1468 18      33736209        rs4799469       A       C       .       PASS    AA=C;DP=64      GT:GQ:DP        0/1:75:12       0/1:94:18       0/1:100:27
1469 4       112316799       rs13108741      C       T       .       PASS    AA=C;DP=103     GT:GQ:DP        0/1:75:14       0/1:100:27      0/1:100:61
1470 9       493175  rs12002163      C       G       .       PASS    AA=C;DP=99      GT:GQ:DP        0/1:75:16       0/1:100:20      0/1:100:64
1471 1       181972898       rs10911427      A       G       .       PASS    AA=A;DP=107     GT:GQ:DP        0/1:75:17       0/1:87:23       0/1:100:68
1472 7       141762024       .       A       G       .       PASS    AA=A;DP=101     GT:GQ:DP        0/1:75:18       0/1:100:23      0/1:100:63
1473 5       89681593        rs11959160      A       C       .       PASS    AA=A;DP=100     GT:GQ:DP        0/1:75:18       0/1:90:18       0/1:100:46
1474 6       133712568       rs1886982       A       G       .       PASS    AA=G;DP=129     GT:GQ:DP        0/1:75:23       0/1:100:30      0/1:100:80
1475 19      62156824        rs12052176      A       G       .       PASS    AA=G;DP=97      GT:GQ:DP        0/1:75:23       0/1:73:19       0/1:100:55
1476 5       55628566        rs4700222       C       T       .       PASS    AA=c;DP=102     GT:GQ:DP        0/1:75:28       0/1:29:15       0/1:100:58
1477 5       74496024        .       C       T       .       PASS    AA=C;DP=111     GT:GQ:DP        0/1:75:29       0/1:100:34      0/1:100:48
1478 1       153791782       .       C       T       .       PASS    AA=T;DP=94      GT:GQ:DP        0/1:75:30       0/1:87:31       0/1:100:23
1479 2       237363626       rs56792804      C       T       .       PASS    AA=C;DP=116     GT:GQ:DP        0/1:75:34       0/1:84:25       0/1:100:58
1480 3       11745135        rs6782912       C       T       .       PASS    AA=c;DP=132     GT:GQ:DP        0/1:75:36       0/1:4:16        0/1:100:82
1481 6       97771706        rs13195596      A       G       .       PASS    AA=A;DP=71      GT:GQ:DP        0/1:76:13       0/1:68:10       0/1:100:48
1482 5       30357172        rs4608933       C       T       .       PASS    AA=C;DP=86      GT:GQ:DP        0/1:76:14       0/1:56:20       0/1:100:53
1483 4       59925240        rs2137020       C       T       .       PASS    AA=c;DP=119     GT:GQ:DP        0/1:76:19       0/1:100:29      0/1:100:69
1484 13      103727396       .       A       G       .       PASS    AA=G;DP=70      GT:GQ:DP        0/1:76:20       0/1:53:19       0/1:100:22
1485 6       70490515        rs1902651       A       G       .       PASS    AA=A;DP=93      GT:GQ:DP        0/1:76:24       0/1:77:14       0/1:100:55
1486 16      52911221        rs58719980      A       G       .       PASS    AA=A;DP=140     GT:GQ:DP        0/1:76:25       0/1:67:13       0/1:100:58
1487 20      60993136        .       C       T       .       PASS    AA=c;DP=102     GT:GQ:DP        0/1:76:35       0/1:40:16       0/1:100:45
1488 16      59669909        rs7197135       A       C       .       PASS    AA=A;DP=68      GT:GQ:DP        0/1:77:14       0/1:63:18       0/1:100:29
1489 1       239429475       rs2815876       C       T       .       PASS    AA=T;DP=93;HM2;HM3      GT:GQ:DP        0/1:77:15       0/1:92:12       0/1:100:65
1490 14      105671477       .       A       G       .       PASS    AA=.;DP=97      GT:GQ:DP        0/1:77:20       0/1:53:14       0/1:82:64
1491 6       37440535        .       A       G       .       PASS    AA=A;DP=98      GT:GQ:DP        0/1:77:23       0/1:66:22       0/1:100:53
1492 20      26108208        .       A       T       .       PASS    AA=T;DP=99      GT:GQ:DP        0/1:77:27       0/1:12:26       0/1:100:46
1493 12      107428301       rs11113961      C       T       .       PASS    AA=C;DP=94      GT:GQ:DP        0/1:77:33       0/1:40:14       0/1:100:50
1494 6       168355266       rs9455607       A       C       .       PASS    AA=A;DP=101     GT:GQ:DP        0/1:78:14       0/1:100:24      0/1:100:65
1495 3       180023739       rs6765556       A       G       .       PASS    AA=G;DP=84      GT:GQ:DP        0/1:78:21       0/1:100:18      0/1:100:43
1496 2       37250284        rs28494956      C       T       .       PASS    AA=c;DP=68      GT:GQ:DP        0/1:78:21       0/1:11:15       0/1:80:25
1497 2       1832858 rs28566053      G       T       .       PASS    AA=G;DP=105     GT:GQ:DP        0/1:78:21       0/1:54:13       0/1:100:69
1498 1       190993687       rs7525732       C       T       .       PASS    AA=C;DP=134;HM2 GT:GQ:DP        0/1:78:22       0/1:100:29      0/1:100:87
1499 1       224951150       rs3768398       A       G       .       PASS    AA=G;DP=98;HM2  GT:GQ:DP        0/1:78:25       0/1:45:18       0/1:100:56
1500 1       151719455       rs1555885       A       G       .       PASS    AA=a;DP=119;HM2;HM3     GT:GQ:DP        0/1:78:25       0/1:93:20       0/1:100:73
1501 17      62378747        rs1109086       A       G       .       PASS    AA=A;DP=167     GT:GQ:DP        0/1:78:34       0/1:90:33       0/1:100:58
1502 3       195675931       rs6768884       A       G       .       PASS    AA=A;DP=108     GT:GQ:DP        0/1:79:14       0/1:37:24       0/1:100:72
1503 4       21679398        rs7677506       A       T       .       PASS    AA=a;DP=57      GT:GQ:DP        0/1:79:14       0/1:67:14       0/1:56:23
1504 1       189243563       rs7534290       G       T       .       PASS    AA=T;DP=89;HM2  GT:GQ:DP        0/1:79:15       0/1:60:13       0/1:100:60
1505 18      38723389        .       A       G       .       PASS    AA=A;DP=87      GT:GQ:DP        0/1:79:17       0/1:100:20      0/1:100:32
1506 13      42506386        .       A       G       .       PASS    AA=-;DP=58      GT:GQ:DP        0/1:79:17       0/1:67:13       0/1:100:23
1507 14      70727277        rs11850267      A       G       .       PASS    AA=G;DP=100     GT:GQ:DP        0/1:79:19       0/1:90:24       0/1:100:53
1508 8       91858140        .       A       G       .       PASS    AA=A;DP=139     GT:GQ:DP        0/1:79:21       0/1:44:27       0/1:100:92
1509 18      14977478        .       C       T       .       PASS    AA=c;DP=108     GT:GQ:DP        0/1:79:22       0/1:86:21       0/1:100:52
1510 4       118472557       rs17861756      C       T       .       PASS    AA=T;DP=126     GT:GQ:DP        0/1:79:24       0/1:81:16       0/1:100:85
1511 1       245276599       rs4971315       A       T       .       PASS    AA=A;DP=118     GT:GQ:DP        0/1:79:34       0/1:85:19       0/1:100:63
1512 2       217094181       rs487276        A       G       .       PASS    AA=G;DP=165     GT:GQ:DP        0/1:79:36       0/1:80:26       0/1:100:102
1513 5       98953580        rs2682153       C       T       .       PASS    AA=C;DP=98      GT:GQ:DP        0/1:7:16        0/1:94:23       0/1:100:60
1514 8       79045288        rs4626583       C       T       .       PASS    AA=T;DP=83      GT:GQ:DP        0/1:80:14       0/1:100:17      0/1:100:55
1515 16      7495354 rs12598763      G       T       .       PASS    AA=G;DP=115     GT:GQ:DP        0/1:80:19       0/1:100:21      0/1:100:77
1516 1       189062704       rs1780664       A       G       .       PASS    AA=A;DP=78      GT:GQ:DP        0/1:80:19       0/1:100:23      0/1:85:35
1517 3       59753311        rs2629881       C       T       .       PASS    AA=T;DP=92      GT:GQ:DP        0/1:80:20       0/1:100:21      0/1:100:50
1518 14      25293638        rs1956770       C       T       .       PASS    AA=C;DP=118     GT:GQ:DP        0/1:80:20       0/1:100:22      0/1:100:79
1519 7       66221345        rs6460322       A       T       .       PASS    AA=A;DP=95      GT:GQ:DP        0/1:80:25       0/1:100:20      0/1:100:49
1520 7       148812025       rs10261861      C       T       .       PASS    AA=C;DP=85      GT:GQ:DP        0/1:80:26       0/1:53:10       0/1:100:50
1521 4       73689836        rs1518485       C       T       .       PASS    AA=C;DP=114     GT:GQ:DP        0/1:80:27       0/1:67:24       0/1:100:62
1522 8       25784622        rs57451558      C       T       .       PASS    AA=C;DP=121     GT:GQ:DP        0/1:80:29       0/1:47:20       0/1:100:74
1523 19      1485191 rs10775585      C       T       .       PASS    AA=C;DP=130     GT:GQ:DP        0/1:80:30       0/1:70:17       0/1:100:40
1524 20      219336  .       A       G       .       PASS    AA=a;DP=108     GT:GQ:DP        0/1:80:31       0/1:16:14       0/1:100:64
1525 10      125985935       .       A       G       .       PASS    AA=A;DP=143     GT:GQ:DP        0/1:80:35       0/1:81:21       0/1:100:84
1526 5       8690190 rs10040042      A       G       .       PASS    AA=A;DP=107     GT:GQ:DP        0/1:81:20       0/1:92:19       0/1:100:56
1527 6       162285891       rs1790022       C       T       .       PASS    AA=T;DP=100     GT:GQ:DP        0/1:81:21       0/1:100:20      0/1:100:58
1528 2       42815511        rs4953614       C       T       .       PASS    AA=C;DP=120     GT:GQ:DP        0/1:81:23       0/1:100:30      0/1:100:66
1529 7       15837882        rs17169090      A       G       .       PASS    AA=A;DP=118     GT:GQ:DP        0/1:81:23       0/1:100:33      0/1:100:64
1530 8       3693937 rs2954220       A       G       .       PASS    AA=G;DP=120     GT:GQ:DP        0/1:81:23       0/1:83:18       0/1:100:79
1531 8       5825382 rs2700768       C       G       .       PASS    AA=G;DP=132     GT:GQ:DP        0/1:81:24       0/1:100:25      0/1:100:84
1532 15      55690970        .       C       G       .       PASS    AA=C;DP=108     GT:GQ:DP        0/1:81:25       0/1:100:29      0/1:100:56
1533 8       142864177       rs10086775      A       T       .       PASS    AA=A;DP=100     GT:GQ:DP        0/1:81:26       0/1:59:21       0/1:100:53
1534 9       135391427       rs11507717      A       C       .       PASS    AA=C;DP=161     GT:GQ:DP        0/1:81:34       0/1:100:20      0/1:100:73
1535 22      41071737        rs2071773       A       C       .       PASS    AA=C;DP=109     GT:GQ:DP        0/1:81:34       0/1:35:20       0/1:100:55
1536 5       171924024       rs7734791       A       G       .       PASS    AA=G;DP=140     GT:GQ:DP        0/1:81:37       0/1:50:23       0/1:100:82
1537 6       102590597       rs2518146       A       C       .       PASS    AA=C;DP=78      GT:GQ:DP        0/1:82:10       0/1:55:21       0/1:100:46
1538 5       109590173       rs4129562       A       G       .       PASS    AA=A;DP=95      GT:GQ:DP        0/1:82:17       0/1:100:28      0/1:100:48
1539 19      33922831        rs7246445       G       T       .       PASS    AA=g;DP=67      GT:GQ:DP        0/1:82:17       0/1:81:17       0/1:100:26